Wall clock time and date at job start Tue Mar 31 2020 22:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39440 * 119.54066 * 2 1 4 4 C 1.35995 * 121.08713 * 180.02562 * 3 2 1 5 5 C 1.40825 * 119.73348 * 359.95777 * 4 3 2 6 6 N 1.33274 * 120.98940 * 180.29977 * 5 4 3 7 7 C 1.31883 * 121.29965 * 180.28182 * 6 5 4 8 8 C 1.48271 * 119.24098 * 179.75984 * 7 6 5 9 9 O 1.21500 * 120.00542 * 179.72772 * 8 7 6 10 10 N 1.34781 * 120.00144 * 359.72454 * 8 7 6 11 11 C 1.47425 * 125.64363 * 0.05369 * 10 8 7 12 12 C 1.54914 * 104.83075 * 204.08090 * 11 10 8 13 13 H 1.08993 * 111.03450 * 81.08248 * 12 11 10 14 14 N 1.46504 * 111.00258 * 204.92014 * 12 11 10 15 15 C 1.36943 * 119.99781 * 267.19686 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48504 * 109.47306 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47021 * 119.99661 * 19 17 15 22 22 H 1.48501 * 109.47039 * 240.00078 * 19 17 15 23 23 C 1.55149 * 101.58116 * 322.99151 * 12 11 10 24 24 C 1.47014 * 125.65005 * 180.02562 * 10 8 7 25 25 H 1.09000 * 109.88255 * 59.57088 * 24 10 8 26 26 C 1.52999 * 109.88369 * 298.40047 * 24 10 8 27 27 C 1.40278 * 121.51860 * 359.48218 * 7 6 5 28 28 C 1.36499 * 119.81749 * 0.25179 * 27 7 6 29 29 C 1.40759 * 118.24161 * 359.97438 * 28 27 7 30 30 C 1.36131 * 119.54922 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47163 * 269.97416 * 1 2 3 32 32 H 1.08993 * 109.47522 * 29.97870 * 1 2 3 33 33 H 1.09006 * 109.46992 * 149.97501 * 1 2 3 34 34 H 1.08002 * 119.45307 * 359.97438 * 3 2 1 35 35 H 1.08003 * 120.13266 * 179.97438 * 4 3 2 36 36 H 1.09004 * 110.36839 * 85.24810 * 11 10 8 37 37 H 1.08995 * 110.37517 * 322.92309 * 11 10 8 38 38 H 0.97000 * 120.00410 * 87.20011 * 14 12 11 39 39 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 40 40 H 1.09007 * 110.72112 * 153.86341 * 23 12 11 41 41 H 1.08999 * 110.72697 * 277.13701 * 23 12 11 42 42 H 1.08999 * 109.47575 * 302.19548 * 26 24 10 43 43 H 1.09008 * 109.46550 * 62.19505 * 26 24 10 44 44 H 1.09003 * 109.47111 * 182.18882 * 26 24 10 45 45 H 1.08000 * 120.08839 * 180.27984 * 27 7 6 46 46 H 1.08003 * 120.87923 * 179.97438 * 28 27 7 47 47 H 1.08003 * 120.16903 * 359.97024 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2498 -0.0005 5 6 4.2851 0.0463 -0.0002 6 7 5.6179 0.0530 0.0053 7 6 6.3087 -1.0703 0.0001 8 6 7.7902 -1.0095 0.0012 9 8 8.4404 -2.0359 0.0015 10 7 8.4157 0.1843 0.0018 11 6 7.7532 1.5013 0.0026 12 6 8.7963 2.4703 -0.6080 13 1 8.7947 2.4116 -1.6964 14 7 8.5622 3.8449 -0.1587 15 6 7.7854 4.6875 -0.9085 16 1 7.3458 4.3387 -1.8312 17 6 7.5684 5.9917 -0.4856 18 7 8.1046 6.4169 0.6386 19 14 6.5152 7.1433 -1.5123 20 1 6.0337 6.4281 -2.7214 21 1 5.3517 7.5979 -0.7094 22 1 7.3235 8.3195 -1.9227 23 6 10.1202 1.9118 -0.0229 24 6 9.8715 0.3889 0.0023 25 1 10.3111 -0.0733 -0.8816 26 6 10.4817 -0.2168 1.2679 27 6 5.6743 -2.3214 -0.0006 28 6 4.3111 -2.3912 -0.0010 29 6 3.5826 -1.1868 -0.0002 30 6 2.1784 -1.1842 -0.0005 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 1.6381 2.1388 -0.0004 35 1 4.0707 2.1982 -0.0009 36 1 7.5072 1.8017 1.0212 37 1 6.8543 1.4743 -0.6133 38 1 8.9574 4.1584 0.6699 39 1 7.9526 7.3281 0.9342 40 1 10.9615 2.1543 -0.6723 41 1 10.2874 2.2923 0.9848 42 1 10.0224 0.2373 2.1459 43 1 10.3022 -1.2919 1.2790 44 1 11.5551 -0.0274 1.2803 45 1 6.2629 -3.2270 -0.0003 46 1 3.8049 -3.3452 -0.0019 47 1 1.6338 -2.1169 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989162008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:59 Heat of formation + Delta-G solvation = 40.270180 kcal Electronic energy + Delta-G solvation = -29215.153134 eV Core-core repulsion = 25363.131609 eV Total energy + Delta-G solvation = -3852.021525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.13149 -39.73732 -37.75978 -37.02084 -34.19186 -33.73491 -32.51476 -31.38644 -31.12444 -30.36357 -28.38758 -27.53407 -25.36541 -24.49338 -23.93560 -23.40479 -22.23386 -21.55168 -20.20764 -19.25546 -18.05797 -17.39317 -17.12078 -16.85270 -16.07349 -15.54211 -15.18164 -14.82203 -14.45431 -14.41014 -14.19842 -13.96663 -13.74658 -13.48547 -13.41874 -13.30875 -13.16214 -13.00479 -12.57314 -12.46299 -12.21787 -12.10111 -11.68066 -11.67032 -11.54755 -11.35042 -11.10573 -10.99426 -10.78418 -10.70572 -10.60564 -10.22392 -9.98842 -9.96596 -9.74023 -9.35849 -8.88632 -8.83637 -8.33921 -8.23541 -7.02936 -5.81811 -3.11496 0.12323 0.57740 1.83777 2.38955 3.12142 3.26553 3.39917 3.46446 3.48218 4.02153 4.05537 4.38726 4.51867 4.57047 4.58100 4.69596 4.83984 4.94433 5.05987 5.13197 5.22524 5.27391 5.29966 5.30736 5.37413 5.53966 5.59464 5.65047 5.67532 5.79719 5.82256 5.82454 5.90365 5.92464 5.96544 6.16199 6.19571 6.23512 6.30811 6.36674 6.39923 6.43287 6.56630 6.65397 6.67941 6.90327 6.95651 7.65268 7.67496 7.82983 8.32753 8.36711 9.47856 10.02629 10.37939 11.40510 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007542 B = 0.004543 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.654216 B = 6162.406912 C = 9583.245572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.072 4.072 3 C -0.107 4.107 4 C -0.072 4.072 5 C 0.117 3.883 6 N -0.421 5.421 7 C 0.116 3.884 8 C 0.577 3.423 9 O -0.547 6.547 10 N -0.585 5.585 11 C 0.078 3.922 12 C 0.168 3.832 13 H 0.065 0.935 14 N -0.711 5.711 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.139 4.139 24 C 0.136 3.864 25 H 0.074 0.926 26 C -0.160 4.160 27 C -0.123 4.123 28 C -0.070 4.070 29 C -0.082 4.082 30 C -0.112 4.112 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.450 -16.769 -0.161 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.127 4.127 4 C -0.090 4.090 5 C -0.006 4.006 6 N -0.132 5.132 7 C -0.038 4.038 8 C 0.364 3.636 9 O -0.426 6.426 10 N -0.316 5.316 11 C -0.047 4.047 12 C 0.055 3.945 13 H 0.083 0.917 14 N -0.350 5.350 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.177 4.177 24 C 0.033 3.967 25 H 0.092 0.908 26 C -0.218 4.218 27 C -0.144 4.144 28 C -0.096 4.096 29 C -0.084 4.084 30 C -0.131 4.131 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.166 0.834 46 H 0.161 0.839 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.850 -16.374 -0.287 19.111 hybrid contribution -0.936 0.073 -0.140 0.950 sum -10.786 -16.301 -0.427 19.551 Atomic orbital electron populations 1.20861 0.90808 1.03080 1.02607 1.19772 0.96481 0.93038 0.97936 1.20863 0.94061 0.97873 0.99921 1.21076 0.93623 0.97486 0.96829 1.18989 0.89171 0.92924 0.99565 1.68319 1.06990 1.28983 1.08947 1.21336 0.94368 0.89505 0.98554 1.17560 0.85549 0.82791 0.77718 1.90724 1.65966 1.33526 1.52347 1.48503 1.07670 1.06466 1.68973 1.23797 0.98625 0.79777 1.02509 1.21397 0.90525 0.85573 0.96986 0.91677 1.42295 1.59635 1.06007 1.27088 1.19303 1.22788 0.92124 1.03073 0.90964 1.24731 1.00923 0.97357 0.97542 1.69665 1.48553 1.17181 1.22430 0.86153 0.79805 0.81084 0.79361 1.20485 1.21828 1.21857 1.23064 0.99935 0.92113 1.02638 1.21599 0.80099 0.96596 0.98417 0.90815 1.22129 1.00477 1.01925 0.97315 1.21694 0.95032 0.98712 0.98939 1.21388 0.93644 0.97676 0.96848 1.18947 0.94795 0.93992 1.00714 1.20779 0.92112 0.98177 1.02010 0.90829 0.91138 0.91404 0.84996 0.83549 0.91531 0.88347 0.77921 0.93481 0.90370 0.90407 0.92511 0.91609 0.91784 0.83422 0.83949 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.98 36.01 0.36 -0.41 16 2 C -0.07 -0.69 5.85 -104.93 -0.61 -1.31 16 3 C -0.11 -1.17 9.58 -39.94 -0.38 -1.56 16 4 C -0.07 -0.97 9.99 -39.41 -0.39 -1.37 16 5 C 0.12 1.72 6.61 -84.86 -0.56 1.16 16 6 N -0.42 -6.91 6.52 -7.54 -0.05 -6.96 16 7 C 0.12 1.84 6.73 -82.95 -0.56 1.29 16 8 C 0.58 10.02 7.63 -12.13 -0.09 9.92 16 9 O -0.55 -10.12 15.32 5.37 0.08 -10.04 16 10 N -0.58 -10.05 3.07 -163.96 -0.50 -10.55 16 11 C 0.08 1.45 5.62 -2.53 -0.01 1.44 16 12 C 0.17 3.27 3.71 -65.78 -0.24 3.03 16 13 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 14 N -0.71 -17.06 5.24 -51.35 -0.27 -17.33 16 15 C -0.24 -6.43 9.96 -15.06 -0.15 -6.58 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 19 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C -0.14 -2.26 6.12 -24.90 -0.15 -2.41 16 24 C 0.14 2.12 3.46 -66.95 -0.23 1.89 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 26 C -0.16 -2.28 9.09 37.16 0.34 -1.94 16 27 C -0.12 -1.59 9.54 -39.44 -0.38 -1.97 16 28 C -0.07 -0.75 9.88 -39.26 -0.39 -1.14 16 29 C -0.08 -1.01 5.75 -106.72 -0.61 -1.62 16 30 C -0.11 -1.10 9.37 -39.52 -0.37 -1.47 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 1.91 5.88 -51.93 -0.31 1.60 16 38 H 0.39 9.87 7.76 -40.82 -0.32 9.55 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 41 H 0.08 1.29 7.71 -51.93 -0.40 0.89 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.00 6.90 -51.92 -0.36 0.64 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.15 1.72 7.60 -52.49 -0.40 1.32 16 46 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -31.23 385.78 -10.58 -41.81 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.81 Total: 10.47 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -4.54 Total: -3.40 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.10 Total: -61.33 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.23 -10.58 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.077 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds