Wall clock time and date at job start Tue Mar 31 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36542 * 120.09029 * 2 1 4 4 C 1.40716 * 118.24302 * 179.97438 * 3 2 1 5 5 C 1.40428 * 121.28453 * 179.97438 * 4 3 2 6 6 C 1.36125 * 119.65206 * 179.97438 * 5 4 3 7 7 C 1.39445 * 120.91656 * 0.04271 * 6 5 4 8 8 C 1.35989 * 121.08832 * 0.02562 * 7 6 5 9 9 C 1.40832 * 119.73654 * 359.97237 * 8 7 6 10 10 N 1.33244 * 120.98874 * 180.02562 * 9 8 7 11 11 C 1.31897 * 121.30013 * 179.97438 * 10 9 8 12 12 C 1.48273 * 119.24447 * 179.97438 * 11 10 9 13 13 O 1.21497 * 120.00151 * 174.21646 * 12 11 10 14 14 N 1.34783 * 119.99641 * 354.21239 * 12 11 10 15 15 C 1.47425 * 125.64842 * 359.69034 * 14 12 11 16 16 C 1.55127 * 104.72356 * 155.81643 * 15 14 12 17 17 H 1.08997 * 111.22573 * 279.18320 * 16 15 14 18 18 N 1.46495 * 110.90990 * 155.27539 * 16 15 14 19 19 C 1.36937 * 120.00067 * 92.97632 * 18 16 15 20 20 H 1.08006 * 119.99603 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00323 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00319 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47290 * 59.99712 * 23 21 19 25 25 H 1.48500 * 109.47134 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46866 * 299.99862 * 23 21 19 27 27 C 1.55157 * 101.48314 * 37.29475 * 16 15 14 28 28 C 1.47014 * 125.64906 * 180.02562 * 14 12 11 29 29 H 1.08997 * 109.88749 * 61.44524 * 28 14 12 30 30 C 1.53003 * 109.87870 * 300.43873 * 28 14 12 31 31 H 1.09003 * 109.46905 * 263.19048 * 1 2 3 32 32 H 1.08999 * 109.47156 * 23.18346 * 1 2 3 33 33 H 1.08996 * 109.46853 * 143.19192 * 1 2 3 34 34 H 1.08004 * 120.87482 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.17418 * 0.02562 * 5 4 3 36 36 H 1.07994 * 119.54413 * 180.02562 * 6 5 4 37 37 H 1.08000 * 119.45395 * 179.97438 * 7 6 5 38 38 H 1.08005 * 120.13176 * 180.02562 * 8 7 6 39 39 H 1.09002 * 110.36659 * 274.74927 * 15 14 12 40 40 H 1.09001 * 110.36524 * 37.07175 * 15 14 12 41 41 H 0.97001 * 119.99934 * 272.98384 * 18 16 15 42 42 H 0.97001 * 119.99838 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.72130 * 205.97076 * 27 16 15 44 44 H 1.09010 * 110.71844 * 82.69775 * 27 16 15 45 45 H 1.09004 * 109.47198 * 61.45666 * 30 28 14 46 46 H 1.09005 * 109.46949 * 181.45319 * 30 28 14 47 47 H 1.08994 * 109.47275 * 301.45209 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 0.0006 5 6 4.3656 2.3120 0.0001 6 6 5.7243 2.2294 0.0011 7 6 6.3668 0.9918 0.0019 8 6 5.6568 -0.1680 0.0010 9 6 4.2491 -0.1253 -0.0001 10 7 3.5288 -1.2462 -0.0005 11 6 2.2102 -1.2134 -0.0010 12 6 1.4538 -2.4887 -0.0020 13 8 0.2435 -2.4773 0.1036 14 7 2.1090 -3.6606 -0.1200 15 6 3.5679 -3.8189 -0.2614 16 6 3.8614 -5.2506 0.2587 17 1 3.9073 -5.2733 1.3475 18 7 5.0967 -5.7768 -0.3273 19 6 6.2873 -5.6208 0.3309 20 1 6.3156 -5.1101 1.2822 21 6 7.4579 -6.1188 -0.2245 22 7 7.4235 -6.7407 -1.3841 23 14 9.0820 -5.9066 0.6736 24 1 9.0042 -6.5690 2.0004 25 1 10.1727 -6.5228 -0.1237 26 1 9.3600 -4.4596 0.8584 27 6 2.6237 -6.0281 -0.2619 28 6 1.4866 -4.9924 -0.1361 29 1 0.8104 -5.0754 -0.9869 30 6 0.7156 -5.2221 1.1653 31 1 -0.3633 -0.1219 1.0205 32 1 -0.3633 0.9447 -0.4046 33 1 -0.3633 -0.8228 -0.6157 34 1 1.6674 2.1257 0.0004 35 1 3.8804 3.2769 -0.0004 36 1 6.3129 3.1349 0.0012 37 1 7.4462 0.9538 0.0023 38 1 6.1704 -1.1181 0.0020 39 1 3.8600 -3.7254 -1.3074 40 1 4.0903 -3.0804 0.3467 41 1 5.0712 -6.2356 -1.1815 42 1 8.2414 -7.0891 -1.7720 43 1 2.4239 -6.8983 0.3633 44 1 2.7630 -6.3230 -1.3021 45 1 -0.0773 -4.4792 1.2539 46 1 0.2785 -6.2206 1.1573 47 1 1.3959 -5.1300 2.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989222324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:28 Heat of formation + Delta-G solvation = 47.936742 kcal Electronic energy + Delta-G solvation = -29643.608304 eV Core-core repulsion = 25791.919225 eV Total energy + Delta-G solvation = -3851.689078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21274 -39.72413 -37.79580 -36.79604 -34.42419 -34.00897 -31.85511 -31.65597 -31.21445 -30.06199 -28.29330 -27.11373 -25.59008 -25.16868 -23.75355 -22.71296 -22.14841 -21.97712 -20.20570 -19.27821 -17.97018 -17.59220 -17.28444 -16.67789 -15.85797 -15.52907 -15.18325 -14.87012 -14.62096 -14.37449 -14.17618 -13.89007 -13.46147 -13.38034 -13.32124 -13.08323 -13.06199 -12.89968 -12.84580 -12.42147 -12.12958 -11.90010 -11.70521 -11.68891 -11.65982 -11.58633 -11.13635 -10.94782 -10.74425 -10.60870 -10.46471 -10.23933 -9.98862 -9.73268 -9.66969 -9.30988 -8.84737 -8.82217 -8.33571 -8.20594 -7.02602 -5.81136 -3.10919 0.13152 0.58747 1.85234 2.41036 3.11850 3.27112 3.41195 3.46318 3.46973 4.02144 4.06378 4.40593 4.52622 4.59042 4.62231 4.72204 4.91372 4.96854 5.08483 5.18033 5.23410 5.27100 5.30057 5.48393 5.53060 5.64268 5.66076 5.72452 5.75907 5.80839 5.88078 5.91950 5.97129 5.98305 6.16175 6.19092 6.25488 6.29804 6.32627 6.33992 6.41672 6.44729 6.56844 6.68208 6.69650 6.94109 6.95886 7.64786 7.66816 7.83693 8.32903 8.37318 9.48279 10.03119 10.38356 11.41043 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008551 B = 0.004577 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.599761 B = 6115.988428 C = 9097.368652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.076 4.076 4 C -0.081 4.081 5 C -0.110 4.110 6 C -0.104 4.104 7 C -0.112 4.112 8 C -0.074 4.074 9 C 0.115 3.885 10 N -0.420 5.420 11 C 0.117 3.883 12 C 0.577 3.423 13 O -0.540 6.540 14 N -0.585 5.585 15 C 0.071 3.929 16 C 0.171 3.829 17 H 0.066 0.934 18 N -0.711 5.711 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.009 4.009 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.139 4.139 28 C 0.137 3.863 29 H 0.071 0.929 30 C -0.161 4.161 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 16.536 2.474 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.102 4.102 4 C -0.084 4.084 5 C -0.129 4.129 6 C -0.122 4.122 7 C -0.132 4.132 8 C -0.092 4.092 9 C -0.009 4.009 10 N -0.130 5.130 11 C -0.037 4.037 12 C 0.364 3.636 13 O -0.419 6.419 14 N -0.316 5.316 15 C -0.054 4.054 16 C 0.058 3.942 17 H 0.084 0.916 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.178 4.178 28 C 0.034 3.966 29 H 0.089 0.911 30 C -0.219 4.219 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.392 15.796 2.637 19.090 hybrid contribution 0.757 0.844 0.071 1.135 sum -9.635 16.639 2.707 19.417 Atomic orbital electron populations 1.21051 0.88943 1.03099 1.03923 1.20510 0.98424 0.92046 0.97963 1.21296 0.92430 0.98274 0.98176 1.18964 0.94160 0.94583 1.00643 1.20931 0.94091 0.96921 1.00968 1.20994 0.94619 0.98059 0.98513 1.20950 1.00706 0.91920 0.99619 1.21085 0.91133 1.00060 0.96972 1.18994 0.94393 0.87726 0.99749 1.68279 1.06318 1.29438 1.08988 1.21221 0.89719 0.93665 0.99055 1.17540 0.86090 0.82116 0.77836 1.90671 1.12930 1.86251 1.52051 1.48516 1.10131 1.04579 1.68351 1.23938 0.77271 1.01843 1.02368 1.21409 0.86144 0.89914 0.96710 0.91648 1.42289 1.01617 1.66724 1.24422 1.19206 0.85019 1.30935 1.02251 0.91081 1.24732 0.97817 1.00833 0.97130 1.69652 1.27373 1.42831 1.18030 0.86289 0.83614 0.77656 0.78742 1.21229 1.21704 1.21185 1.23048 0.94979 0.97293 1.02517 1.21571 0.95082 0.81794 0.98177 0.91095 1.22132 1.00693 1.01903 0.97127 0.90608 0.92536 0.88153 0.84027 0.85324 0.85543 0.85030 0.83682 0.91737 0.87770 0.77941 0.93381 0.90213 0.90655 0.91424 0.91897 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 8.68 36.01 0.31 -0.99 16 2 C -0.09 -1.15 5.89 -104.48 -0.62 -1.77 16 3 C -0.08 -0.86 9.50 -39.26 -0.37 -1.23 16 4 C -0.08 -1.02 5.75 -106.72 -0.61 -1.63 16 5 C -0.11 -1.08 9.77 -39.52 -0.39 -1.47 16 6 C -0.10 -0.97 9.96 -39.89 -0.40 -1.36 16 7 C -0.11 -1.22 9.94 -39.94 -0.40 -1.61 16 8 C -0.07 -1.02 9.99 -39.41 -0.39 -1.41 16 9 C 0.11 1.71 6.61 -84.85 -0.56 1.15 16 10 N -0.42 -6.96 6.49 -7.54 -0.05 -7.01 16 11 C 0.12 1.87 6.71 -82.96 -0.56 1.31 16 12 C 0.58 9.77 7.56 -12.13 -0.09 9.68 16 13 O -0.54 -9.32 12.11 5.37 0.07 -9.25 16 14 N -0.58 -9.91 3.08 -163.83 -0.50 -10.41 16 15 C 0.07 1.32 5.75 -2.41 -0.01 1.31 16 16 C 0.17 3.33 3.73 -65.67 -0.24 3.08 16 17 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 18 N -0.71 -17.10 5.24 -51.24 -0.27 -17.37 16 19 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 20 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 23 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 C -0.14 -2.26 6.14 -24.90 -0.15 -2.42 16 28 C 0.14 2.10 3.49 -66.96 -0.23 1.87 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 C -0.16 -2.23 9.06 37.16 0.34 -1.90 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 33 H 0.10 1.34 5.79 -51.93 -0.30 1.04 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.15 2.11 8.06 -52.48 -0.42 1.69 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.10 2.03 5.69 -51.93 -0.30 1.73 16 41 H 0.39 9.88 7.76 -40.82 -0.32 9.57 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.08 1.20 7.83 -51.93 -0.41 0.80 16 44 H 0.07 1.24 8.00 -51.92 -0.42 0.82 16 45 H 0.07 1.00 6.74 -51.93 -0.35 0.65 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 379.93 15.07 5.73 5.73 Total: -1.00 -30.53 379.93 -10.65 -41.18 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.70 Total: 11.33 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -4.63 Total: -4.35 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.10 Total: -61.33 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.53 -10.65 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.119 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds