Wall clock time and date at job start Tue Mar 31 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39436 * 119.54245 * 2 1 4 4 C 1.35997 * 121.08339 * 180.02562 * 3 2 1 5 5 C 1.40821 * 119.73933 * 359.97438 * 4 3 2 6 6 N 1.33270 * 120.99302 * 180.02562 * 5 4 3 7 7 C 1.31878 * 121.29685 * 180.02562 * 6 5 4 8 8 C 1.48281 * 119.23533 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99608 * 179.97438 * 8 7 6 10 10 N 1.34772 * 120.00256 * 359.96254 * 8 7 6 11 11 C 1.47428 * 125.64542 * 0.02562 * 10 8 7 12 12 C 1.54907 * 104.83438 * 204.09023 * 11 10 8 13 13 H 1.08992 * 111.01177 * 204.91847 * 12 11 10 14 14 N 1.46502 * 111.00262 * 81.06617 * 12 11 10 15 15 C 1.36936 * 119.99934 * 86.45163 * 14 12 11 16 16 H 1.08002 * 119.99843 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00274 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00053 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99628 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46935 * 90.00048 * 19 17 15 21 21 H 1.48502 * 109.46978 * 209.99396 * 19 17 15 22 22 H 1.48492 * 109.47288 * 329.99507 * 19 17 15 23 23 C 1.55153 * 101.58210 * 322.99802 * 12 11 10 24 24 C 1.47020 * 125.65114 * 179.71605 * 10 8 7 25 25 H 1.09000 * 109.88470 * 59.55933 * 24 10 8 26 26 C 1.53004 * 109.87987 * 298.38945 * 24 10 8 27 27 C 1.40278 * 121.52884 * 359.95886 * 7 6 5 28 28 C 1.36512 * 119.81099 * 0.02562 * 27 7 6 29 29 C 1.40756 * 118.24177 * 359.97438 * 28 27 7 30 30 C 1.36133 * 119.54143 * 179.72581 * 2 1 3 31 31 H 1.09002 * 109.47152 * 90.00127 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00227 * 1 2 3 33 33 H 1.09004 * 109.47113 * 210.00208 * 1 2 3 34 34 H 1.07997 * 119.45673 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.12563 * 179.97438 * 4 3 2 36 36 H 1.09000 * 110.37061 * 322.93737 * 11 10 8 37 37 H 1.09004 * 110.36692 * 85.14679 * 11 10 8 38 38 H 0.96998 * 120.00120 * 266.46276 * 14 12 11 39 39 H 0.97003 * 119.99808 * 180.02562 * 18 17 15 40 40 H 1.09003 * 110.72371 * 153.86177 * 23 12 11 41 41 H 1.09000 * 110.71795 * 276.95271 * 23 12 11 42 42 H 1.08997 * 109.46548 * 61.45703 * 26 24 10 43 43 H 1.09001 * 109.46985 * 181.45011 * 26 24 10 44 44 H 1.08998 * 109.47387 * 301.45463 * 26 24 10 45 45 H 1.07992 * 120.09678 * 179.97438 * 27 7 6 46 46 H 1.07993 * 120.87484 * 179.97438 * 28 27 7 47 47 H 1.07995 * 120.17895 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 -0.0005 5 6 4.2852 0.0461 -0.0005 6 7 5.6179 0.0528 -0.0005 7 6 6.3086 -1.0706 -0.0010 8 6 7.7902 -1.0098 -0.0016 9 8 8.4402 -2.0364 -0.0016 10 7 8.4157 0.1839 -0.0023 11 6 7.7532 1.5010 -0.0021 12 6 8.7958 2.4694 -0.6143 13 1 8.6221 3.4924 -0.2809 14 7 8.7922 2.3885 -2.0771 15 6 7.9184 3.1532 -2.8030 16 1 7.2323 3.8163 -2.2971 17 6 7.9153 3.0769 -4.1890 18 7 7.0758 3.8124 -4.8867 19 14 9.1026 1.9306 -5.0640 20 1 8.4682 0.5991 -5.2371 21 1 9.4436 2.4932 -6.3953 22 1 10.3398 1.7881 -4.2552 23 6 10.1203 1.9113 -0.0299 24 6 9.8716 0.3885 0.0030 25 1 10.3145 -0.0766 -0.8777 26 6 10.4769 -0.2131 1.2729 27 6 5.6742 -2.3217 -0.0007 28 6 4.3109 -2.3914 -0.0004 29 6 3.5824 -1.1870 0.0001 30 6 2.1782 -1.1843 0.0057 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1980 -0.0009 36 1 6.8538 1.4734 -0.6173 37 1 7.5063 1.8013 1.0162 38 1 9.4086 1.7931 -2.5314 39 1 7.0734 3.7588 -5.8553 40 1 10.9610 2.1532 -0.6801 41 1 10.2898 2.2952 0.9761 42 1 10.2859 -1.2861 1.2933 43 1 11.5522 -0.0352 1.2824 44 1 10.0237 0.2532 2.1477 45 1 6.2626 -3.2273 -0.0016 46 1 3.8047 -3.3453 -0.0006 47 1 1.6337 -2.1169 0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989162011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:02 Heat of formation + Delta-G solvation = 24.971220 kcal Electronic energy + Delta-G solvation = -29656.181075 eV Core-core repulsion = 25803.496137 eV Total energy + Delta-G solvation = -3852.684938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15975 -41.01892 -39.06365 -38.16754 -35.94322 -34.71417 -33.56170 -33.34923 -32.28327 -31.28825 -30.60031 -28.39168 -26.78092 -25.61334 -25.27696 -24.63460 -23.19078 -22.92141 -21.59201 -20.49467 -19.74042 -19.00648 -18.45394 -17.87128 -17.49015 -16.74460 -16.47962 -16.27206 -15.80973 -15.59426 -15.36372 -15.15131 -15.05629 -14.76874 -14.68700 -14.44195 -14.27107 -14.12980 -13.99746 -13.68203 -13.48125 -13.25757 -13.14582 -13.03303 -12.77953 -12.49814 -12.44158 -12.29681 -12.21577 -12.08317 -11.97816 -11.80003 -11.63266 -11.55409 -11.29724 -11.12140 -10.36740 -9.84964 -9.63322 -9.25156 -9.18322 -8.03454 -5.34726 -0.84388 -0.36394 0.90672 1.30701 1.34159 1.34924 1.39472 1.88383 2.17116 2.44334 2.91269 3.06140 3.27358 3.45883 3.55557 3.59377 3.73416 3.77890 3.84576 3.86698 3.99785 4.06268 4.15988 4.32272 4.32947 4.38581 4.48304 4.66296 4.68200 4.71436 4.75645 4.81566 4.88638 4.89393 5.00008 5.02104 5.05081 5.09998 5.15027 5.21854 5.26379 5.30505 5.31299 5.43758 5.55289 5.59521 5.78840 5.87019 6.20928 6.42904 6.60815 7.03698 7.06421 7.82955 8.00087 9.17837 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009114 B = 0.004429 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3071.342279 B = 6319.747944 C = 8082.609488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.096 4.096 4 C -0.103 4.103 5 C 0.089 3.911 6 N -0.446 5.446 7 C 0.088 3.912 8 C 0.571 3.429 9 O -0.569 6.569 10 N -0.582 5.582 11 C 0.087 3.913 12 C 0.157 3.843 13 H 0.085 0.915 14 N -0.741 5.741 15 C -0.216 4.216 16 H 0.067 0.933 17 C -0.056 4.056 18 N -0.979 5.979 19 Si 0.938 3.062 20 H -0.297 1.297 21 H -0.292 1.292 22 H -0.252 1.252 23 C -0.123 4.123 24 C 0.125 3.875 25 H 0.055 0.945 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.051 4.051 29 C -0.095 4.095 30 C -0.106 4.106 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.360 0.640 39 H 0.255 0.745 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.154 0.846 46 H 0.187 0.813 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.262 -10.543 16.294 21.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.122 4.122 5 C -0.035 4.035 6 N -0.158 5.158 7 C -0.065 4.065 8 C 0.359 3.641 9 O -0.449 6.449 10 N -0.312 5.312 11 C -0.039 4.039 12 C 0.048 3.952 13 H 0.103 0.897 14 N -0.383 5.383 15 C -0.347 4.347 16 H 0.085 0.915 17 C -0.248 4.248 18 N -0.630 5.630 19 Si 0.767 3.233 20 H -0.224 1.224 21 H -0.219 1.219 22 H -0.176 1.176 23 C -0.161 4.161 24 C 0.022 3.978 25 H 0.073 0.927 26 C -0.205 4.205 27 C -0.160 4.160 28 C -0.076 4.076 29 C -0.097 4.097 30 C -0.125 4.125 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.172 0.828 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.193 0.807 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.133 0.867 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.172 0.828 46 H 0.204 0.796 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.695 -10.098 16.258 21.021 hybrid contribution 0.419 -1.127 -1.312 1.780 sum -8.276 -11.225 14.946 20.442 Atomic orbital electron populations 1.20931 0.87988 1.04538 1.03567 1.20193 0.98430 0.92296 0.96416 1.21196 0.93061 0.99682 0.97639 1.21024 0.94855 0.96476 0.99823 1.19343 0.88929 0.94637 1.00569 1.68121 1.08201 1.29492 1.09955 1.21315 0.93672 0.90863 1.00613 1.17900 0.86498 0.82622 0.77102 1.90682 1.66727 1.33990 1.53526 1.48426 1.08008 1.06017 1.68757 1.23423 0.98216 0.81298 1.00917 1.21673 0.93743 0.97524 0.82277 0.89738 1.42710 1.43250 1.50088 1.02260 1.19026 1.11029 1.15598 0.89094 0.91458 1.25274 1.00965 1.01446 0.97085 1.69843 1.41625 1.45674 1.05866 0.85665 0.80579 0.78544 0.78531 1.22410 1.21897 1.17636 1.23031 0.97694 0.91780 1.03582 1.21770 0.79605 0.97371 0.99005 0.92720 1.22024 1.01883 1.00697 0.95895 1.21805 0.96284 0.97779 1.00137 1.21843 0.92658 0.99065 0.94065 1.19264 0.96262 0.93520 1.00617 1.21196 0.90900 1.00010 1.00366 0.90024 0.90079 0.89542 0.82798 0.85315 0.89672 0.90713 0.80692 0.93565 0.89243 0.86715 0.93470 0.89199 0.91627 0.82835 0.79557 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.98 71.24 0.71 -0.43 16 2 C -0.07 -1.29 5.85 -20.06 -0.12 -1.40 16 3 C -0.10 -2.05 9.58 22.04 0.21 -1.84 16 4 C -0.10 -2.95 9.99 22.38 0.22 -2.73 16 5 C 0.09 2.83 6.61 40.47 0.27 3.10 16 6 N -0.45 -16.20 6.51 -177.76 -1.16 -17.36 16 7 C 0.09 3.14 6.73 42.31 0.28 3.43 16 8 C 0.57 22.01 7.63 86.92 0.66 22.67 16 9 O -0.57 -23.27 15.33 -3.74 -0.06 -23.32 16 10 N -0.58 -21.03 3.06 -790.91 -2.42 -23.46 16 11 C 0.09 3.13 5.62 86.85 0.49 3.62 16 12 C 0.16 5.70 3.69 46.38 0.17 5.87 16 13 H 0.08 2.97 8.13 -2.39 -0.02 2.95 16 14 N -0.74 -34.41 5.07 -316.39 -1.60 -36.02 16 15 C -0.22 -12.17 10.47 84.03 0.88 -11.29 16 16 H 0.07 4.07 8.06 -2.91 -0.02 4.04 16 17 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 18 N -0.98 -62.97 13.97 21.65 0.30 -62.67 16 19 Si 0.94 47.41 27.74 68.60 1.90 49.31 16 20 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 21 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 22 H -0.25 -11.52 6.52 99.48 0.65 -10.87 16 23 C -0.12 -3.39 6.05 31.79 0.19 -3.19 16 24 C 0.13 3.89 3.45 45.35 0.16 4.05 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 C -0.15 -3.74 9.11 71.98 0.66 -3.08 16 27 C -0.14 -4.00 9.54 22.36 0.21 -3.78 16 28 C -0.05 -1.14 9.88 22.48 0.22 -0.92 16 29 C -0.09 -2.40 5.75 -21.22 -0.12 -2.52 16 30 C -0.11 -1.95 9.37 22.31 0.21 -1.74 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.09 0.58 8.07 -2.38 -0.02 0.56 16 34 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.09 3.68 5.88 -2.39 -0.01 3.66 16 37 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.36 16.81 5.68 -92.71 -0.53 16.28 16 39 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.11 2.41 7.85 -2.39 -0.02 2.39 16 42 H 0.05 1.40 6.89 -2.39 -0.02 1.38 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.15 4.04 7.60 -2.91 -0.02 4.02 16 46 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 47 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -77.38 382.83 3.14 -74.24 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.40 Total: 32.33 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.78 Total: 6.94 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -4.88 Total: -139.50 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.06 Total: -23.32 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.90 Total: 49.31 kcal Total: -77.38 3.14 -74.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.215 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds