Wall clock time and date at job start Tue Mar 31 2020 22:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36345 * 119.95697 * 2 1 4 4 C 1.38873 * 121.06096 * 180.02562 * 3 2 1 5 5 C 1.38739 * 120.72323 * 359.97438 * 4 3 2 6 6 C 1.47432 * 120.33650 * 180.02562 * 5 4 3 7 7 O 1.21602 * 119.99876 * 171.67711 * 6 5 4 8 8 N 1.34771 * 119.99699 * 351.67653 * 6 5 4 9 9 C 1.47429 * 125.64851 * 181.12211 * 8 6 5 10 10 C 1.54908 * 104.83378 * 204.15303 * 9 8 6 11 11 H 1.08995 * 111.03464 * 81.08336 * 10 9 8 12 12 N 1.46506 * 111.00117 * 204.91797 * 10 9 8 13 13 C 1.36928 * 119.99824 * 267.19442 * 12 10 9 14 14 H 1.08004 * 120.00272 * 0.02562 * 13 12 10 15 15 C 1.38816 * 119.99792 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99790 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00175 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47384 * 270.00335 * 17 15 13 19 19 H 1.48503 * 109.47069 * 30.00020 * 17 15 13 20 20 H 1.48500 * 109.47347 * 149.99517 * 17 15 13 21 21 C 1.55152 * 101.58156 * 322.99161 * 10 9 8 22 22 C 1.47022 * 125.65079 * 1.15477 * 8 6 5 23 23 H 1.08999 * 110.01360 * 59.42288 * 22 8 6 24 24 C 1.53000 * 109.87838 * 298.33404 * 22 8 6 25 25 C 1.41788 * 119.33219 * 0.27884 * 5 4 3 26 26 N 1.33356 * 121.04159 * 180.32478 * 25 5 4 27 27 C 1.31228 * 121.34608 * 179.76017 * 26 25 5 28 28 C 1.39234 * 121.69902 * 359.65307 * 27 26 25 29 29 C 1.36630 * 119.90662 * 0.02954 * 28 27 26 30 30 C 1.40436 * 119.95536 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47091 * 89.99675 * 1 2 3 32 32 H 1.08998 * 109.47165 * 210.00027 * 1 2 3 33 33 H 1.09006 * 109.46629 * 329.99971 * 1 2 3 34 34 H 1.08001 * 119.47633 * 359.97438 * 3 2 1 35 35 H 1.07997 * 119.63768 * 180.02562 * 4 3 2 36 36 H 1.09005 * 110.36305 * 85.31129 * 9 8 6 37 37 H 1.08996 * 110.36530 * 322.99475 * 9 8 6 38 38 H 0.96996 * 119.99765 * 87.19909 * 12 10 9 39 39 H 0.97003 * 119.99460 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.72403 * 153.86681 * 21 10 9 41 41 H 1.09007 * 110.72555 * 276.96444 * 21 10 9 42 42 H 1.09008 * 109.47150 * 289.86924 * 24 22 8 43 43 H 1.09003 * 109.47283 * 49.87008 * 24 22 8 44 44 H 1.08999 * 109.46761 * 169.87233 * 24 22 8 45 45 H 1.08008 * 119.14701 * 179.67808 * 27 26 25 46 46 H 1.07992 * 120.04449 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.91699 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5764 1.2080 -0.0005 5 6 4.3080 0.0293 -0.0005 6 6 5.7818 0.0676 -0.0005 7 8 6.4167 -0.9582 0.1519 8 7 6.4254 1.2397 -0.1695 9 6 7.8881 1.4181 -0.2137 10 6 8.1204 2.8928 0.2000 11 1 8.0868 3.0050 1.2836 12 7 9.3868 3.3959 -0.3382 13 6 10.5286 3.3197 0.4136 14 1 10.4959 2.8884 1.4033 15 6 11.7284 3.7969 -0.0961 16 7 12.8259 3.7241 0.6268 17 14 11.7853 4.5422 -1.8080 18 1 12.0727 3.4773 -2.8023 19 1 10.4753 5.1690 -2.1188 20 1 12.8528 5.5730 -1.8640 21 6 6.9119 3.5983 -0.4700 22 6 5.7850 2.5521 -0.3395 23 1 5.1659 2.7803 0.5281 24 6 4.9261 2.5518 -1.6057 25 6 3.6241 -1.2127 -0.0060 26 7 4.2932 -2.3663 0.0003 27 6 3.6663 -3.5191 -0.0001 28 6 2.2761 -3.5959 0.0002 29 6 1.5306 -2.4509 0.0002 30 6 2.2083 -1.2168 0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8901 0.5139 34 1 1.6387 2.1112 -0.0004 35 1 4.0923 2.1568 -0.0001 36 1 8.2612 1.2440 -1.2231 37 1 8.3740 0.7449 0.4925 38 1 9.4162 3.7829 -1.2271 39 1 13.6642 4.0579 0.2706 40 1 6.6536 4.5121 0.0651 41 1 7.1229 3.8132 -1.5176 42 1 5.5723 2.5238 -2.4831 43 1 4.2772 1.6759 -1.6044 44 1 4.3170 3.4553 -1.6317 45 1 4.2437 -4.4319 -0.0001 46 1 1.7878 -4.5591 -0.0005 47 1 0.4513 -2.4915 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989219170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:14 Heat of formation + Delta-G solvation = 65.277635 kcal Electronic energy + Delta-G solvation = -29346.364965 eV Core-core repulsion = 25495.427844 eV Total energy + Delta-G solvation = -3850.937121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37607 -41.06055 -38.77898 -38.34263 -36.44248 -35.19847 -33.70914 -32.73294 -32.17562 -31.55565 -30.49709 -28.38378 -26.91335 -25.64773 -25.18808 -24.45942 -23.67560 -22.20373 -21.87772 -20.36427 -19.81781 -19.38828 -18.10857 -18.03771 -17.28716 -17.09743 -16.40409 -16.17978 -16.09815 -15.60573 -15.42693 -15.16099 -14.93859 -14.68262 -14.64774 -14.28903 -14.18999 -14.00300 -13.93352 -13.87841 -13.61786 -13.31579 -13.01152 -12.92647 -12.82293 -12.72174 -12.37056 -12.31237 -12.21152 -11.90546 -11.85057 -11.60078 -11.49994 -11.28397 -11.12577 -11.01856 -10.13873 -9.76599 -9.68016 -9.40059 -9.08508 -8.05154 -5.41780 -0.83262 -0.15743 0.74845 1.36942 1.42549 1.49104 1.73968 1.88397 2.19976 2.46970 3.13157 3.21810 3.30265 3.33034 3.45981 3.68615 3.70915 3.77337 3.86818 3.92405 3.97197 4.02140 4.09591 4.16865 4.28372 4.34957 4.42735 4.47968 4.58911 4.71012 4.77287 4.79738 4.81968 4.86068 4.89335 4.95107 5.04889 5.08828 5.15341 5.18720 5.19728 5.23567 5.34161 5.36373 5.46371 5.60593 5.73420 5.86717 6.18237 6.53856 7.03070 7.07344 7.22753 7.75510 7.96662 9.16099 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.002717 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.782393 B =10303.529402 C =11210.696064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.144 4.144 4 C -0.063 4.063 5 C -0.169 4.169 6 C 0.557 3.443 7 O -0.565 6.565 8 N -0.610 5.610 9 C 0.093 3.907 10 C 0.171 3.829 11 H 0.065 0.935 12 N -0.735 5.735 13 C -0.240 4.240 14 H 0.053 0.947 15 C -0.063 4.063 16 N -0.983 5.983 17 Si 0.958 3.042 18 H -0.285 1.285 19 H -0.239 1.239 20 H -0.294 1.294 21 C -0.123 4.123 22 C 0.115 3.885 23 H 0.116 0.884 24 C -0.184 4.184 25 C 0.139 3.861 26 N -0.507 5.507 27 C 0.117 3.883 28 C -0.178 4.178 29 C -0.050 4.050 30 C -0.134 4.134 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.051 0.949 37 H 0.035 0.965 38 H 0.371 0.629 39 H 0.259 0.741 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.168 0.832 46 H 0.175 0.825 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.969 -4.709 -4.950 37.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 C -0.161 4.161 4 C -0.082 4.082 5 C -0.173 4.173 6 C 0.349 3.651 7 O -0.444 6.444 8 N -0.344 5.344 9 C -0.033 4.033 10 C 0.060 3.940 11 H 0.083 0.917 12 N -0.377 5.377 13 C -0.371 4.371 14 H 0.071 0.929 15 C -0.254 4.254 16 N -0.633 5.633 17 Si 0.785 3.215 18 H -0.211 1.211 19 H -0.163 1.163 20 H -0.221 1.221 21 C -0.162 4.162 22 C 0.013 3.987 23 H 0.133 0.867 24 C -0.241 4.241 25 C 0.016 3.984 26 N -0.215 5.215 27 C -0.054 4.054 28 C -0.198 4.198 29 C -0.075 4.075 30 C -0.136 4.136 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.194 0.806 35 H 0.208 0.792 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.206 0.794 39 H 0.068 0.932 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.136 0.864 45 H 0.185 0.815 46 H 0.193 0.807 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -35.571 -5.210 -4.669 36.252 hybrid contribution 1.003 -0.430 -0.661 1.276 sum -34.568 -5.640 -5.330 35.428 Atomic orbital electron populations 1.21067 0.87210 1.05091 1.04366 1.20442 0.98361 0.91067 0.92582 1.21214 0.92788 0.99765 1.02336 1.23350 0.95967 0.99300 0.89544 1.19660 0.91336 0.93861 1.12401 1.18320 0.88140 0.81943 0.76742 1.90788 1.68998 1.33918 1.50724 1.48545 1.07160 1.07256 1.71407 1.22911 0.80053 1.00452 0.99913 1.21408 0.85532 0.89621 0.97420 0.91687 1.42523 1.04672 1.72862 1.17629 1.19011 0.86840 1.32924 0.98296 0.92928 1.25584 0.94837 1.02221 1.02782 1.69904 0.99866 1.53821 1.39669 0.85370 0.78609 0.78028 0.79523 1.21110 1.16257 1.22079 1.23049 0.92099 0.98201 1.02819 1.22289 0.95130 0.81342 0.99981 0.86733 1.22930 1.00385 1.04822 0.95930 1.18956 0.90763 0.91590 0.97101 1.68267 1.41291 0.98945 1.12963 1.23617 0.93965 0.95834 0.92031 1.22270 0.94157 1.01569 1.01791 1.21988 1.02234 0.90097 0.93200 1.18973 0.92370 0.96718 1.05516 0.88733 0.89853 0.88715 0.80608 0.79223 0.93060 0.94610 0.79424 0.93226 0.86791 0.89446 0.92640 0.91025 0.86447 0.81494 0.80720 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 9.53 71.24 0.68 0.19 16 2 C -0.02 -0.31 5.89 -19.77 -0.12 -0.42 16 3 C -0.14 -1.78 9.57 21.98 0.21 -1.57 16 4 C -0.06 -1.20 6.20 22.54 0.14 -1.06 16 5 C -0.17 -5.09 5.37 -19.86 -0.11 -5.20 16 6 C 0.56 21.60 7.64 86.67 0.66 22.26 16 7 O -0.57 -27.69 15.48 -4.04 -0.06 -27.75 16 8 N -0.61 -20.64 3.06 -800.29 -2.45 -23.09 16 9 C 0.09 3.77 6.61 86.85 0.57 4.34 16 10 C 0.17 6.39 3.71 46.38 0.17 6.57 16 11 H 0.07 2.59 8.09 -2.39 -0.02 2.57 16 12 N -0.73 -33.66 5.05 -316.38 -1.60 -35.26 16 13 C -0.24 -13.81 10.44 84.04 0.88 -12.93 16 14 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 15 C -0.06 -3.72 5.50 84.86 0.47 -3.26 16 16 N -0.98 -63.99 13.97 21.65 0.30 -63.69 16 17 Si 0.96 45.10 27.74 68.60 1.90 47.00 16 18 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.24 -9.66 6.52 99.48 0.65 -9.01 16 20 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 21 C -0.12 -3.02 6.12 31.78 0.19 -2.83 16 22 C 0.11 2.53 2.73 45.34 0.12 2.66 16 23 H 0.12 1.91 6.25 -2.39 -0.01 1.90 16 24 C -0.18 -3.03 7.84 71.98 0.56 -2.47 16 25 C 0.14 4.22 6.61 40.61 0.27 4.49 16 26 N -0.51 -17.46 8.47 -187.95 -1.59 -19.05 16 27 C 0.12 2.82 11.15 85.02 0.95 3.77 16 28 C -0.18 -2.69 10.03 22.13 0.22 -2.47 16 29 C -0.05 -0.69 9.36 22.52 0.21 -0.48 16 30 C -0.13 -2.70 5.74 -21.29 -0.12 -2.82 16 31 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.08 0.18 6.42 -2.39 -0.02 0.16 16 33 H 0.09 0.09 8.08 -2.38 -0.02 0.07 16 34 H 0.18 0.68 8.06 -2.91 -0.02 0.65 16 35 H 0.19 2.83 2.10 -6.29 -0.01 2.81 16 36 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.04 1.70 8.02 -2.39 -0.02 1.68 16 38 H 0.37 15.86 5.62 -92.71 -0.52 15.34 16 39 H 0.26 16.01 8.31 -92.71 -0.77 15.23 16 40 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.04 7.55 -2.38 -0.02 2.02 16 42 H 0.05 1.07 7.89 -2.38 -0.02 1.05 16 43 H 0.07 1.33 4.23 -2.45 -0.01 1.32 16 44 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 46 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 47 H 0.18 0.86 6.42 -2.91 -0.02 0.84 16 Total: -1.00 -92.15 368.31 2.90 -89.25 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.43 Total: 23.82 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.97 Total: 8.78 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -5.34 Total: -141.09 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -92.15 2.90 -89.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989219170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.523 kcal (2) G-P(sol) polarization free energy of solvation -92.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds