Wall clock time and date at job start Tue Mar 31 2020 22:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36538 * 120.09030 * 2 1 4 4 C 1.40721 * 118.24243 * 179.97438 * 3 2 1 5 5 C 1.40431 * 121.28963 * 179.97438 * 4 3 2 6 6 C 1.36120 * 119.64704 * 179.97438 * 5 4 3 7 7 C 1.39445 * 120.92289 * 0.04416 * 6 5 4 8 8 C 1.35988 * 121.08933 * 359.97438 * 7 6 5 9 9 C 1.40838 * 119.73558 * 0.02562 * 8 7 6 10 10 N 1.33236 * 120.98683 * 180.25283 * 9 8 7 11 11 C 1.31897 * 121.30035 * 180.26321 * 10 9 8 12 12 C 1.48270 * 119.24456 * 179.75538 * 11 10 9 13 13 O 1.21500 * 120.00143 * 173.86612 * 12 11 10 14 14 N 1.34774 * 119.99886 * 353.86569 * 12 11 10 15 15 C 1.47019 * 125.64945 * 0.02562 * 14 12 11 16 16 C 1.54320 * 107.27461 * 178.90020 * 15 14 12 17 17 H 1.09003 * 110.71943 * 96.17169 * 16 15 14 18 18 N 1.46500 * 110.87772 * 219.37299 * 16 15 14 19 19 C 1.36929 * 120.00361 * 268.61233 * 18 16 15 20 20 H 1.07998 * 120.00202 * 0.02562 * 19 18 16 21 21 C 1.38813 * 120.00201 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99942 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46883 * 90.00382 * 23 21 19 25 25 H 1.48501 * 109.47343 * 210.00399 * 23 21 19 26 26 H 1.48499 * 109.47223 * 330.00228 * 23 21 19 27 27 C 1.55160 * 102.94450 * 337.81202 * 16 15 14 28 28 C 1.47468 * 125.62967 * 179.97438 * 14 12 11 29 29 H 1.09003 * 110.35093 * 85.32440 * 28 14 12 30 30 C 1.52998 * 110.40814 * 322.98843 * 28 14 12 31 31 H 1.08997 * 109.47499 * 263.14201 * 1 2 3 32 32 H 1.09006 * 109.47132 * 23.13825 * 1 2 3 33 33 H 1.09001 * 109.47295 * 143.13655 * 1 2 3 34 34 H 1.08005 * 120.87820 * 359.94998 * 3 2 1 35 35 H 1.08000 * 120.17413 * 0.02562 * 5 4 3 36 36 H 1.07998 * 119.53909 * 180.02562 * 6 5 4 37 37 H 1.08003 * 119.45405 * 179.97438 * 7 6 5 38 38 H 1.07999 * 120.13696 * 180.02562 * 8 7 6 39 39 H 1.09002 * 109.88217 * 59.48611 * 15 14 12 40 40 H 1.08997 * 110.01147 * 298.39545 * 15 14 12 41 41 H 0.97002 * 119.99660 * 88.60798 * 18 16 15 42 42 H 0.97003 * 120.00422 * 179.97438 * 22 21 19 43 43 H 1.08995 * 111.00591 * 153.57103 * 27 16 15 44 44 H 1.08995 * 111.00279 * 277.38898 * 27 16 15 45 45 H 1.09005 * 109.47369 * 304.59841 * 30 28 14 46 46 H 1.09007 * 109.47242 * 64.59060 * 30 28 14 47 47 H 1.08997 * 109.47872 * 184.59208 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 0.0006 5 6 4.3657 2.3119 0.0001 6 6 5.7244 2.2290 0.0011 7 6 6.3668 0.9914 0.0018 8 6 5.6567 -0.1684 0.0020 9 6 4.2490 -0.1255 0.0008 10 7 3.5286 -1.2464 0.0060 11 6 2.2101 -1.2135 -0.0002 12 6 1.4537 -2.4888 0.0004 13 8 0.2434 -2.4772 0.1072 14 7 2.1086 -3.6607 -0.1176 15 6 3.5640 -3.8192 -0.2529 16 6 3.8551 -5.3328 -0.3283 17 1 3.9448 -5.6570 -1.3651 18 7 5.0658 -5.6697 0.4246 19 6 6.2823 -5.6806 -0.2040 20 1 6.3493 -5.4403 -1.2547 21 6 7.4295 -5.9993 0.5096 22 7 7.3479 -6.2916 1.7903 23 14 9.0891 -6.0134 -0.3477 24 1 9.7055 -4.6655 -0.2551 25 1 9.9757 -7.0092 0.3062 26 1 8.9054 -6.3766 -1.7758 27 6 2.6022 -5.9613 0.3369 28 6 1.4838 -4.9964 -0.1311 29 1 1.1588 -5.2527 -1.1395 30 6 0.3012 -5.0421 0.8385 31 1 -0.3634 -0.1227 1.0203 32 1 -0.3634 0.9450 -0.4038 33 1 -0.3634 -0.8222 -0.6165 34 1 1.6674 2.1257 -0.0008 35 1 3.8806 3.2768 -0.0004 36 1 6.3130 3.1345 0.0012 37 1 7.4462 0.9533 0.0023 38 1 6.1701 -1.1185 0.0029 39 1 4.0660 -3.3879 0.6132 40 1 3.9094 -3.3294 -1.1633 41 1 5.0057 -5.8851 1.3685 42 1 8.1495 -6.5147 2.2890 43 1 2.4276 -6.9710 -0.0346 44 1 2.6930 -5.9571 1.4231 45 1 0.6346 -4.7442 1.8327 46 1 -0.4760 -4.3587 0.4962 47 1 -0.0978 -6.0556 0.8777 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989222323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:24 Heat of formation + Delta-G solvation = 30.637174 kcal Electronic energy + Delta-G solvation = -29670.098434 eV Core-core repulsion = 25817.659191 eV Total energy + Delta-G solvation = -3852.439244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24561 -40.97331 -39.02776 -37.87463 -36.04248 -35.18579 -33.29221 -33.01784 -32.51011 -31.05735 -30.09120 -28.03154 -26.83938 -26.29998 -25.65281 -23.69885 -23.14385 -23.03695 -21.76112 -20.66416 -19.27438 -18.93334 -18.54493 -17.70602 -17.46685 -16.86991 -16.40475 -16.26507 -15.77560 -15.50644 -15.43178 -15.19374 -15.04725 -14.74506 -14.52781 -14.33641 -14.15911 -13.98199 -13.92953 -13.51919 -13.35274 -13.28796 -12.95360 -12.85730 -12.71532 -12.62342 -12.59429 -12.47488 -12.31257 -12.14023 -12.11858 -11.72279 -11.53639 -11.38632 -11.02540 -10.82699 -10.28172 -9.85110 -9.53003 -9.22379 -9.05070 -7.94102 -5.23956 -0.83398 -0.35861 0.91694 1.36917 1.48195 1.49129 1.57735 1.86767 2.17900 2.56186 2.91905 3.06241 3.36426 3.43936 3.58174 3.71758 3.74555 3.82799 3.87749 3.93573 4.08464 4.19239 4.20232 4.32526 4.34849 4.39013 4.49053 4.50622 4.62585 4.75846 4.76394 4.84622 4.87732 4.92047 4.97950 5.04092 5.08850 5.13963 5.20336 5.24837 5.32796 5.35018 5.37983 5.45680 5.52310 5.55842 5.57448 5.86311 6.26054 6.43800 6.63747 7.07067 7.33500 8.04658 8.29879 9.29049 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008450 B = 0.004639 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3312.921643 B = 6033.929340 C = 9068.182565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.059 4.059 4 C -0.093 4.093 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.098 4.098 8 C -0.114 4.114 9 C 0.088 3.912 10 N -0.456 5.456 11 C 0.086 3.914 12 C 0.573 3.427 13 O -0.541 6.541 14 N -0.592 5.592 15 C 0.116 3.884 16 C 0.160 3.840 17 H 0.069 0.931 18 N -0.722 5.722 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.069 4.069 22 N -0.968 5.968 23 Si 0.969 3.031 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.269 1.269 27 C -0.125 4.125 28 C 0.134 3.866 29 H 0.092 0.908 30 C -0.149 4.149 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.187 0.813 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 18.519 -4.986 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.084 4.084 4 C -0.095 4.095 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.133 4.133 9 C -0.035 4.035 10 N -0.167 5.167 11 C -0.067 4.067 12 C 0.361 3.639 13 O -0.420 6.420 14 N -0.324 5.324 15 C -0.010 4.010 16 C 0.049 3.951 17 H 0.087 0.913 18 N -0.360 5.360 19 C -0.372 4.372 20 H 0.094 0.906 21 C -0.261 4.261 22 N -0.618 5.618 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.194 1.194 27 C -0.163 4.163 28 C 0.032 3.968 29 H 0.110 0.890 30 C -0.207 4.207 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.204 0.796 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.168 0.832 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.456 17.754 -5.063 21.727 hybrid contribution 1.105 0.087 0.287 1.145 sum -10.351 17.841 -4.776 21.172 Atomic orbital electron populations 1.20959 0.87665 1.03987 1.03437 1.20738 0.99332 0.91780 0.98727 1.21758 0.91915 0.99212 0.95564 1.19297 0.95187 0.94476 1.00580 1.21414 0.94225 0.97396 0.98707 1.21439 0.95022 0.98427 0.96946 1.21284 1.01675 0.91753 0.97110 1.21017 0.91370 1.00212 1.00684 1.19271 0.94729 0.88637 1.00910 1.68140 1.07039 1.31588 1.09898 1.21318 0.89883 0.94335 1.01116 1.17848 0.86273 0.82492 0.77283 1.90630 1.12862 1.86309 1.52241 1.48566 1.08958 1.05732 1.69150 1.22793 0.78491 0.99083 1.00618 1.21472 0.86489 0.91162 0.95958 0.91280 1.42460 1.02221 1.81670 1.09697 1.19600 0.85539 1.37892 0.94192 0.90577 1.25496 1.01224 1.02939 0.96449 1.69817 1.28540 1.55082 1.08377 0.85212 0.80013 0.76974 0.78016 1.21459 1.22287 1.19352 1.23085 0.93159 0.99313 1.00782 1.22104 0.93769 0.80375 1.00546 0.89023 1.22029 0.97499 1.03434 0.97702 0.90995 0.89244 0.90239 0.79584 0.81130 0.81495 0.83180 0.86709 0.92763 0.93185 0.79306 0.94044 0.88067 0.91684 0.94276 0.90745 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 8.68 71.24 0.62 -1.64 16 2 C -0.10 -2.70 5.89 -19.77 -0.12 -2.82 16 3 C -0.06 -1.21 9.50 22.48 0.21 -1.00 16 4 C -0.09 -2.23 5.75 -21.22 -0.12 -2.35 16 5 C -0.10 -1.59 9.77 22.31 0.22 -1.37 16 6 C -0.10 -1.56 9.95 22.07 0.22 -1.34 16 7 C -0.10 -2.11 9.94 22.04 0.22 -1.89 16 8 C -0.11 -3.44 9.99 22.38 0.22 -3.22 16 9 C 0.09 2.81 6.61 40.49 0.27 3.08 16 10 N -0.46 -16.61 6.80 -177.77 -1.21 -17.82 16 11 C 0.09 2.91 6.71 42.29 0.28 3.20 16 12 C 0.57 20.21 7.56 86.91 0.66 20.87 16 13 O -0.54 -18.72 10.94 -3.71 -0.04 -18.76 16 14 N -0.59 -20.93 3.24 -790.91 -2.57 -23.50 16 15 C 0.12 4.62 5.16 86.73 0.45 5.07 16 16 C 0.16 6.40 3.61 46.18 0.17 6.57 16 17 H 0.07 2.72 8.09 -2.39 -0.02 2.70 16 18 N -0.72 -36.29 5.16 -317.33 -1.64 -37.93 16 19 C -0.24 -13.19 9.96 84.03 0.84 -12.35 16 20 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 23 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C -0.12 -4.08 6.13 32.00 0.20 -3.88 16 28 C 0.13 4.05 3.77 45.47 0.17 4.23 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 C -0.15 -4.11 8.59 71.98 0.62 -3.49 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.30 8.04 -2.38 -0.02 1.28 16 33 H 0.08 2.08 5.81 -2.39 -0.01 2.06 16 34 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 39 H 0.05 2.50 7.14 -2.39 -0.02 2.48 16 40 H 0.05 2.06 7.69 -2.39 -0.02 2.04 16 41 H 0.37 20.38 7.76 -92.71 -0.72 19.66 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 44 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 45 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.07 2.18 6.09 -2.38 -0.01 2.16 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.97 378.82 2.72 -68.25 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.27 Total: 36.45 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: 5.59 Total: 4.22 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -5.13 Total: -137.86 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.04 Total: -18.76 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.97 2.72 -68.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.890 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds