Wall clock time and date at job start Tue Mar 31 2020 22:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36354 * 119.95493 * 2 1 4 4 C 1.38868 * 121.05574 * 179.74559 * 3 2 1 5 5 C 1.38746 * 120.72401 * 0.51565 * 4 3 2 6 6 C 1.47430 * 120.32842 * 179.74100 * 5 4 3 7 7 O 1.21607 * 119.99849 * 184.18374 * 6 5 4 8 8 N 1.34776 * 120.00487 * 4.18761 * 6 5 4 9 9 C 1.47426 * 125.64993 * 184.44509 * 8 6 5 10 10 C 1.54906 * 104.83143 * 155.89286 * 9 8 6 11 11 H 1.08998 * 111.00367 * 278.93437 * 10 9 8 12 12 N 1.46500 * 111.00285 * 155.08426 * 10 9 8 13 13 C 1.36929 * 120.00003 * 92.80384 * 12 10 9 14 14 H 1.07997 * 120.00293 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99849 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00005 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47374 * 59.99718 * 17 15 13 19 19 H 1.48499 * 109.47265 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46891 * 299.99702 * 17 15 13 21 21 C 1.55154 * 101.58548 * 37.00582 * 10 9 8 22 22 C 1.47021 * 125.64660 * 4.46778 * 8 6 5 23 23 H 1.09003 * 109.87994 * 300.45653 * 22 8 6 24 24 C 1.52995 * 110.01193 * 61.54853 * 22 8 6 25 25 C 1.41782 * 119.33257 * 359.46694 * 5 4 3 26 26 N 1.33354 * 121.04512 * 180.30129 * 25 5 4 27 27 C 1.31233 * 121.34658 * 179.97438 * 26 25 5 28 28 C 1.39222 * 121.70057 * 359.97438 * 27 26 25 29 29 C 1.36638 * 119.90844 * 359.97438 * 28 27 26 30 30 C 1.40432 * 119.95897 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47345 * 270.02086 * 1 2 3 32 32 H 1.09000 * 109.47324 * 30.02131 * 1 2 3 33 33 H 1.09001 * 109.47183 * 150.02572 * 1 2 3 34 34 H 1.07998 * 119.47051 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.63681 * 180.26175 * 4 3 2 36 36 H 1.08994 * 110.36572 * 37.04933 * 9 8 6 37 37 H 1.09007 * 110.45388 * 274.77648 * 9 8 6 38 38 H 0.96996 * 119.99555 * 272.79850 * 12 10 9 39 39 H 0.97002 * 119.99714 * 179.97438 * 16 15 13 40 40 H 1.08999 * 110.72652 * 206.13889 * 21 10 9 41 41 H 1.09002 * 110.87354 * 82.93353 * 21 10 9 42 42 H 1.09005 * 109.47338 * 175.79617 * 24 22 8 43 43 H 1.09007 * 109.47545 * 295.79762 * 24 22 8 44 44 H 1.09003 * 109.47116 * 55.79323 * 24 22 8 45 45 H 1.08009 * 119.14572 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.05100 * 179.97438 * 28 27 26 47 47 H 1.07992 * 120.92431 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1814 0.0000 4 6 3.5763 1.2081 0.0053 5 6 4.3080 0.0292 0.0000 6 6 5.7818 0.0678 -0.0001 7 8 6.4170 -0.9660 -0.0816 8 7 6.4251 1.2486 0.0902 9 6 7.8846 1.4404 0.0089 10 6 8.0666 2.9080 -0.4523 11 1 7.9415 2.9967 -1.5314 12 7 9.3680 3.4330 -0.0317 13 6 10.4442 3.3509 -0.8743 14 1 10.3337 2.8987 -1.8488 15 6 11.6771 3.8488 -0.4759 16 7 11.8116 4.4004 0.7115 17 14 13.1452 3.7375 -1.6258 18 1 12.8487 4.4750 -2.8800 19 1 14.3351 4.3355 -0.9687 20 1 13.4190 2.3126 -1.9423 21 6 6.9107 3.6171 0.3016 22 6 5.7876 2.5588 0.2866 23 1 5.0978 2.7619 -0.5326 24 6 5.0345 2.5803 1.6181 25 6 3.6240 -1.2127 0.0005 26 7 4.2931 -2.3663 0.0016 27 6 3.6661 -3.5191 0.0026 28 6 2.2760 -3.5959 0.0032 29 6 1.5304 -2.4509 0.0033 30 6 2.2083 -1.2167 0.0005 31 1 -0.3634 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.6385 2.1112 0.0004 35 1 4.0922 2.1569 0.0095 36 1 8.3169 0.7567 -0.7216 37 1 8.3435 1.2902 0.9862 38 1 9.4672 3.8388 0.8437 39 1 12.6733 4.7480 0.9900 40 1 6.5994 4.5173 -0.2285 41 1 7.2026 3.8552 1.3245 42 1 4.6284 3.5773 1.7899 43 1 4.2199 1.8567 1.5867 44 1 5.7185 2.3223 2.4267 45 1 4.2435 -4.4320 0.0038 46 1 1.7876 -4.5592 0.0036 47 1 0.4513 -2.4913 0.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989219177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:18 Heat of formation + Delta-G solvation = 61.791692 kcal Electronic energy + Delta-G solvation = -29268.820321 eV Core-core repulsion = 25417.732039 eV Total energy + Delta-G solvation = -3851.088283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.34174 -41.03555 -38.73498 -38.30692 -36.31826 -35.16954 -33.54154 -32.66433 -32.07235 -31.49442 -30.19704 -28.35761 -26.84846 -25.86320 -25.21449 -24.51339 -23.76846 -22.14469 -21.77623 -20.38612 -19.40410 -19.38081 -18.09756 -17.97582 -17.23673 -17.10407 -16.41718 -16.15275 -16.07233 -15.63731 -15.33055 -15.11399 -14.98298 -14.68353 -14.57025 -14.21705 -14.13915 -13.98807 -13.89854 -13.71218 -13.56717 -13.14265 -12.88930 -12.87978 -12.85476 -12.71354 -12.39603 -12.36482 -12.17169 -11.97149 -11.85157 -11.53983 -11.49213 -11.29740 -11.11030 -10.97883 -10.12857 -9.74463 -9.67834 -9.13866 -9.06082 -7.98835 -5.28787 -0.83495 -0.16009 0.74864 1.45878 1.48980 1.54609 1.73804 1.90462 2.20391 2.53980 3.13488 3.27563 3.32437 3.41088 3.51822 3.71031 3.74696 3.84169 3.89767 3.93719 4.02690 4.07287 4.11632 4.18800 4.32734 4.39138 4.43578 4.49888 4.60875 4.70156 4.76771 4.79733 4.83052 4.86368 4.91542 4.95930 5.06253 5.09399 5.17856 5.19285 5.21545 5.24076 5.35800 5.36869 5.45885 5.50601 5.60945 5.86918 6.22839 6.55640 7.07606 7.23099 7.30140 8.01030 8.25943 9.23640 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.002624 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.224131 B =10669.609844 C =11657.035011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.025 4.025 3 C -0.142 4.142 4 C -0.073 4.073 5 C -0.164 4.164 6 C 0.557 3.443 7 O -0.564 6.564 8 N -0.609 5.609 9 C 0.095 3.905 10 C 0.168 3.832 11 H 0.068 0.932 12 N -0.721 5.721 13 C -0.250 4.250 14 H 0.073 0.927 15 C -0.068 4.068 16 N -0.964 5.964 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.293 1.293 20 H -0.285 1.285 21 C -0.122 4.122 22 C 0.115 3.885 23 H 0.120 0.880 24 C -0.184 4.184 25 C 0.138 3.862 26 N -0.505 5.505 27 C 0.117 3.883 28 C -0.177 4.177 29 C -0.050 4.050 30 C -0.132 4.132 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.176 0.824 35 H 0.193 0.807 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.378 0.622 39 H 0.253 0.747 40 H 0.110 0.890 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.045 0.955 45 H 0.169 0.831 46 H 0.176 0.824 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.309 -7.076 -0.231 34.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.026 4.026 3 C -0.160 4.160 4 C -0.091 4.091 5 C -0.168 4.168 6 C 0.348 3.652 7 O -0.444 6.444 8 N -0.343 5.343 9 C -0.031 4.031 10 C 0.057 3.943 11 H 0.086 0.914 12 N -0.359 5.359 13 C -0.381 4.381 14 H 0.091 0.909 15 C -0.261 4.261 16 N -0.614 5.614 17 Si 0.799 3.201 18 H -0.199 1.199 19 H -0.219 1.219 20 H -0.211 1.211 21 C -0.160 4.160 22 C 0.013 3.987 23 H 0.137 0.863 24 C -0.241 4.241 25 C 0.015 3.985 26 N -0.213 5.213 27 C -0.055 4.055 28 C -0.197 4.197 29 C -0.076 4.076 30 C -0.134 4.134 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.193 0.807 35 H 0.209 0.791 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.211 0.789 39 H 0.062 0.938 40 H 0.129 0.871 41 H 0.095 0.905 42 H 0.131 0.869 43 H 0.098 0.902 44 H 0.064 0.936 45 H 0.186 0.814 46 H 0.193 0.807 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -31.927 -7.567 -0.429 32.814 hybrid contribution 1.352 -0.555 0.003 1.461 sum -30.575 -8.122 -0.426 31.638 Atomic orbital electron populations 1.21064 0.87166 1.05110 1.04363 1.20445 0.98383 0.91053 0.92686 1.21220 0.92787 0.99788 1.02161 1.23420 0.96063 0.99464 0.90193 1.19677 0.91366 0.93862 1.11925 1.18334 0.88131 0.82003 0.76716 1.90781 1.68973 1.33491 1.51124 1.48558 1.07543 1.06784 1.71398 1.22956 0.80023 1.00730 0.99403 1.21453 0.85839 0.89333 0.97668 0.91391 1.42394 1.05251 1.69961 1.18315 1.19572 0.89173 1.31792 0.97611 0.90865 1.25527 1.00439 1.01583 0.98539 1.69790 1.24580 1.46273 1.20767 0.85263 0.78932 0.77523 0.78347 1.19904 1.21888 1.21122 1.22966 0.93151 0.97932 1.01976 1.22271 0.95413 0.81480 0.99492 0.86345 1.22873 1.00734 1.05315 0.95186 1.18947 0.90773 0.91583 0.97196 1.68274 1.41261 0.98918 1.12892 1.23627 0.93969 0.95835 0.92039 1.22279 0.94159 1.01565 1.01681 1.21993 1.02244 0.90066 0.93248 1.18975 0.92356 0.96723 1.05367 0.88760 0.88731 0.89779 0.80683 0.79093 0.94260 0.94168 0.78879 0.93824 0.87150 0.90498 0.86904 0.90182 0.93616 0.81426 0.80656 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 9.53 71.24 0.68 0.12 16 2 C -0.02 -0.34 5.89 -19.77 -0.12 -0.46 16 3 C -0.14 -1.91 9.57 21.98 0.21 -1.70 16 4 C -0.07 -1.48 6.19 22.54 0.14 -1.34 16 5 C -0.16 -5.13 5.62 -19.86 -0.11 -5.24 16 6 C 0.56 22.15 7.62 86.66 0.66 22.82 16 7 O -0.56 -27.96 15.49 -4.05 -0.06 -28.02 16 8 N -0.61 -21.62 3.07 -803.28 -2.47 -24.09 16 9 C 0.10 4.04 6.58 86.85 0.57 4.61 16 10 C 0.17 6.65 3.71 46.38 0.17 6.83 16 11 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 12 N -0.72 -36.12 5.24 -316.40 -1.66 -37.78 16 13 C -0.25 -14.00 9.96 84.04 0.84 -13.16 16 14 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 15 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 16 N -0.96 -58.84 13.06 21.65 0.28 -58.55 16 17 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 21 C -0.12 -3.43 6.12 31.78 0.19 -3.24 16 22 C 0.12 2.83 2.70 45.34 0.12 2.95 16 23 H 0.12 2.18 6.00 -2.39 -0.01 2.17 16 24 C -0.18 -3.62 8.12 71.98 0.58 -3.04 16 25 C 0.14 4.28 6.61 40.61 0.27 4.55 16 26 N -0.51 -17.60 8.45 -187.96 -1.59 -19.19 16 27 C 0.12 2.83 11.15 85.02 0.95 3.78 16 28 C -0.18 -2.71 10.03 22.13 0.22 -2.48 16 29 C -0.05 -0.71 9.36 22.53 0.21 -0.50 16 30 C -0.13 -2.74 5.74 -21.29 -0.12 -2.86 16 31 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.09 0.15 8.08 -2.39 -0.02 0.13 16 33 H 0.08 0.21 6.42 -2.39 -0.02 0.19 16 34 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.19 3.18 2.06 -7.47 -0.02 3.17 16 36 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 37 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.38 20.05 7.77 -92.71 -0.72 19.33 16 39 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.08 2.26 7.72 -2.39 -0.02 2.24 16 42 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.08 1.54 4.29 -2.38 -0.01 1.53 16 44 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 46 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 47 H 0.18 0.91 6.42 -2.91 -0.02 0.89 16 Total: -1.00 -86.83 372.13 2.76 -84.07 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.29 Total: 26.52 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.94 Total: 8.18 kcal Atomic # 7 Polarization: -134.18 SS G_CDS: -5.43 Total: -139.61 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.06 Total: -28.02 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -86.83 2.76 -84.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989219177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.864 kcal (2) G-P(sol) polarization free energy of solvation -86.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds