Wall clock time and date at job start Tue Mar 31 2020 22:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39436 * 119.54245 * 2 1 4 4 C 1.35997 * 121.08339 * 180.02562 * 3 2 1 5 5 C 1.40821 * 119.73933 * 359.97438 * 4 3 2 6 6 N 1.33270 * 120.99302 * 180.02562 * 5 4 3 7 7 C 1.31878 * 121.29685 * 180.02562 * 6 5 4 8 8 C 1.48281 * 119.23533 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99608 * 179.97438 * 8 7 6 10 10 N 1.34772 * 120.00256 * 359.96254 * 8 7 6 11 11 C 1.47428 * 125.64542 * 0.02562 * 10 8 7 12 12 C 1.54907 * 104.83438 * 204.09023 * 11 10 8 13 13 H 1.08992 * 111.01177 * 204.91847 * 12 11 10 14 14 N 1.46502 * 111.00262 * 81.06617 * 12 11 10 15 15 C 1.36936 * 119.99934 * 86.45163 * 14 12 11 16 16 H 1.08002 * 119.99843 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00274 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00053 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99628 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46935 * 90.00048 * 19 17 15 21 21 H 1.48502 * 109.46978 * 209.99396 * 19 17 15 22 22 H 1.48492 * 109.47288 * 329.99507 * 19 17 15 23 23 C 1.55153 * 101.58210 * 322.99802 * 12 11 10 24 24 C 1.47020 * 125.65114 * 179.71605 * 10 8 7 25 25 H 1.09000 * 109.88470 * 59.55933 * 24 10 8 26 26 C 1.53004 * 109.87987 * 298.38945 * 24 10 8 27 27 C 1.40278 * 121.52884 * 359.95886 * 7 6 5 28 28 C 1.36512 * 119.81099 * 0.02562 * 27 7 6 29 29 C 1.40756 * 118.24177 * 359.97438 * 28 27 7 30 30 C 1.36133 * 119.54143 * 179.72581 * 2 1 3 31 31 H 1.09002 * 109.47152 * 90.00127 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00227 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00208 * 1 2 3 34 34 H 1.07997 * 119.45673 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.12563 * 179.97438 * 4 3 2 36 36 H 1.09000 * 110.37061 * 322.93737 * 11 10 8 37 37 H 1.09004 * 110.36692 * 85.14679 * 11 10 8 38 38 H 0.96998 * 120.00120 * 266.46276 * 14 12 11 39 39 H 0.97003 * 119.99808 * 180.02562 * 18 17 15 40 40 H 1.09003 * 110.72371 * 153.86177 * 23 12 11 41 41 H 1.09000 * 110.71795 * 276.95271 * 23 12 11 42 42 H 1.08997 * 109.46548 * 61.45703 * 26 24 10 43 43 H 1.09001 * 109.46985 * 181.45011 * 26 24 10 44 44 H 1.08998 * 109.47387 * 301.45463 * 26 24 10 45 45 H 1.07992 * 120.09678 * 179.97438 * 27 7 6 46 46 H 1.07993 * 120.87484 * 179.97438 * 28 27 7 47 47 H 1.07995 * 120.17895 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 -0.0005 5 6 4.2852 0.0461 -0.0005 6 7 5.6179 0.0528 -0.0005 7 6 6.3086 -1.0706 -0.0010 8 6 7.7902 -1.0098 -0.0016 9 8 8.4402 -2.0364 -0.0016 10 7 8.4157 0.1839 -0.0023 11 6 7.7532 1.5010 -0.0021 12 6 8.7958 2.4694 -0.6143 13 1 8.6221 3.4924 -0.2809 14 7 8.7922 2.3885 -2.0771 15 6 7.9184 3.1532 -2.8030 16 1 7.2323 3.8163 -2.2971 17 6 7.9153 3.0769 -4.1890 18 7 7.0758 3.8124 -4.8867 19 14 9.1026 1.9306 -5.0640 20 1 8.4682 0.5991 -5.2371 21 1 9.4436 2.4932 -6.3953 22 1 10.3398 1.7881 -4.2552 23 6 10.1203 1.9113 -0.0299 24 6 9.8716 0.3885 0.0030 25 1 10.3145 -0.0766 -0.8777 26 6 10.4769 -0.2131 1.2729 27 6 5.6742 -2.3217 -0.0007 28 6 4.3109 -2.3914 -0.0004 29 6 3.5824 -1.1870 0.0001 30 6 2.1782 -1.1843 0.0057 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1980 -0.0009 36 1 6.8538 1.4734 -0.6173 37 1 7.5063 1.8013 1.0162 38 1 9.4086 1.7931 -2.5314 39 1 7.0734 3.7588 -5.8553 40 1 10.9610 2.1532 -0.6801 41 1 10.2898 2.2952 0.9761 42 1 10.2859 -1.2861 1.2933 43 1 11.5522 -0.0352 1.2824 44 1 10.0237 0.2532 2.1477 45 1 6.2626 -3.2273 -0.0016 46 1 3.8047 -3.3453 -0.0006 47 1 1.6337 -2.1169 0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989162011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:03 Heat of formation + Delta-G solvation = 45.146648 kcal Electronic energy + Delta-G solvation = -29655.306203 eV Core-core repulsion = 25803.496137 eV Total energy + Delta-G solvation = -3851.810066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06139 -39.73929 -37.79032 -37.00022 -34.10230 -33.66555 -32.46565 -31.46474 -31.13519 -30.30178 -28.91719 -27.50000 -25.50268 -24.43316 -23.74738 -23.26070 -22.18491 -21.72498 -20.07999 -19.23064 -17.98498 -17.67506 -17.17867 -16.80213 -16.11547 -15.50890 -15.12158 -14.73353 -14.42780 -14.29322 -14.22901 -14.03935 -13.82607 -13.54733 -13.41041 -13.25161 -13.08832 -12.92940 -12.65889 -12.49169 -12.24277 -12.00438 -11.85957 -11.61577 -11.54538 -11.38063 -11.26588 -11.00667 -10.81165 -10.67710 -10.57897 -10.33193 -10.04791 -9.93335 -9.59901 -9.31106 -8.90151 -8.76213 -8.27727 -8.20285 -7.26892 -5.78585 -3.13857 0.19723 0.65297 1.91140 2.46111 3.17547 3.34320 3.37524 3.41874 3.46263 4.06849 4.15103 4.45290 4.58847 4.61072 4.63477 4.74333 4.89579 4.97289 5.04014 5.12722 5.18722 5.19999 5.33726 5.36450 5.38238 5.41486 5.53953 5.61147 5.64689 5.71751 5.78627 5.83887 5.86531 5.94737 5.98353 6.02123 6.20176 6.22928 6.24986 6.32833 6.38201 6.44023 6.45957 6.61951 6.65824 6.73735 7.03551 7.71827 7.86698 7.96972 8.39252 8.41325 9.18344 9.91390 10.10424 11.39421 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.004429 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.342279 B = 6319.747944 C = 8082.609488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.107 4.107 4 C -0.070 4.070 5 C 0.118 3.882 6 N -0.420 5.420 7 C 0.119 3.881 8 C 0.580 3.420 9 O -0.548 6.548 10 N -0.577 5.577 11 C 0.073 3.927 12 C 0.169 3.831 13 H 0.078 0.922 14 N -0.737 5.737 15 C -0.242 4.242 16 H 0.093 0.907 17 C 0.009 3.991 18 N -0.931 5.931 19 Si 0.879 3.121 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.140 4.140 24 C 0.134 3.866 25 H 0.072 0.928 26 C -0.159 4.159 27 C -0.123 4.123 28 C -0.070 4.070 29 C -0.083 4.083 30 C -0.111 4.111 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.143 0.857 36 H 0.115 0.885 37 H 0.056 0.944 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.055 0.945 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 -9.105 14.702 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.089 4.089 5 C -0.005 4.005 6 N -0.131 5.131 7 C -0.035 4.035 8 C 0.367 3.633 9 O -0.426 6.426 10 N -0.307 5.307 11 C -0.052 4.052 12 C 0.058 3.942 13 H 0.096 0.904 14 N -0.379 5.379 15 C -0.372 4.372 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.579 5.579 19 Si 0.710 3.290 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.179 4.179 24 C 0.031 3.969 25 H 0.091 0.909 26 C -0.217 4.217 27 C -0.144 4.144 28 C -0.095 4.095 29 C -0.085 4.085 30 C -0.129 4.129 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.133 0.867 37 H 0.074 0.926 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.165 0.835 46 H 0.160 0.840 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.813 -8.659 14.603 18.688 hybrid contribution 0.342 -1.626 -0.926 1.903 sum -7.471 -10.285 13.676 18.672 Atomic orbital electron populations 1.20857 0.90833 1.02929 1.02681 1.19752 0.96455 0.93046 0.98118 1.20828 0.94023 0.97830 1.00001 1.20971 0.93565 0.97234 0.97092 1.18974 0.89190 0.92942 0.99401 1.68245 1.06942 1.29008 1.08945 1.21289 0.94301 0.89526 0.98363 1.17518 0.85586 0.82715 0.77527 1.90723 1.66015 1.33494 1.52366 1.48302 1.07168 1.06296 1.68981 1.23692 0.99663 0.81267 1.00557 1.21393 0.91130 0.96809 0.84867 0.90411 1.42681 1.44164 1.50776 1.00292 1.19034 1.12061 1.17120 0.88994 0.88958 1.24618 0.98735 0.99234 0.96098 1.69692 1.39158 1.43128 1.05918 0.86632 0.81596 0.81296 0.79510 1.21237 1.21689 1.20309 1.23078 0.99907 0.93101 1.01834 1.21573 0.80520 0.96494 0.98335 0.90949 1.22124 1.00343 1.02204 0.97041 1.21689 0.95057 0.98711 0.98914 1.21379 0.93628 0.97683 0.96857 1.18942 0.94793 0.94015 1.00721 1.20777 0.92113 0.98178 1.01859 0.90773 0.91219 0.91466 0.85057 0.83916 0.86740 0.92577 0.80567 0.93095 0.89926 0.90277 0.91501 0.91882 0.92640 0.83478 0.83972 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.98 36.01 0.36 -0.45 16 2 C -0.07 -0.75 5.85 -104.93 -0.61 -1.36 16 3 C -0.11 -1.19 9.58 -39.94 -0.38 -1.58 16 4 C -0.07 -0.96 9.99 -39.41 -0.39 -1.36 16 5 C 0.12 1.83 6.61 -84.85 -0.56 1.27 16 6 N -0.42 -7.25 6.51 -7.54 -0.05 -7.30 16 7 C 0.12 2.04 6.73 -82.95 -0.56 1.48 16 8 C 0.58 10.81 7.63 -12.13 -0.09 10.71 16 9 O -0.55 -10.88 15.33 5.36 0.08 -10.79 16 10 N -0.58 -10.30 3.06 -163.95 -0.50 -10.80 16 11 C 0.07 1.30 5.62 -2.53 -0.01 1.29 16 12 C 0.17 3.11 3.69 -65.78 -0.24 2.87 16 13 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 14 N -0.74 -17.06 5.07 -51.35 -0.26 -17.32 16 15 C -0.24 -6.64 10.47 -15.06 -0.16 -6.80 16 16 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 17 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.96 13.97 55.49 0.78 -28.19 16 19 Si 0.88 22.54 27.74 -169.99 -4.71 17.83 16 20 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 23 C -0.14 -2.09 6.05 -24.89 -0.15 -2.24 16 24 C 0.13 2.14 3.45 -66.95 -0.23 1.91 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 C -0.16 -2.16 9.11 37.16 0.34 -1.82 16 27 C -0.12 -1.76 9.54 -39.44 -0.38 -2.13 16 28 C -0.07 -0.84 9.88 -39.25 -0.39 -1.22 16 29 C -0.08 -1.09 5.75 -106.71 -0.61 -1.71 16 30 C -0.11 -1.18 9.37 -39.52 -0.37 -1.55 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.11 2.34 5.88 -51.93 -0.31 2.04 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.36 8.52 5.68 -40.82 -0.23 8.29 16 39 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.08 0.98 7.85 -51.93 -0.41 0.57 16 42 H 0.07 1.01 6.89 -51.93 -0.36 0.66 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.15 1.92 7.60 -52.49 -0.40 1.52 16 46 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -33.61 382.83 -10.22 -43.83 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.78 Total: 9.49 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -4.54 Total: -2.52 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.04 Total: -63.60 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.61 -10.22 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.980 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds