Wall clock time and date at job start Tue Mar 31 2020 22:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36352 * 119.95763 * 2 1 4 4 C 1.38867 * 121.06131 * 179.97438 * 3 2 1 5 5 C 1.38740 * 120.72676 * 0.04524 * 4 3 2 6 6 C 1.47434 * 120.33599 * 179.97438 * 5 4 3 7 7 O 1.21597 * 119.99871 * 143.50262 * 6 5 4 8 8 N 1.34772 * 120.00019 * 323.49685 * 6 5 4 9 9 C 1.47432 * 125.64886 * 354.72165 * 8 6 5 10 10 C 1.54905 * 104.83259 * 204.08124 * 9 8 6 11 11 H 1.08996 * 111.03712 * 204.90109 * 10 9 8 12 12 N 1.46498 * 111.00575 * 81.06370 * 10 9 8 13 13 C 1.36932 * 120.00082 * 92.80580 * 12 10 9 14 14 H 1.08000 * 120.00149 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00337 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99838 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00465 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47243 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47295 * 300.00198 * 17 15 13 20 20 H 1.48506 * 109.46622 * 59.99733 * 17 15 13 21 21 C 1.55161 * 101.58153 * 322.98851 * 10 9 8 22 22 C 1.47019 * 125.65051 * 174.66601 * 8 6 5 23 23 H 1.09000 * 109.88283 * 59.56691 * 22 8 6 24 24 C 1.52998 * 109.88123 * 298.40674 * 22 8 6 25 25 C 1.41785 * 119.33210 * 0.23341 * 5 4 3 26 26 N 1.33351 * 121.04383 * 180.33888 * 25 5 4 27 27 C 1.31225 * 121.35135 * 179.74012 * 26 25 5 28 28 C 1.39241 * 121.69680 * 359.66456 * 27 26 25 29 29 C 1.36635 * 119.90418 * 0.02562 * 28 27 26 30 30 C 1.40444 * 119.95932 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47144 * 90.00007 * 1 2 3 32 32 H 1.09006 * 109.46905 * 209.99658 * 1 2 3 33 33 H 1.08999 * 109.47500 * 329.99723 * 1 2 3 34 34 H 1.08007 * 119.46708 * 359.97438 * 3 2 1 35 35 H 1.08006 * 119.63751 * 180.02562 * 4 3 2 36 36 H 1.09001 * 110.36520 * 85.23962 * 9 8 6 37 37 H 1.09000 * 110.36496 * 322.91867 * 9 8 6 38 38 H 0.97003 * 120.00115 * 272.80137 * 12 10 9 39 39 H 0.96998 * 119.99836 * 0.02562 * 16 15 13 40 40 H 1.09004 * 110.71747 * 153.86602 * 21 10 9 41 41 H 1.09000 * 110.72007 * 276.96187 * 21 10 9 42 42 H 1.09007 * 109.47244 * 302.19155 * 24 22 8 43 43 H 1.09004 * 109.47271 * 62.19073 * 24 22 8 44 44 H 1.09000 * 109.47065 * 182.18958 * 24 22 8 45 45 H 1.08001 * 119.15555 * 179.68356 * 27 26 25 46 46 H 1.07997 * 120.04581 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.91672 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5763 1.2081 0.0005 5 6 4.3080 0.0293 0.0001 6 6 5.7818 0.0678 0.0001 7 8 6.4117 -0.7628 0.6262 8 7 6.4310 1.0235 -0.6939 9 6 5.8013 2.0197 -1.5796 10 6 6.9198 2.4351 -2.5675 11 1 6.7377 3.4325 -2.9678 12 7 7.0562 1.4556 -3.6483 13 6 6.3708 1.6298 -4.8208 14 1 5.7292 2.4891 -4.9488 15 6 6.4997 0.7014 -5.8447 16 7 7.2812 -0.3462 -5.6887 17 14 5.5641 0.9386 -7.4440 18 1 5.8716 -0.1822 -8.3684 19 1 4.1058 0.9649 -7.1652 20 1 5.9716 2.2221 -8.0701 21 6 8.1685 2.4249 -1.6466 22 6 7.8843 1.2459 -0.6922 23 1 8.3967 0.3511 -1.0454 24 6 8.3555 1.5953 0.7209 25 6 3.6241 -1.2127 -0.0059 26 7 4.2932 -2.3662 0.0003 27 6 3.6665 -3.5190 -0.0001 28 6 2.2762 -3.5959 0.0000 29 6 1.5306 -2.4509 -0.0001 30 6 2.2083 -1.2168 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6385 2.1112 -0.0004 35 1 4.0922 2.1570 0.0009 36 1 5.4652 2.8814 -1.0028 37 1 4.9655 1.5736 -2.1186 38 1 7.6322 0.6836 -3.5333 39 1 7.7667 -0.4695 -4.8581 40 1 9.0735 2.2424 -2.2261 41 1 8.2481 3.3612 -1.0944 42 1 7.8239 2.4793 1.0731 43 1 8.1517 0.7586 1.3891 44 1 9.4266 1.7968 0.7072 45 1 4.2438 -4.4318 -0.0001 46 1 1.7879 -4.5592 0.0000 47 1 0.4514 -2.4915 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989219182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:22 Heat of formation + Delta-G solvation = 40.931841 kcal Electronic energy + Delta-G solvation = -29919.298253 eV Core-core repulsion = 26067.305419 eV Total energy + Delta-G solvation = -3851.992834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08081 -39.64490 -37.36740 -37.12423 -34.24299 -34.16477 -31.86723 -31.29775 -30.83882 -30.56973 -28.19715 -27.44632 -25.57154 -24.32890 -23.70700 -23.53885 -22.82365 -20.95342 -20.15630 -18.88094 -18.28144 -17.46690 -17.11541 -16.96534 -16.16703 -15.54505 -15.07193 -14.69761 -14.64672 -14.33383 -14.16237 -13.83046 -13.65512 -13.55844 -13.45429 -13.37186 -13.20456 -12.99107 -12.58476 -12.37995 -12.27485 -12.00231 -11.93603 -11.63823 -11.43920 -11.28396 -11.05298 -10.86702 -10.68932 -10.49919 -10.42178 -10.24919 -9.99557 -9.67781 -9.20676 -9.16068 -9.01003 -8.82836 -8.23993 -8.10018 -7.07839 -6.12565 -3.13909 0.17219 0.79403 1.77750 2.74307 3.20784 3.46366 3.48819 3.52444 3.70239 4.14502 4.27703 4.40775 4.59348 4.63833 4.67635 4.70165 4.81821 4.95037 5.05225 5.13350 5.15141 5.25163 5.29093 5.33427 5.39594 5.46062 5.55344 5.60817 5.66794 5.70710 5.77192 5.83424 5.86530 5.89723 5.93344 5.99402 6.11233 6.15030 6.18977 6.27684 6.37777 6.39498 6.44284 6.57165 6.64090 6.74861 6.86333 7.76001 7.94455 8.04788 8.62720 8.72637 9.17830 10.04586 10.18934 11.35066 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008688 B = 0.004450 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.882688 B = 6290.936931 C = 7633.833062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.047 4.047 3 C -0.126 4.126 4 C -0.062 4.062 5 C -0.099 4.099 6 C 0.578 3.422 7 O -0.519 6.519 8 N -0.598 5.598 9 C 0.068 3.932 10 C 0.174 3.826 11 H 0.075 0.925 12 N -0.722 5.722 13 C -0.338 4.338 14 H 0.066 0.934 15 C -0.041 4.041 16 N -0.938 5.938 17 Si 1.079 2.921 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.294 1.294 21 C -0.140 4.140 22 C 0.140 3.860 23 H 0.072 0.928 24 C -0.158 4.158 25 C 0.167 3.833 26 N -0.446 5.446 27 C 0.132 3.868 28 C -0.177 4.177 29 C -0.061 4.061 30 C -0.107 4.107 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.369 0.631 39 H 0.256 0.744 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.159 0.841 46 H 0.137 0.863 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 2.526 14.640 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.048 4.048 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.102 4.102 6 C 0.366 3.634 7 O -0.396 6.396 8 N -0.332 5.332 9 C -0.058 4.058 10 C 0.062 3.938 11 H 0.093 0.907 12 N -0.362 5.362 13 C -0.469 4.469 14 H 0.084 0.916 15 C -0.239 4.239 16 N -0.583 5.583 17 Si 0.909 3.091 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.221 1.221 21 C -0.179 4.179 22 C 0.037 3.963 23 H 0.090 0.910 24 C -0.216 4.216 25 C 0.044 3.956 26 N -0.153 5.153 27 C -0.040 4.040 28 C -0.197 4.197 29 C -0.086 4.086 30 C -0.109 4.109 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.203 0.797 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.176 0.824 46 H 0.155 0.845 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.597 1.672 13.429 17.822 hybrid contribution -0.580 0.363 1.470 1.621 sum -12.177 2.035 14.899 19.349 Atomic orbital electron populations 1.20894 0.90506 1.03171 1.03002 1.19827 0.96182 0.91978 0.96804 1.20684 0.93780 0.97930 1.01980 1.21569 0.94088 0.97745 0.94847 1.19786 0.93740 0.92010 1.04698 1.17464 0.86234 0.80147 0.79563 1.90760 1.67852 1.37196 1.43750 1.48308 1.07575 1.31873 1.45462 1.23506 0.99753 0.90496 0.92078 1.21270 0.90871 0.94227 0.87480 0.90714 1.42331 1.55070 1.25969 1.12876 1.20011 1.24279 1.09330 0.93280 0.91599 1.25769 1.01187 0.94412 1.02538 1.70865 1.30298 1.29163 1.27933 0.83271 0.74918 0.75442 0.75449 1.21020 1.22317 1.22139 1.23099 1.00367 0.97091 0.97338 1.21442 0.80964 0.98520 0.95396 0.90983 1.22118 1.00777 1.01775 0.96951 1.18542 0.88949 0.91796 0.96295 1.68175 1.39356 0.97484 1.10256 1.23111 0.91965 0.96232 0.92741 1.21922 0.95606 0.99520 1.02618 1.21458 1.00331 0.91281 0.95578 1.18621 0.93647 0.94377 1.04258 0.90336 0.91168 0.90845 0.84942 0.84338 0.92733 0.90231 0.79735 0.93247 0.89971 0.90626 0.92835 0.91734 0.91933 0.82373 0.84500 0.84249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.53 36.00 0.34 -0.58 16 2 C -0.05 -0.55 5.89 -104.47 -0.62 -1.17 16 3 C -0.13 -1.47 9.57 -40.03 -0.38 -1.86 16 4 C -0.06 -0.88 8.16 -39.16 -0.32 -1.20 16 5 C -0.10 -1.77 5.44 -104.61 -0.57 -2.34 16 6 C 0.58 11.64 7.10 -12.52 -0.09 11.55 16 7 O -0.52 -11.85 15.27 5.28 0.08 -11.77 16 8 N -0.60 -11.01 3.06 -164.27 -0.50 -11.52 16 9 C 0.07 1.18 4.90 -2.53 -0.01 1.16 16 10 C 0.17 3.29 3.72 -65.78 -0.24 3.05 16 11 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 12 N -0.72 -17.73 5.23 -51.35 -0.27 -18.00 16 13 C -0.34 -9.29 9.96 -15.06 -0.15 -9.44 16 14 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 15 C -0.04 -1.18 5.50 -17.43 -0.10 -1.27 16 16 N -0.94 -29.39 13.70 55.49 0.76 -28.63 16 17 Si 1.08 25.86 29.92 -169.99 -5.09 20.77 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.14 -2.21 6.07 -24.89 -0.15 -2.36 16 22 C 0.14 2.40 3.43 -66.95 -0.23 2.17 16 23 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 24 C -0.16 -2.30 9.10 37.16 0.34 -1.96 16 25 C 0.17 3.00 6.58 -84.58 -0.56 2.44 16 26 N -0.45 -8.41 9.03 -10.76 -0.10 -8.51 16 27 C 0.13 1.89 11.15 -17.44 -0.19 1.69 16 28 C -0.18 -1.97 10.03 -39.79 -0.40 -2.37 16 29 C -0.06 -0.69 9.36 -39.19 -0.37 -1.05 16 30 C -0.11 -1.52 5.74 -106.82 -0.61 -2.13 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.45 6.42 -51.93 -0.33 0.12 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.14 1.71 5.73 -52.48 -0.30 1.41 16 36 H 0.05 0.76 6.92 -51.93 -0.36 0.40 16 37 H 0.08 1.58 7.27 -51.93 -0.38 1.20 16 38 H 0.37 9.75 6.70 -40.82 -0.27 9.47 16 39 H 0.26 8.03 6.77 -40.82 -0.28 7.75 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.06 7.08 -51.93 -0.37 0.69 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.14 1.08 6.42 -52.49 -0.34 0.74 16 LS Contribution 378.81 15.07 5.71 5.71 Total: -1.00 -36.62 378.81 -10.18 -46.80 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.46 Total: 10.81 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -4.31 Total: -5.66 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.11 Total: -66.65 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.09 Total: 20.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.62 -10.18 -46.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989219182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.729 kcal (2) G-P(sol) polarization free energy of solvation -36.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds