Wall clock time and date at job start Tue Mar 31 2020 22:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36542 * 120.09029 * 2 1 4 4 C 1.40716 * 118.24302 * 179.97438 * 3 2 1 5 5 C 1.40428 * 121.28453 * 179.97438 * 4 3 2 6 6 C 1.36125 * 119.65206 * 179.97438 * 5 4 3 7 7 C 1.39445 * 120.91656 * 0.04271 * 6 5 4 8 8 C 1.35989 * 121.08832 * 0.02562 * 7 6 5 9 9 C 1.40832 * 119.73654 * 359.97237 * 8 7 6 10 10 N 1.33244 * 120.98874 * 180.02562 * 9 8 7 11 11 C 1.31897 * 121.30013 * 179.97438 * 10 9 8 12 12 C 1.48273 * 119.24447 * 179.97438 * 11 10 9 13 13 O 1.21497 * 120.00151 * 174.21646 * 12 11 10 14 14 N 1.34783 * 119.99641 * 354.21239 * 12 11 10 15 15 C 1.47425 * 125.64842 * 359.69034 * 14 12 11 16 16 C 1.55127 * 104.72356 * 155.81643 * 15 14 12 17 17 H 1.08997 * 111.22573 * 279.18320 * 16 15 14 18 18 N 1.46495 * 110.90990 * 155.27539 * 16 15 14 19 19 C 1.36937 * 120.00067 * 92.97632 * 18 16 15 20 20 H 1.08006 * 119.99603 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00323 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00319 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47290 * 59.99712 * 23 21 19 25 25 H 1.48500 * 109.47134 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46866 * 299.99862 * 23 21 19 27 27 C 1.55157 * 101.48314 * 37.29475 * 16 15 14 28 28 C 1.47014 * 125.64906 * 180.02562 * 14 12 11 29 29 H 1.08997 * 109.88749 * 61.44524 * 28 14 12 30 30 C 1.53003 * 109.87870 * 300.43873 * 28 14 12 31 31 H 1.09003 * 109.46905 * 263.19048 * 1 2 3 32 32 H 1.08999 * 109.47156 * 23.18346 * 1 2 3 33 33 H 1.08996 * 109.46853 * 143.19192 * 1 2 3 34 34 H 1.08004 * 120.87482 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.17418 * 0.02562 * 5 4 3 36 36 H 1.07994 * 119.54413 * 180.02562 * 6 5 4 37 37 H 1.08000 * 119.45395 * 179.97438 * 7 6 5 38 38 H 1.08005 * 120.13176 * 180.02562 * 8 7 6 39 39 H 1.09002 * 110.36659 * 274.74927 * 15 14 12 40 40 H 1.09001 * 110.36524 * 37.07175 * 15 14 12 41 41 H 0.97001 * 119.99934 * 272.98384 * 18 16 15 42 42 H 0.97001 * 119.99838 * 180.02562 * 22 21 19 43 43 H 1.09000 * 110.72130 * 205.97076 * 27 16 15 44 44 H 1.09010 * 110.71844 * 82.69775 * 27 16 15 45 45 H 1.09004 * 109.47198 * 61.45666 * 30 28 14 46 46 H 1.09005 * 109.46949 * 181.45319 * 30 28 14 47 47 H 1.08994 * 109.47275 * 301.45209 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 0.0006 5 6 4.3656 2.3120 0.0001 6 6 5.7243 2.2294 0.0011 7 6 6.3668 0.9918 0.0019 8 6 5.6568 -0.1680 0.0010 9 6 4.2491 -0.1253 -0.0001 10 7 3.5288 -1.2462 -0.0005 11 6 2.2102 -1.2134 -0.0010 12 6 1.4538 -2.4887 -0.0020 13 8 0.2435 -2.4773 0.1036 14 7 2.1090 -3.6606 -0.1200 15 6 3.5679 -3.8189 -0.2614 16 6 3.8614 -5.2506 0.2587 17 1 3.9073 -5.2733 1.3475 18 7 5.0967 -5.7768 -0.3273 19 6 6.2873 -5.6208 0.3309 20 1 6.3156 -5.1101 1.2822 21 6 7.4579 -6.1188 -0.2245 22 7 7.4235 -6.7407 -1.3841 23 14 9.0820 -5.9066 0.6736 24 1 9.0042 -6.5690 2.0004 25 1 10.1727 -6.5228 -0.1237 26 1 9.3600 -4.4596 0.8584 27 6 2.6237 -6.0281 -0.2619 28 6 1.4866 -4.9924 -0.1361 29 1 0.8104 -5.0754 -0.9869 30 6 0.7156 -5.2221 1.1653 31 1 -0.3633 -0.1219 1.0205 32 1 -0.3633 0.9447 -0.4046 33 1 -0.3633 -0.8228 -0.6157 34 1 1.6674 2.1257 0.0004 35 1 3.8804 3.2769 -0.0004 36 1 6.3129 3.1349 0.0012 37 1 7.4462 0.9538 0.0023 38 1 6.1704 -1.1181 0.0020 39 1 3.8600 -3.7254 -1.3074 40 1 4.0903 -3.0804 0.3467 41 1 5.0712 -6.2356 -1.1815 42 1 8.2414 -7.0891 -1.7720 43 1 2.4239 -6.8983 0.3633 44 1 2.7630 -6.3230 -1.3021 45 1 -0.0773 -4.4792 1.2539 46 1 0.2785 -6.2206 1.1573 47 1 1.3959 -5.1300 2.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989222324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:27 Heat of formation + Delta-G solvation = 31.162327 kcal Electronic energy + Delta-G solvation = -29644.335697 eV Core-core repulsion = 25791.919225 eV Total energy + Delta-G solvation = -3852.416471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26415 -40.96674 -39.07917 -37.87722 -36.05300 -35.21956 -33.29129 -32.94850 -32.52181 -31.05995 -29.99249 -28.03917 -26.83492 -26.42094 -25.64924 -23.71291 -23.27178 -23.04018 -21.73300 -20.54726 -19.32143 -18.92354 -18.77079 -17.71116 -17.13916 -16.89683 -16.48676 -16.23698 -15.85412 -15.52560 -15.27536 -15.13067 -15.02316 -14.71460 -14.53848 -14.41639 -14.23912 -14.03747 -13.93996 -13.71770 -13.32705 -13.19635 -12.98715 -12.92733 -12.74488 -12.66265 -12.61288 -12.48902 -12.27673 -12.10615 -12.05889 -11.72689 -11.47205 -11.38432 -11.01779 -10.90916 -10.29371 -9.85529 -9.53996 -9.22521 -9.02852 -7.93909 -5.23661 -0.84500 -0.35867 0.91144 1.36348 1.48420 1.50731 1.56929 1.84905 2.17338 2.56525 2.91490 3.05652 3.36842 3.42509 3.57681 3.70190 3.73266 3.85629 3.89022 3.98483 4.07339 4.11821 4.20408 4.35107 4.36326 4.39531 4.46489 4.50891 4.61532 4.72398 4.75223 4.86176 4.88016 4.94596 5.00395 5.01214 5.06976 5.09664 5.20466 5.25354 5.30154 5.37847 5.40390 5.46428 5.48087 5.54033 5.57802 5.86971 6.26560 6.42711 6.61268 7.04506 7.34073 8.04812 8.30735 9.28906 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008551 B = 0.004577 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3273.599761 B = 6115.988428 C = 9097.368652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.103 4.103 3 C -0.057 4.057 4 C -0.093 4.093 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.097 4.097 8 C -0.114 4.114 9 C 0.089 3.911 10 N -0.455 5.455 11 C 0.089 3.911 12 C 0.573 3.427 13 O -0.545 6.545 14 N -0.590 5.590 15 C 0.093 3.907 16 C 0.166 3.834 17 H 0.061 0.939 18 N -0.721 5.721 19 C -0.242 4.242 20 H 0.074 0.926 21 C -0.067 4.067 22 N -0.967 5.967 23 Si 0.968 3.032 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.277 1.277 27 C -0.126 4.126 28 C 0.136 3.864 29 H 0.079 0.921 30 C -0.151 4.151 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.187 0.813 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 19.897 3.342 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.082 4.082 4 C -0.095 4.095 5 C -0.117 4.117 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.133 4.133 9 C -0.035 4.035 10 N -0.166 5.166 11 C -0.063 4.063 12 C 0.361 3.639 13 O -0.425 6.425 14 N -0.322 5.322 15 C -0.032 4.032 16 C 0.055 3.945 17 H 0.079 0.921 18 N -0.360 5.360 19 C -0.374 4.374 20 H 0.092 0.908 21 C -0.259 4.259 22 N -0.617 5.617 23 Si 0.797 3.203 24 H -0.205 1.205 25 H -0.222 1.222 26 H -0.203 1.203 27 C -0.165 4.165 28 C 0.033 3.967 29 H 0.097 0.903 30 C -0.209 4.209 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.204 0.796 35 H 0.188 0.812 36 H 0.185 0.815 37 H 0.169 0.831 38 H 0.136 0.864 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.107 0.893 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.045 19.174 3.537 22.409 hybrid contribution 0.943 -0.045 -0.196 0.965 sum -10.102 19.129 3.341 21.889 Atomic orbital electron populations 1.20962 0.87766 1.03908 1.03497 1.20716 0.99270 0.91782 0.98861 1.21764 0.91953 0.99177 0.95306 1.19283 0.95133 0.94503 1.00603 1.21413 0.94241 0.97393 0.98684 1.21443 0.95006 0.98480 0.96921 1.21293 1.01714 0.91740 0.96978 1.21030 0.91269 1.00315 1.00706 1.19300 0.94788 0.88637 1.00758 1.68115 1.06928 1.31166 1.10405 1.21262 0.89897 0.94154 1.00986 1.17864 0.86225 0.82511 0.77301 1.90659 1.13043 1.86506 1.52251 1.48529 1.09186 1.05470 1.68978 1.23422 0.78630 1.00718 1.00473 1.21520 0.85900 0.90844 0.96259 0.92117 1.42384 1.02482 1.67037 1.24069 1.19535 0.86095 1.29616 1.02149 0.90846 1.25481 1.00999 1.01395 0.98064 1.69805 1.27724 1.44506 1.19648 0.85294 0.79527 0.77817 0.77637 1.20467 1.22170 1.20323 1.22946 0.93371 0.97725 1.02461 1.21678 0.94797 0.80750 0.99482 0.90316 1.22058 0.99970 1.03134 0.95719 0.90808 0.89235 0.90500 0.79568 0.81181 0.81545 0.83118 0.86427 0.94107 0.88879 0.79100 0.93976 0.88514 0.90932 0.92255 0.89313 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 8.68 71.24 0.62 -1.65 16 2 C -0.10 -2.66 5.89 -19.77 -0.12 -2.77 16 3 C -0.06 -1.12 9.50 22.48 0.21 -0.91 16 4 C -0.09 -2.14 5.75 -21.22 -0.12 -2.26 16 5 C -0.10 -1.51 9.77 22.31 0.22 -1.29 16 6 C -0.10 -1.48 9.96 22.07 0.22 -1.26 16 7 C -0.10 -1.98 9.94 22.04 0.22 -1.76 16 8 C -0.11 -3.29 9.99 22.38 0.22 -3.07 16 9 C 0.09 2.72 6.61 40.48 0.27 2.99 16 10 N -0.46 -16.05 6.49 -177.78 -1.15 -17.21 16 11 C 0.09 2.96 6.71 42.29 0.28 3.25 16 12 C 0.57 20.15 7.56 86.91 0.66 20.80 16 13 O -0.55 -19.18 12.11 -3.71 -0.04 -19.22 16 14 N -0.59 -20.88 3.08 -790.53 -2.43 -23.31 16 15 C 0.09 3.72 5.75 86.93 0.50 4.22 16 16 C 0.17 6.73 3.73 46.46 0.17 6.90 16 17 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16 18 N -0.72 -36.13 5.24 -316.03 -1.66 -37.79 16 19 C -0.24 -13.31 9.96 84.03 0.84 -12.47 16 20 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 22 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 23 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 C -0.13 -4.15 6.14 31.78 0.20 -3.96 16 28 C 0.14 4.20 3.49 45.34 0.16 4.35 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 C -0.15 -4.10 9.06 71.98 0.65 -3.45 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.30 8.04 -2.39 -0.02 1.28 16 33 H 0.08 2.04 5.79 -2.39 -0.01 2.03 16 34 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.12 3.86 8.06 -2.91 -0.02 3.84 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.09 3.94 5.69 -2.39 -0.01 3.93 16 41 H 0.38 20.15 7.76 -92.71 -0.72 19.43 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.10 2.85 7.83 -2.39 -0.02 2.83 16 44 H 0.07 2.44 8.00 -2.38 -0.02 2.42 16 45 H 0.06 1.73 6.74 -2.38 -0.02 1.71 16 46 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 47 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.29 379.93 2.96 -67.33 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: 0.27 Total: 36.39 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.67 Total: 4.35 kcal Atomic # 7 Polarization: -131.43 SS G_CDS: -4.96 Total: -136.39 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.04 Total: -19.22 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -70.29 2.96 -67.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.489 kcal (2) G-P(sol) polarization free energy of solvation -70.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds