Wall clock time and date at job start Tue Mar 31 2020 22:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39437 * 119.54318 * 2 1 4 4 C 1.35999 * 121.08027 * 179.97438 * 3 2 1 5 5 C 1.40818 * 119.73784 * 0.02562 * 4 3 2 6 6 N 1.33271 * 120.98005 * 180.24576 * 5 4 3 7 7 C 1.31877 * 121.30067 * 180.25428 * 6 5 4 8 8 C 1.48270 * 119.24125 * 179.76183 * 7 6 5 9 9 O 1.21509 * 120.00068 * 179.73036 * 8 7 6 10 10 N 1.34773 * 120.00412 * 359.73133 * 8 7 6 11 11 C 1.47429 * 125.64583 * 0.02562 * 10 8 7 12 12 C 1.54916 * 104.83201 * 204.10780 * 11 10 8 13 13 H 1.08997 * 111.03660 * 81.07608 * 12 11 10 14 14 N 1.46501 * 111.00329 * 204.91390 * 12 11 10 15 15 C 1.36932 * 119.99845 * 267.19520 * 14 12 11 16 16 H 1.08002 * 120.00437 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99901 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00372 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99955 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99982 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99472 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00079 * 19 17 15 23 23 C 1.55156 * 101.58255 * 322.98856 * 12 11 10 24 24 C 1.47024 * 125.65401 * 179.97438 * 10 8 7 25 25 H 1.08996 * 109.88528 * 298.38149 * 24 10 8 26 26 C 1.53005 * 109.87813 * 59.54450 * 24 10 8 27 27 C 1.40278 * 121.51641 * 359.48630 * 7 6 5 28 28 C 1.36506 * 119.81813 * 0.25694 * 27 7 6 29 29 C 1.40760 * 118.24707 * 359.97438 * 28 27 7 30 30 C 1.36139 * 119.54212 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47087 * 89.99829 * 1 2 3 32 32 H 1.08996 * 109.47134 * 209.99617 * 1 2 3 33 33 H 1.08999 * 109.47101 * 330.00467 * 1 2 3 34 34 H 1.07992 * 119.45805 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.12925 * 179.97438 * 4 3 2 36 36 H 1.08995 * 110.36823 * 85.27151 * 11 10 8 37 37 H 1.09004 * 110.36646 * 322.94034 * 11 10 8 38 38 H 0.97000 * 119.99725 * 87.19954 * 14 12 11 39 39 H 0.96993 * 120.00251 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.72315 * 153.86384 * 23 12 11 41 41 H 1.08993 * 110.72217 * 276.96437 * 23 12 11 42 42 H 1.09002 * 109.47006 * 177.80633 * 26 24 10 43 43 H 1.08995 * 109.47113 * 297.80754 * 26 24 10 44 44 H 1.08998 * 109.47470 * 57.81266 * 26 24 10 45 45 H 1.07998 * 120.08966 * 180.23207 * 27 7 6 46 46 H 1.07997 * 120.87785 * 179.97438 * 28 27 7 47 47 H 1.07999 * 120.17206 * 0.03743 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2496 0.0005 5 6 4.2851 0.0460 0.0005 6 7 5.6177 0.0529 0.0059 7 6 6.3087 -1.0704 0.0010 8 6 7.7901 -1.0095 0.0020 9 8 8.4404 -2.0359 0.0024 10 7 8.4156 0.1844 0.0024 11 6 7.7530 1.5014 0.0025 12 6 8.7961 2.4701 -0.6086 13 1 8.7946 2.4108 -1.6970 14 7 8.5619 3.8449 -0.1601 15 6 7.7852 4.6869 -0.9104 16 1 7.3450 4.3374 -1.8326 17 6 7.5629 5.9895 -0.4851 18 7 6.8168 6.7990 -1.2065 19 14 8.3238 6.5939 1.1102 20 1 7.3900 6.3311 2.2346 21 1 9.6025 5.8781 1.3512 22 1 8.5837 8.0527 1.0132 23 6 10.1201 1.9120 -0.0231 24 6 9.8715 0.3891 0.0039 25 1 10.3055 -0.0416 0.9062 26 6 10.4895 -0.2609 -1.2356 27 6 5.6743 -2.3216 0.0005 28 6 4.3110 -2.3914 0.0000 29 6 3.5823 -1.1871 0.0005 30 6 2.1782 -1.1844 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1978 0.0001 36 1 7.5070 1.8022 1.0209 37 1 6.8542 1.4739 -0.6135 38 1 8.9571 4.1588 0.6683 39 1 6.6618 7.7093 -0.9095 40 1 10.9613 2.1541 -0.6726 41 1 10.2887 2.2955 0.9831 42 1 11.5630 -0.0719 -1.2480 43 1 10.3102 -1.3357 -1.2100 44 1 10.0359 0.1619 -2.1321 45 1 6.2629 -3.2271 0.0002 46 1 3.8049 -3.3454 -0.0008 47 1 1.6336 -2.1170 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989162014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:06 Heat of formation + Delta-G solvation = 44.991235 kcal Electronic energy + Delta-G solvation = -29273.099514 eV Core-core repulsion = 25421.282709 eV Total energy + Delta-G solvation = -3851.816805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.14230 -39.81260 -37.83007 -37.07273 -34.32346 -33.74106 -32.53269 -31.52833 -31.18048 -30.35555 -28.79211 -27.55761 -25.48994 -24.53513 -23.89290 -23.22544 -22.22926 -21.62753 -20.27807 -19.30292 -18.06287 -17.70267 -17.33163 -16.87874 -15.84348 -15.62223 -15.31309 -14.88505 -14.43884 -14.36438 -14.26282 -14.02399 -13.68997 -13.58420 -13.42059 -13.29465 -13.21424 -13.01073 -12.72376 -12.53616 -12.42665 -11.97478 -11.89528 -11.66253 -11.57342 -11.47256 -11.32676 -11.05991 -10.83975 -10.69558 -10.61763 -10.34389 -10.06667 -9.95971 -9.63058 -9.41403 -8.90713 -8.83324 -8.35490 -8.28847 -7.34060 -5.81725 -3.18622 0.12284 0.58053 1.84231 2.38070 3.05769 3.24651 3.34621 3.37734 3.43071 4.00040 4.05126 4.38960 4.54104 4.55214 4.58554 4.65950 4.83431 4.92750 4.99845 5.11232 5.14845 5.19018 5.27753 5.32942 5.37828 5.39022 5.53850 5.60683 5.62510 5.68938 5.79931 5.83417 5.87777 5.90755 5.92980 5.96869 6.15943 6.18999 6.23318 6.28969 6.32847 6.41055 6.44933 6.60385 6.67023 6.82831 6.85494 7.63297 7.75467 7.93857 8.28414 8.37050 9.14204 9.86491 10.05319 11.36097 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008329 B = 0.004341 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.015284 B = 6449.272774 C = 9432.289479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.106 4.106 4 C -0.071 4.071 5 C 0.117 3.883 6 N -0.421 5.421 7 C 0.114 3.886 8 C 0.579 3.421 9 O -0.546 6.546 10 N -0.586 5.586 11 C 0.078 3.922 12 C 0.174 3.826 13 H 0.074 0.926 14 N -0.735 5.735 15 C -0.247 4.247 16 H 0.092 0.908 17 C 0.009 3.991 18 N -0.931 5.931 19 Si 0.882 3.118 20 H -0.284 1.284 21 H -0.276 1.276 22 H -0.291 1.291 23 C -0.143 4.143 24 C 0.137 3.863 25 H 0.072 0.928 26 C -0.161 4.161 27 C -0.124 4.124 28 C -0.069 4.069 29 C -0.082 4.082 30 C -0.113 4.113 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.363 0.637 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 -17.849 3.138 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.071 4.071 3 C -0.126 4.126 4 C -0.089 4.089 5 C -0.006 4.006 6 N -0.133 5.133 7 C -0.039 4.039 8 C 0.366 3.634 9 O -0.424 6.424 10 N -0.318 5.318 11 C -0.047 4.047 12 C 0.063 3.937 13 H 0.092 0.908 14 N -0.377 5.377 15 C -0.377 4.377 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.578 5.578 19 Si 0.712 3.288 20 H -0.210 1.210 21 H -0.203 1.203 22 H -0.217 1.217 23 C -0.182 4.182 24 C 0.034 3.966 25 H 0.090 0.910 26 C -0.219 4.219 27 C -0.144 4.144 28 C -0.095 4.095 29 C -0.084 4.084 30 C -0.132 4.132 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.151 0.849 35 H 0.166 0.834 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.197 0.803 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.166 0.834 46 H 0.161 0.839 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.133 -17.436 2.959 19.070 hybrid contribution -0.005 -0.140 1.203 1.211 sum -7.138 -17.576 4.162 19.421 Atomic orbital electron populations 1.20866 0.90790 1.03064 1.02664 1.19786 0.96507 0.93037 0.97765 1.20878 0.94080 0.97904 0.99775 1.21094 0.93659 0.97500 0.96681 1.18983 0.89112 0.92949 0.99601 1.68289 1.07073 1.28972 1.08941 1.21298 0.94265 0.89554 0.98814 1.17557 0.85594 0.82698 0.77552 1.90728 1.65974 1.33482 1.52175 1.48467 1.07527 1.06456 1.69337 1.23733 0.98714 0.79826 1.02438 1.21354 0.90382 0.84399 0.97600 0.90815 1.42638 1.60668 1.07899 1.26459 1.19079 1.22373 0.92058 1.04169 0.89020 1.24645 0.99630 0.96253 0.98149 1.69695 1.42313 1.06789 1.39003 0.86598 0.79286 0.78172 0.84753 1.21037 1.20252 1.21721 1.23078 1.00202 0.92581 1.02297 1.21559 0.80189 0.96175 0.98675 0.90988 1.22139 1.00321 1.01961 0.97527 1.21682 0.95038 0.98664 0.99030 1.21389 0.93633 0.97689 0.96806 1.18946 0.94813 0.93967 1.00659 1.20774 0.92098 0.98182 1.02137 0.90770 0.91424 0.91110 0.84904 0.83450 0.91613 0.87894 0.80325 0.93004 0.89925 0.90866 0.91821 0.91365 0.92253 0.83446 0.83949 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.98 36.00 0.36 -0.43 16 2 C -0.07 -0.69 5.85 -104.93 -0.61 -1.30 16 3 C -0.11 -1.19 9.58 -39.94 -0.38 -1.58 16 4 C -0.07 -0.98 9.99 -39.41 -0.39 -1.37 16 5 C 0.12 1.72 6.61 -84.85 -0.56 1.16 16 6 N -0.42 -6.85 6.51 -7.54 -0.05 -6.90 16 7 C 0.11 1.79 6.73 -82.96 -0.56 1.23 16 8 C 0.58 9.79 7.62 -12.14 -0.09 9.70 16 9 O -0.55 -9.83 15.19 5.36 0.08 -9.74 16 10 N -0.59 -9.73 3.08 -163.95 -0.50 -10.23 16 11 C 0.08 1.40 5.62 -2.52 -0.01 1.38 16 12 C 0.17 3.26 3.71 -65.78 -0.24 3.02 16 13 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 14 N -0.74 -16.58 5.05 -51.35 -0.26 -16.84 16 15 C -0.25 -6.66 10.44 -15.06 -0.16 -6.81 16 16 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 17 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.27 13.97 55.49 0.78 -27.50 16 19 Si 0.88 21.39 27.73 -169.99 -4.71 16.68 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C -0.14 -2.18 6.14 -24.89 -0.15 -2.33 16 24 C 0.14 2.04 3.50 -66.95 -0.23 1.80 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 C -0.16 -2.20 9.05 37.16 0.34 -1.86 16 27 C -0.12 -1.57 9.54 -39.44 -0.38 -1.95 16 28 C -0.07 -0.75 9.88 -39.25 -0.39 -1.13 16 29 C -0.08 -1.00 5.75 -106.71 -0.61 -1.61 16 30 C -0.11 -1.12 9.37 -39.52 -0.37 -1.49 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.10 1.97 5.88 -51.93 -0.31 1.66 16 38 H 0.36 8.07 5.62 -40.82 -0.23 7.84 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 41 H 0.07 1.09 8.00 -51.93 -0.42 0.68 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.15 1.69 7.60 -52.49 -0.40 1.29 16 46 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -32.03 382.37 -10.22 -42.25 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.76 Total: 9.94 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -4.55 Total: -3.42 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.04 Total: -61.46 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.68 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.03 -10.22 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.242 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds