Wall clock time and date at job start Tue Mar 31 2020 22:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39437 * 119.54318 * 2 1 4 4 C 1.35999 * 121.08027 * 179.97438 * 3 2 1 5 5 C 1.40818 * 119.73784 * 0.02562 * 4 3 2 6 6 N 1.33271 * 120.98005 * 180.24576 * 5 4 3 7 7 C 1.31877 * 121.30067 * 180.25428 * 6 5 4 8 8 C 1.48270 * 119.24125 * 179.76183 * 7 6 5 9 9 O 1.21509 * 120.00068 * 179.73036 * 8 7 6 10 10 N 1.34773 * 120.00412 * 359.73133 * 8 7 6 11 11 C 1.47429 * 125.64583 * 0.02562 * 10 8 7 12 12 C 1.54916 * 104.83201 * 204.10780 * 11 10 8 13 13 H 1.08997 * 111.03660 * 81.07608 * 12 11 10 14 14 N 1.46501 * 111.00329 * 204.91390 * 12 11 10 15 15 C 1.36932 * 119.99845 * 267.19520 * 14 12 11 16 16 H 1.08002 * 120.00437 * 0.02562 * 15 14 12 17 17 C 1.38811 * 119.99901 * 179.97438 * 15 14 12 18 18 N 1.31620 * 120.00372 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99955 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 269.99982 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99472 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00079 * 19 17 15 23 23 C 1.55156 * 101.58255 * 322.98856 * 12 11 10 24 24 C 1.47024 * 125.65401 * 179.97438 * 10 8 7 25 25 H 1.08996 * 109.88528 * 298.38149 * 24 10 8 26 26 C 1.53005 * 109.87813 * 59.54450 * 24 10 8 27 27 C 1.40278 * 121.51641 * 359.48630 * 7 6 5 28 28 C 1.36506 * 119.81813 * 0.25694 * 27 7 6 29 29 C 1.40760 * 118.24707 * 359.97438 * 28 27 7 30 30 C 1.36139 * 119.54212 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47087 * 89.99829 * 1 2 3 32 32 H 1.08996 * 109.47134 * 209.99617 * 1 2 3 33 33 H 1.08999 * 109.47101 * 330.00467 * 1 2 3 34 34 H 1.07992 * 119.45805 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.12925 * 179.97438 * 4 3 2 36 36 H 1.08995 * 110.36823 * 85.27151 * 11 10 8 37 37 H 1.09004 * 110.36646 * 322.94034 * 11 10 8 38 38 H 0.97000 * 119.99725 * 87.19954 * 14 12 11 39 39 H 0.96993 * 120.00251 * 180.02562 * 18 17 15 40 40 H 1.09000 * 110.72315 * 153.86384 * 23 12 11 41 41 H 1.08993 * 110.72217 * 276.96437 * 23 12 11 42 42 H 1.09002 * 109.47006 * 177.80633 * 26 24 10 43 43 H 1.08995 * 109.47113 * 297.80754 * 26 24 10 44 44 H 1.08998 * 109.47470 * 57.81266 * 26 24 10 45 45 H 1.07998 * 120.08966 * 180.23207 * 27 7 6 46 46 H 1.07997 * 120.87785 * 179.97438 * 28 27 7 47 47 H 1.07999 * 120.17206 * 0.03743 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2496 0.0005 5 6 4.2851 0.0460 0.0005 6 7 5.6177 0.0529 0.0059 7 6 6.3087 -1.0704 0.0010 8 6 7.7901 -1.0095 0.0020 9 8 8.4404 -2.0359 0.0024 10 7 8.4156 0.1844 0.0024 11 6 7.7530 1.5014 0.0025 12 6 8.7961 2.4701 -0.6086 13 1 8.7946 2.4108 -1.6970 14 7 8.5619 3.8449 -0.1601 15 6 7.7852 4.6869 -0.9104 16 1 7.3450 4.3374 -1.8326 17 6 7.5629 5.9895 -0.4851 18 7 6.8168 6.7990 -1.2065 19 14 8.3238 6.5939 1.1102 20 1 7.3900 6.3311 2.2346 21 1 9.6025 5.8781 1.3512 22 1 8.5837 8.0527 1.0132 23 6 10.1201 1.9120 -0.0231 24 6 9.8715 0.3891 0.0039 25 1 10.3055 -0.0416 0.9062 26 6 10.4895 -0.2609 -1.2356 27 6 5.6743 -2.3216 0.0005 28 6 4.3110 -2.3914 0.0000 29 6 3.5823 -1.1871 0.0005 30 6 2.1782 -1.1844 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1978 0.0001 36 1 7.5070 1.8022 1.0209 37 1 6.8542 1.4739 -0.6135 38 1 8.9571 4.1588 0.6683 39 1 6.6618 7.7093 -0.9095 40 1 10.9613 2.1541 -0.6726 41 1 10.2887 2.2955 0.9831 42 1 11.5630 -0.0719 -1.2480 43 1 10.3102 -1.3357 -1.2100 44 1 10.0359 0.1619 -2.1321 45 1 6.2629 -3.2271 0.0002 46 1 3.8049 -3.3454 -0.0008 47 1 1.6336 -2.1170 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989162014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:05 Heat of formation + Delta-G solvation = 26.417554 kcal Electronic energy + Delta-G solvation = -29273.904930 eV Core-core repulsion = 25421.282709 eV Total energy + Delta-G solvation = -3852.622220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18696 -41.04599 -39.06632 -38.19016 -36.12986 -34.72622 -33.61541 -33.38259 -32.32375 -31.30201 -30.44524 -28.40829 -26.78374 -25.78277 -25.24290 -24.54530 -23.18508 -22.88287 -21.79799 -20.55645 -19.71026 -18.99768 -18.58799 -17.82850 -17.21779 -16.96329 -16.48297 -16.30335 -15.79990 -15.43289 -15.34866 -15.26295 -15.03345 -14.72992 -14.66935 -14.47611 -14.26822 -14.16569 -14.03016 -13.94233 -13.41523 -13.24423 -13.15274 -13.10354 -12.84422 -12.51189 -12.45986 -12.25305 -12.19556 -12.14419 -11.95931 -11.82765 -11.65513 -11.47142 -11.29601 -11.07035 -10.38720 -9.86513 -9.64029 -9.32539 -9.21135 -8.01062 -5.36286 -0.86160 -0.37520 0.88466 1.33011 1.39843 1.42573 1.49559 1.81174 2.14208 2.49341 2.86301 3.03547 3.28495 3.34549 3.54592 3.65638 3.76420 3.78130 3.83300 3.88615 3.98454 4.04322 4.14585 4.31133 4.34234 4.38490 4.41482 4.44247 4.65494 4.70134 4.75293 4.83822 4.88443 4.91060 4.97361 4.99603 5.02207 5.05483 5.15654 5.21120 5.21890 5.30410 5.33840 5.42557 5.50483 5.54495 5.77176 5.84956 6.21735 6.36955 6.58944 7.00314 7.07150 7.80044 8.00915 9.19999 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008329 B = 0.004341 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.015284 B = 6449.272774 C = 9432.289479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.096 4.096 4 C -0.108 4.108 5 C 0.091 3.909 6 N -0.455 5.455 7 C 0.090 3.910 8 C 0.576 3.424 9 O -0.559 6.559 10 N -0.590 5.590 11 C 0.097 3.903 12 C 0.167 3.833 13 H 0.060 0.940 14 N -0.736 5.736 15 C -0.232 4.232 16 H 0.056 0.944 17 C -0.055 4.055 18 N -0.981 5.981 19 Si 0.950 3.050 20 H -0.282 1.282 21 H -0.248 1.248 22 H -0.297 1.297 23 C -0.128 4.128 24 C 0.134 3.866 25 H 0.084 0.916 26 C -0.154 4.154 27 C -0.135 4.135 28 C -0.047 4.047 29 C -0.092 4.092 30 C -0.102 4.102 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.118 0.882 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.369 0.631 39 H 0.258 0.742 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.159 0.841 46 H 0.190 0.810 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -20.363 4.531 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.116 4.116 4 C -0.127 4.127 5 C -0.032 4.032 6 N -0.167 5.167 7 C -0.063 4.063 8 C 0.364 3.636 9 O -0.438 6.438 10 N -0.321 5.321 11 C -0.029 4.029 12 C 0.057 3.943 13 H 0.078 0.922 14 N -0.378 5.378 15 C -0.362 4.362 16 H 0.074 0.926 17 C -0.247 4.247 18 N -0.631 5.631 19 Si 0.777 3.223 20 H -0.208 1.208 21 H -0.172 1.172 22 H -0.223 1.223 23 C -0.167 4.167 24 C 0.031 3.969 25 H 0.102 0.898 26 C -0.212 4.212 27 C -0.156 4.156 28 C -0.072 4.072 29 C -0.094 4.094 30 C -0.121 4.121 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.165 0.835 35 H 0.136 0.864 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.177 0.823 46 H 0.207 0.793 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.779 -20.007 4.360 21.905 hybrid contribution 0.041 0.563 0.689 0.891 sum -7.738 -19.444 5.049 21.528 Atomic orbital electron populations 1.20932 0.88011 1.04418 1.03703 1.20169 0.98397 0.92175 0.96551 1.21162 0.93033 0.99716 0.97706 1.20995 0.94969 0.96502 1.00191 1.19232 0.88866 0.94408 1.00720 1.68143 1.08326 1.29866 1.10337 1.21339 0.93620 0.90791 1.00549 1.17862 0.86416 0.82397 0.76950 1.90699 1.66561 1.33632 1.52939 1.48492 1.08256 1.05839 1.69520 1.23280 0.97852 0.80613 1.01132 1.21454 0.92957 0.82807 0.97094 0.92183 1.42533 1.60156 1.08852 1.26237 1.18978 1.21645 0.92573 1.03039 0.92592 1.25415 1.00766 0.96510 1.02024 1.69875 1.44644 1.07143 1.41398 0.85488 0.79520 0.77216 0.80039 1.20789 1.17202 1.22332 1.23006 0.98342 0.92396 1.02916 1.21728 0.79296 0.95985 0.99869 0.89812 1.22082 1.01874 1.00871 0.96339 1.21828 0.96195 0.97719 0.99823 1.21871 0.92715 0.98918 0.93744 1.19244 0.96175 0.93419 1.00536 1.21221 0.90965 0.99899 0.99976 0.89700 0.89376 0.90566 0.83501 0.86377 0.92798 0.89715 0.79686 0.93334 0.88030 0.89824 0.89039 0.92507 0.93232 0.82302 0.79251 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.98 71.23 0.71 -0.41 16 2 C -0.07 -1.25 5.85 -20.07 -0.12 -1.36 16 3 C -0.10 -2.16 9.58 22.04 0.21 -1.95 16 4 C -0.11 -3.23 9.99 22.38 0.22 -3.01 16 5 C 0.09 2.81 6.61 40.47 0.27 3.07 16 6 N -0.45 -15.79 6.51 -177.77 -1.16 -16.94 16 7 C 0.09 2.89 6.73 42.30 0.28 3.18 16 8 C 0.58 19.95 7.62 86.91 0.66 20.61 16 9 O -0.56 -20.21 15.19 -3.74 -0.06 -20.27 16 10 N -0.59 -20.00 3.08 -790.91 -2.44 -22.43 16 11 C 0.10 3.65 5.62 86.86 0.49 4.14 16 12 C 0.17 6.38 3.71 46.39 0.17 6.56 16 13 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 14 N -0.74 -33.56 5.05 -316.37 -1.60 -35.16 16 15 C -0.23 -12.96 10.44 84.03 0.88 -12.09 16 16 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 17 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 18 N -0.98 -61.97 13.97 21.65 0.30 -61.66 16 19 Si 0.95 44.59 27.73 68.60 1.90 46.49 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 21 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 23 C -0.13 -3.73 6.14 31.78 0.20 -3.54 16 24 C 0.13 3.85 3.50 45.34 0.16 4.01 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 C -0.15 -4.01 9.05 71.98 0.65 -3.36 16 27 C -0.14 -3.33 9.54 22.36 0.21 -3.12 16 28 C -0.05 -0.89 9.88 22.48 0.22 -0.67 16 29 C -0.09 -2.11 5.75 -21.22 -0.12 -2.23 16 30 C -0.10 -1.69 9.37 22.31 0.21 -1.48 16 31 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.09 0.55 8.07 -2.39 -0.02 0.53 16 33 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 34 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 36 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.08 3.54 5.88 -2.39 -0.01 3.52 16 38 H 0.37 16.00 5.62 -92.71 -0.52 15.48 16 39 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.10 2.61 7.83 -2.39 -0.02 2.59 16 41 H 0.08 2.30 8.00 -2.39 -0.02 2.28 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.06 1.63 6.76 -2.39 -0.02 1.61 16 44 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.16 3.45 7.60 -2.91 -0.02 3.42 16 46 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -74.09 382.37 3.14 -70.95 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.41 Total: 33.41 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.78 Total: 5.62 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -4.89 Total: -136.20 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.06 Total: -20.27 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Total: -74.09 3.14 -70.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.369 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds