Wall clock time and date at job start Tue Mar 31 2020 22:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36352 * 119.95763 * 2 1 4 4 C 1.38867 * 121.06131 * 179.97438 * 3 2 1 5 5 C 1.38740 * 120.72676 * 0.04524 * 4 3 2 6 6 C 1.47434 * 120.33599 * 179.97438 * 5 4 3 7 7 O 1.21597 * 119.99871 * 143.50262 * 6 5 4 8 8 N 1.34772 * 120.00019 * 323.49685 * 6 5 4 9 9 C 1.47432 * 125.64886 * 354.72165 * 8 6 5 10 10 C 1.54905 * 104.83259 * 204.08124 * 9 8 6 11 11 H 1.08996 * 111.03712 * 204.90109 * 10 9 8 12 12 N 1.46498 * 111.00575 * 81.06370 * 10 9 8 13 13 C 1.36932 * 120.00082 * 92.80580 * 12 10 9 14 14 H 1.08000 * 120.00149 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00337 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99838 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00465 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47243 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47295 * 300.00198 * 17 15 13 20 20 H 1.48506 * 109.46622 * 59.99733 * 17 15 13 21 21 C 1.55161 * 101.58153 * 322.98851 * 10 9 8 22 22 C 1.47019 * 125.65051 * 174.66601 * 8 6 5 23 23 H 1.09000 * 109.88283 * 59.56691 * 22 8 6 24 24 C 1.52998 * 109.88123 * 298.40674 * 22 8 6 25 25 C 1.41785 * 119.33210 * 0.23341 * 5 4 3 26 26 N 1.33351 * 121.04383 * 180.33888 * 25 5 4 27 27 C 1.31225 * 121.35135 * 179.74012 * 26 25 5 28 28 C 1.39241 * 121.69680 * 359.66456 * 27 26 25 29 29 C 1.36635 * 119.90418 * 0.02562 * 28 27 26 30 30 C 1.40444 * 119.95932 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47144 * 90.00007 * 1 2 3 32 32 H 1.09006 * 109.46905 * 209.99658 * 1 2 3 33 33 H 1.08999 * 109.47500 * 329.99723 * 1 2 3 34 34 H 1.08007 * 119.46708 * 359.97438 * 3 2 1 35 35 H 1.08006 * 119.63751 * 180.02562 * 4 3 2 36 36 H 1.09001 * 110.36520 * 85.23962 * 9 8 6 37 37 H 1.09000 * 110.36496 * 322.91867 * 9 8 6 38 38 H 0.97003 * 120.00115 * 272.80137 * 12 10 9 39 39 H 0.96998 * 119.99836 * 0.02562 * 16 15 13 40 40 H 1.09004 * 110.71747 * 153.86602 * 21 10 9 41 41 H 1.09000 * 110.72007 * 276.96187 * 21 10 9 42 42 H 1.09007 * 109.47244 * 302.19155 * 24 22 8 43 43 H 1.09004 * 109.47271 * 62.19073 * 24 22 8 44 44 H 1.09000 * 109.47065 * 182.18958 * 24 22 8 45 45 H 1.08001 * 119.15555 * 179.68356 * 27 26 25 46 46 H 1.07997 * 120.04581 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.91672 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5763 1.2081 0.0005 5 6 4.3080 0.0293 0.0001 6 6 5.7818 0.0678 0.0001 7 8 6.4117 -0.7628 0.6262 8 7 6.4310 1.0235 -0.6939 9 6 5.8013 2.0197 -1.5796 10 6 6.9198 2.4351 -2.5675 11 1 6.7377 3.4325 -2.9678 12 7 7.0562 1.4556 -3.6483 13 6 6.3708 1.6298 -4.8208 14 1 5.7292 2.4891 -4.9488 15 6 6.4997 0.7014 -5.8447 16 7 7.2812 -0.3462 -5.6887 17 14 5.5641 0.9386 -7.4440 18 1 5.8716 -0.1822 -8.3684 19 1 4.1058 0.9649 -7.1652 20 1 5.9716 2.2221 -8.0701 21 6 8.1685 2.4249 -1.6466 22 6 7.8843 1.2459 -0.6922 23 1 8.3967 0.3511 -1.0454 24 6 8.3555 1.5953 0.7209 25 6 3.6241 -1.2127 -0.0059 26 7 4.2932 -2.3662 0.0003 27 6 3.6665 -3.5190 -0.0001 28 6 2.2762 -3.5959 0.0000 29 6 1.5306 -2.4509 -0.0001 30 6 2.2083 -1.2168 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6385 2.1112 -0.0004 35 1 4.0922 2.1570 0.0009 36 1 5.4652 2.8814 -1.0028 37 1 4.9655 1.5736 -2.1186 38 1 7.6322 0.6836 -3.5333 39 1 7.7667 -0.4695 -4.8581 40 1 9.0735 2.2424 -2.2261 41 1 8.2481 3.3612 -1.0944 42 1 7.8239 2.4793 1.0731 43 1 8.1517 0.7586 1.3891 44 1 9.4266 1.7968 0.7072 45 1 4.2438 -4.4318 -0.0001 46 1 1.7879 -4.5592 0.0000 47 1 0.4514 -2.4915 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989219182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:21 Heat of formation + Delta-G solvation = 16.349268 kcal Electronic energy + Delta-G solvation = -29920.364233 eV Core-core repulsion = 26067.305419 eV Total energy + Delta-G solvation = -3853.058814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16767 -41.01204 -38.77707 -38.24197 -36.14967 -35.22488 -33.25424 -32.95423 -31.86400 -31.59223 -29.95755 -28.36932 -26.90284 -25.62689 -25.30935 -24.75474 -24.10037 -22.18645 -21.58273 -20.16472 -19.50499 -19.27492 -18.30200 -18.07204 -17.62138 -16.83749 -16.70909 -16.04480 -15.80618 -15.62393 -15.46675 -15.28249 -15.07261 -14.89344 -14.59599 -14.35546 -14.25051 -14.09786 -13.88532 -13.70996 -13.32735 -13.15742 -13.04065 -12.82299 -12.77220 -12.57908 -12.46607 -12.25513 -12.17987 -12.09627 -11.88743 -11.72127 -11.42503 -11.22959 -11.12225 -10.94860 -10.30944 -9.85964 -9.72942 -9.21009 -9.06785 -8.39918 -5.34445 -0.83956 -0.21841 0.73153 1.55326 1.65766 1.66281 1.81536 1.87132 2.16537 2.70406 3.05868 3.25459 3.33129 3.38283 3.60484 3.63488 3.72344 3.79964 3.81517 3.88964 3.90832 4.00763 4.05707 4.26539 4.34288 4.36670 4.37860 4.50562 4.60395 4.62172 4.65673 4.72786 4.81478 4.83635 4.85529 4.94359 5.00421 5.03080 5.08250 5.11646 5.14390 5.18471 5.25947 5.38630 5.47208 5.56659 5.60703 5.81706 6.44331 6.51121 6.98165 7.05307 7.17160 7.94507 8.10522 9.10809 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008688 B = 0.004450 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.882688 B = 6290.936931 C = 7633.833062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.033 4.033 3 C -0.136 4.136 4 C -0.048 4.048 5 C -0.155 4.155 6 C 0.569 3.431 7 O -0.566 6.566 8 N -0.601 5.601 9 C 0.080 3.920 10 C 0.160 3.840 11 H 0.093 0.907 12 N -0.739 5.739 13 C -0.324 4.324 14 H 0.079 0.921 15 C -0.110 4.110 16 N -0.979 5.979 17 Si 1.126 2.874 18 H -0.300 1.300 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.121 4.121 22 C 0.133 3.867 23 H 0.030 0.970 24 C -0.144 4.144 25 C 0.132 3.868 26 N -0.516 5.516 27 C 0.117 3.883 28 C -0.175 4.175 29 C -0.051 4.051 30 C -0.129 4.129 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.353 0.647 39 H 0.238 0.762 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.171 0.829 46 H 0.180 0.820 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 5.249 15.195 22.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.034 4.034 3 C -0.153 4.153 4 C -0.068 4.068 5 C -0.159 4.159 6 C 0.360 3.640 7 O -0.446 6.446 8 N -0.334 5.334 9 C -0.045 4.045 10 C 0.050 3.950 11 H 0.111 0.889 12 N -0.378 5.378 13 C -0.455 4.455 14 H 0.097 0.903 15 C -0.300 4.300 16 N -0.627 5.627 17 Si 0.951 3.049 18 H -0.226 1.226 19 H -0.204 1.204 20 H -0.195 1.195 21 C -0.160 4.160 22 C 0.030 3.970 23 H 0.049 0.951 24 C -0.202 4.202 25 C 0.010 3.990 26 N -0.224 5.224 27 C -0.054 4.054 28 C -0.194 4.194 29 C -0.076 4.076 30 C -0.131 4.131 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.121 0.879 37 H 0.070 0.930 38 H 0.184 0.816 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.138 0.862 42 H 0.095 0.905 43 H 0.055 0.945 44 H 0.104 0.896 45 H 0.188 0.812 46 H 0.197 0.803 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.614 4.475 14.024 21.459 hybrid contribution 0.588 -0.488 1.383 1.580 sum -15.025 3.987 15.407 21.887 Atomic orbital electron populations 1.21041 0.86882 1.05267 1.04227 1.20413 0.98574 0.90896 0.93492 1.21142 0.92739 0.99813 1.01655 1.21833 0.95430 0.96834 0.92667 1.19842 0.92473 0.93913 1.09675 1.18039 0.87601 0.79517 0.78886 1.90698 1.69151 1.38855 1.45887 1.48428 1.08002 1.31881 1.45073 1.23390 0.97915 0.91323 0.91847 1.21652 0.93025 0.93441 0.86879 0.88912 1.42587 1.54731 1.26641 1.13889 1.20436 1.22743 1.08616 0.93748 0.90306 1.27231 1.02159 0.94348 1.06308 1.70999 1.32921 1.31434 1.27377 0.82663 0.74668 0.75792 0.71781 1.22624 1.20428 1.19519 1.23019 0.98405 0.98224 0.96318 1.21538 0.80430 0.97592 0.97448 0.95127 1.22000 1.02444 1.01471 0.94306 1.18915 0.90996 0.91503 0.97572 1.68083 1.41798 0.99155 1.13352 1.23603 0.94184 0.95632 0.92009 1.22299 0.94037 1.01681 1.01416 1.22017 1.02370 0.89976 0.93250 1.19007 0.92363 0.96898 1.04840 0.89175 0.89442 0.88535 0.80885 0.82928 0.87938 0.93005 0.81608 0.95205 0.90831 0.86169 0.90543 0.94479 0.89622 0.81190 0.80250 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.53 71.24 0.68 -0.54 16 2 C -0.03 -0.67 5.89 -19.77 -0.12 -0.79 16 3 C -0.14 -2.80 9.57 21.98 0.21 -2.59 16 4 C -0.05 -1.31 8.16 22.54 0.18 -1.13 16 5 C -0.16 -5.87 5.44 -19.86 -0.11 -5.98 16 6 C 0.57 24.67 7.10 86.67 0.62 25.28 16 7 O -0.57 -28.50 15.27 -4.02 -0.06 -28.56 16 8 N -0.60 -22.97 3.06 -791.89 -2.43 -25.40 16 9 C 0.08 2.72 4.90 86.85 0.43 3.15 16 10 C 0.16 5.91 3.72 46.38 0.17 6.09 16 11 H 0.09 3.13 8.09 -2.39 -0.02 3.11 16 12 N -0.74 -37.25 5.23 -316.39 -1.66 -38.90 16 13 C -0.32 -17.92 9.96 84.03 0.84 -17.09 16 14 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 15 C -0.11 -6.49 5.50 84.86 0.47 -6.02 16 16 N -0.98 -64.16 13.70 21.65 0.30 -63.86 16 17 Si 1.13 52.38 29.92 68.60 2.05 54.43 16 18 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 C -0.12 -3.70 6.07 31.78 0.19 -3.51 16 22 C 0.13 4.72 3.43 45.34 0.16 4.88 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 C -0.14 -4.18 9.10 71.98 0.66 -3.53 16 25 C 0.13 5.02 6.58 40.61 0.27 5.28 16 26 N -0.52 -21.14 9.03 -187.95 -1.70 -22.84 16 27 C 0.12 3.53 11.15 85.02 0.95 4.48 16 28 C -0.17 -3.66 10.03 22.14 0.22 -3.43 16 29 C -0.05 -1.02 9.36 22.52 0.21 -0.81 16 30 C -0.13 -3.54 5.74 -21.29 -0.12 -3.67 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.63 6.42 -2.38 -0.02 0.61 16 33 H 0.10 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.15 3.48 5.73 -2.91 -0.02 3.47 16 36 H 0.10 2.51 6.92 -2.39 -0.02 2.49 16 37 H 0.05 2.06 7.27 -2.39 -0.02 2.05 16 38 H 0.35 19.83 6.70 -92.71 -0.62 19.21 16 39 H 0.24 15.92 6.77 -92.71 -0.63 15.29 16 40 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.12 2.65 7.86 -2.39 -0.02 2.63 16 42 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.04 1.28 7.08 -2.39 -0.02 1.26 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.17 4.25 8.06 -2.91 -0.02 4.22 16 46 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.19 1.91 6.42 -2.91 -0.02 1.89 16 Total: -1.00 -90.35 378.81 2.93 -87.42 By element: Atomic # 1 Polarization: 37.09 SS G_CDS: 0.52 Total: 37.61 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.90 Total: 0.09 kcal Atomic # 7 Polarization: -145.51 SS G_CDS: -5.48 Total: -150.99 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.06 Total: -28.56 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.05 Total: 54.43 kcal Total: -90.35 2.93 -87.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989219182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.773 kcal (2) G-P(sol) polarization free energy of solvation -90.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds