Wall clock time and date at job start Tue Mar 31 2020 22:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39440 * 119.54066 * 2 1 4 4 C 1.35995 * 121.08713 * 180.02562 * 3 2 1 5 5 C 1.40825 * 119.73348 * 359.95777 * 4 3 2 6 6 N 1.33274 * 120.98940 * 180.29977 * 5 4 3 7 7 C 1.31883 * 121.29965 * 180.28182 * 6 5 4 8 8 C 1.48271 * 119.24098 * 179.75984 * 7 6 5 9 9 O 1.21500 * 120.00542 * 179.72772 * 8 7 6 10 10 N 1.34781 * 120.00144 * 359.72454 * 8 7 6 11 11 C 1.47425 * 125.64363 * 0.05369 * 10 8 7 12 12 C 1.54914 * 104.83075 * 204.08090 * 11 10 8 13 13 H 1.08993 * 111.03450 * 81.08248 * 12 11 10 14 14 N 1.46504 * 111.00258 * 204.92014 * 12 11 10 15 15 C 1.36943 * 119.99781 * 267.19686 * 14 12 11 16 16 H 1.08002 * 119.99788 * 359.97438 * 15 14 12 17 17 C 1.38811 * 119.99622 * 180.27904 * 15 14 12 18 18 N 1.31614 * 120.00467 * 359.72375 * 17 15 14 19 19 Si 1.86801 * 119.99700 * 179.72266 * 17 15 14 20 20 H 1.48504 * 109.47306 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47021 * 119.99661 * 19 17 15 22 22 H 1.48501 * 109.47039 * 240.00078 * 19 17 15 23 23 C 1.55149 * 101.58116 * 322.99151 * 12 11 10 24 24 C 1.47014 * 125.65005 * 180.02562 * 10 8 7 25 25 H 1.09000 * 109.88255 * 59.57088 * 24 10 8 26 26 C 1.52999 * 109.88369 * 298.40047 * 24 10 8 27 27 C 1.40278 * 121.51860 * 359.48218 * 7 6 5 28 28 C 1.36499 * 119.81749 * 0.25179 * 27 7 6 29 29 C 1.40759 * 118.24161 * 359.97438 * 28 27 7 30 30 C 1.36131 * 119.54922 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47163 * 269.97416 * 1 2 3 32 32 H 1.08993 * 109.47522 * 29.97870 * 1 2 3 33 33 H 1.09006 * 109.46992 * 149.97501 * 1 2 3 34 34 H 1.08002 * 119.45307 * 359.97438 * 3 2 1 35 35 H 1.08003 * 120.13266 * 179.97438 * 4 3 2 36 36 H 1.09004 * 110.36839 * 85.24810 * 11 10 8 37 37 H 1.08995 * 110.37517 * 322.92309 * 11 10 8 38 38 H 0.97000 * 120.00410 * 87.20011 * 14 12 11 39 39 H 0.96995 * 120.00147 * 180.02562 * 18 17 15 40 40 H 1.09007 * 110.72112 * 153.86341 * 23 12 11 41 41 H 1.08999 * 110.72697 * 277.13701 * 23 12 11 42 42 H 1.08999 * 109.47575 * 302.19548 * 26 24 10 43 43 H 1.09008 * 109.46550 * 62.19505 * 26 24 10 44 44 H 1.09003 * 109.47111 * 182.18882 * 26 24 10 45 45 H 1.08000 * 120.08839 * 180.27984 * 27 7 6 46 46 H 1.08003 * 120.87923 * 179.97438 * 28 27 7 47 47 H 1.08003 * 120.16903 * 359.97024 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2498 -0.0005 5 6 4.2851 0.0463 -0.0002 6 7 5.6179 0.0530 0.0053 7 6 6.3087 -1.0703 0.0001 8 6 7.7902 -1.0095 0.0012 9 8 8.4404 -2.0359 0.0015 10 7 8.4157 0.1843 0.0018 11 6 7.7532 1.5013 0.0026 12 6 8.7963 2.4703 -0.6080 13 1 8.7947 2.4116 -1.6964 14 7 8.5622 3.8449 -0.1587 15 6 7.7854 4.6875 -0.9085 16 1 7.3458 4.3387 -1.8312 17 6 7.5684 5.9917 -0.4856 18 7 8.1046 6.4169 0.6386 19 14 6.5152 7.1433 -1.5123 20 1 6.0337 6.4281 -2.7214 21 1 5.3517 7.5979 -0.7094 22 1 7.3235 8.3195 -1.9227 23 6 10.1202 1.9118 -0.0229 24 6 9.8715 0.3889 0.0023 25 1 10.3111 -0.0733 -0.8816 26 6 10.4817 -0.2168 1.2679 27 6 5.6743 -2.3214 -0.0006 28 6 4.3111 -2.3912 -0.0010 29 6 3.5826 -1.1868 -0.0002 30 6 2.1784 -1.1842 -0.0005 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 1.6381 2.1388 -0.0004 35 1 4.0707 2.1982 -0.0009 36 1 7.5072 1.8017 1.0212 37 1 6.8543 1.4743 -0.6133 38 1 8.9574 4.1584 0.6699 39 1 7.9526 7.3281 0.9342 40 1 10.9615 2.1543 -0.6723 41 1 10.2874 2.2923 0.9848 42 1 10.0224 0.2373 2.1459 43 1 10.3022 -1.2919 1.2790 44 1 11.5551 -0.0274 1.2803 45 1 6.2629 -3.2270 -0.0003 46 1 3.8049 -3.3452 -0.0019 47 1 1.6338 -2.1169 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989162008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:58 Heat of formation + Delta-G solvation = 22.974638 kcal Electronic energy + Delta-G solvation = -29215.903125 eV Core-core repulsion = 25363.131609 eV Total energy + Delta-G solvation = -3852.771516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17551 -41.00862 -39.00128 -38.17499 -36.01975 -34.71895 -33.53440 -33.20519 -32.30659 -31.29719 -30.09915 -28.39229 -26.73679 -25.91041 -25.32002 -24.57035 -23.17531 -22.75389 -21.79285 -20.51310 -19.30916 -18.99315 -18.44816 -17.84597 -17.43894 -16.91266 -16.37995 -16.29944 -15.73135 -15.45193 -15.36743 -15.15384 -15.11578 -14.79754 -14.64815 -14.36521 -14.17011 -14.10911 -13.95393 -13.70065 -13.46385 -13.16659 -13.06735 -12.89908 -12.81916 -12.50999 -12.45701 -12.26429 -12.22282 -12.07231 -12.04455 -11.76334 -11.63921 -11.50128 -11.30538 -11.04117 -10.35712 -9.85435 -9.61754 -9.20993 -9.02951 -7.94201 -5.23750 -0.85710 -0.36952 0.89104 1.33705 1.48274 1.48872 1.58754 1.83149 2.14783 2.56099 2.89205 3.04125 3.36867 3.42843 3.56351 3.71077 3.77083 3.83646 3.87813 3.97791 3.99751 4.14491 4.16256 4.30874 4.33031 4.39421 4.46606 4.50499 4.65815 4.72315 4.75821 4.81546 4.88267 4.88947 4.98271 5.01774 5.04974 5.07890 5.18037 5.22195 5.24305 5.30651 5.36291 5.40001 5.50981 5.53910 5.54899 5.85495 6.26535 6.39758 6.59825 7.01489 7.34237 8.04738 8.30709 9.29041 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007542 B = 0.004543 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3711.654216 B = 6162.406912 C = 9583.245572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.096 4.096 4 C -0.107 4.107 5 C 0.091 3.909 6 N -0.455 5.455 7 C 0.090 3.910 8 C 0.574 3.426 9 O -0.561 6.561 10 N -0.589 5.589 11 C 0.101 3.899 12 C 0.161 3.839 13 H 0.062 0.938 14 N -0.720 5.720 15 C -0.240 4.240 16 H 0.074 0.926 17 C -0.067 4.067 18 N -0.966 5.966 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.294 1.294 23 C -0.125 4.125 24 C 0.134 3.866 25 H 0.084 0.916 26 C -0.151 4.151 27 C -0.135 4.135 28 C -0.047 4.047 29 C -0.092 4.092 30 C -0.103 4.103 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.158 0.842 46 H 0.190 0.810 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.812 -18.957 -0.872 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.115 4.115 4 C -0.126 4.126 5 C -0.033 4.033 6 N -0.166 5.166 7 C -0.063 4.063 8 C 0.362 3.638 9 O -0.441 6.441 10 N -0.320 5.320 11 C -0.025 4.025 12 C 0.051 3.949 13 H 0.080 0.920 14 N -0.359 5.359 15 C -0.372 4.372 16 H 0.092 0.908 17 C -0.259 4.259 18 N -0.617 5.617 19 Si 0.797 3.203 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.164 4.164 24 C 0.031 3.969 25 H 0.102 0.898 26 C -0.209 4.209 27 C -0.156 4.156 28 C -0.073 4.073 29 C -0.094 4.094 30 C -0.121 4.121 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.139 0.861 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.209 0.791 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.176 0.824 46 H 0.207 0.793 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.205 -18.610 -1.021 22.278 hybrid contribution -0.332 0.680 0.078 0.761 sum -12.537 -17.930 -0.943 21.898 Atomic orbital electron populations 1.20930 0.88025 1.04409 1.03697 1.20171 0.98379 0.92214 0.96536 1.21170 0.92994 0.99709 0.97673 1.21013 0.94937 0.96512 1.00157 1.19265 0.88823 0.94500 1.00691 1.68151 1.08370 1.29822 1.10300 1.21316 0.93524 0.90829 1.00587 1.17905 0.86509 0.82379 0.76991 1.90693 1.66630 1.33671 1.53078 1.48526 1.08246 1.05934 1.69325 1.23290 0.97954 0.80496 1.00725 1.21526 0.92728 0.83815 0.96869 0.92026 1.42383 1.59424 1.07500 1.26578 1.19614 1.22080 0.92515 1.02959 0.90777 1.25468 1.02722 0.98948 0.98810 1.69809 1.50438 1.17243 1.24171 0.85162 0.78007 0.78908 0.78229 1.19201 1.21972 1.22085 1.22962 0.98525 0.92317 1.02563 1.21730 0.79442 0.96047 0.99669 0.89849 1.22054 1.01918 1.00935 0.96018 1.21821 0.96229 0.97686 0.99848 1.21869 0.92670 0.98973 0.93774 1.19245 0.96186 0.93422 1.00535 1.21216 0.90933 0.99940 1.00031 0.89669 0.90512 0.89494 0.83274 0.86079 0.93786 0.89391 0.79054 0.93982 0.88567 0.90639 0.93365 0.92523 0.89178 0.82392 0.79282 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.98 71.24 0.71 -0.31 16 2 C -0.07 -1.18 5.85 -20.07 -0.12 -1.30 16 3 C -0.10 -2.01 9.58 22.04 0.21 -1.80 16 4 C -0.11 -3.08 9.99 22.38 0.22 -2.86 16 5 C 0.09 2.75 6.61 40.47 0.27 3.01 16 6 N -0.45 -15.80 6.52 -177.77 -1.16 -16.96 16 7 C 0.09 2.95 6.73 42.30 0.28 3.23 16 8 C 0.57 20.53 7.63 86.91 0.66 21.19 16 9 O -0.56 -20.96 15.32 -3.72 -0.06 -21.01 16 10 N -0.59 -20.94 3.07 -790.95 -2.42 -23.36 16 11 C 0.10 3.98 5.62 86.86 0.49 4.47 16 12 C 0.16 6.51 3.71 46.38 0.17 6.68 16 13 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16 14 N -0.72 -35.81 5.24 -316.38 -1.66 -37.47 16 15 C -0.24 -13.10 9.96 84.03 0.84 -12.27 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 18 N -0.97 -58.11 13.06 21.65 0.28 -57.83 16 19 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 C -0.12 -4.08 6.12 31.78 0.19 -3.89 16 24 C 0.13 4.16 3.46 45.34 0.16 4.32 16 25 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 26 C -0.15 -4.23 9.09 71.98 0.65 -3.57 16 27 C -0.14 -3.38 9.54 22.36 0.21 -3.17 16 28 C -0.05 -0.90 9.88 22.48 0.22 -0.68 16 29 C -0.09 -2.09 5.75 -21.22 -0.12 -2.21 16 30 C -0.10 -1.65 9.37 22.31 0.21 -1.44 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.62 8.08 -2.39 -0.02 0.61 16 33 H 0.09 0.50 8.07 -2.38 -0.02 0.48 16 34 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 36 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.09 3.67 5.88 -2.39 -0.01 3.66 16 38 H 0.38 20.03 7.76 -92.71 -0.72 19.31 16 39 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 41 H 0.07 2.52 7.71 -2.39 -0.02 2.50 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.70 6.90 -2.38 -0.02 1.68 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.16 3.51 7.60 -2.91 -0.02 3.49 16 46 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -70.73 385.78 3.02 -67.71 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: 0.27 Total: 35.32 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.74 Total: 6.12 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -4.96 Total: -135.62 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.01 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.73 3.02 -67.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.688 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds