Wall clock time and date at job start Tue Mar 31 2020 22:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39312 * 119.11524 * 2 1 4 4 C 1.36585 * 119.90512 * 180.02562 * 3 2 1 5 5 C 1.40892 * 118.15886 * 359.97438 * 4 3 2 6 6 C 1.40186 * 121.23003 * 180.25503 * 5 4 3 7 7 C 1.38546 * 119.40111 * 180.22331 * 6 5 4 8 8 C 1.47774 * 119.79983 * 179.79990 * 7 6 5 9 9 O 1.21561 * 120.00101 * 16.64315 * 8 7 6 10 10 N 1.34777 * 119.99596 * 196.64930 * 8 7 6 11 11 C 1.47425 * 125.64498 * 173.48250 * 10 8 7 12 12 C 1.54912 * 104.83258 * 155.90425 * 11 10 8 13 13 H 1.09001 * 111.00288 * 155.11831 * 12 11 10 14 14 N 1.46499 * 111.00391 * 278.93324 * 12 11 10 15 15 C 1.36932 * 120.00484 * 273.54517 * 14 12 11 16 16 H 1.08002 * 119.99544 * 0.02562 * 15 14 12 17 17 C 1.38806 * 120.00298 * 180.27514 * 15 14 12 18 18 N 1.31612 * 119.99908 * 359.72524 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 179.72356 * 17 15 14 20 20 H 1.48500 * 109.47040 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47300 * 119.99960 * 19 17 15 22 22 H 1.48504 * 109.47463 * 240.00096 * 19 17 15 23 23 C 1.55158 * 101.57914 * 37.00953 * 12 11 10 24 24 C 1.47017 * 125.65081 * 353.52127 * 10 8 7 25 25 H 1.09001 * 109.88078 * 300.44269 * 24 10 8 26 26 C 1.52999 * 109.88191 * 61.60804 * 24 10 8 27 27 C 1.40621 * 120.39626 * 359.51907 * 7 6 5 28 28 C 1.35701 * 120.92066 * 0.25771 * 27 7 6 29 29 C 1.40758 * 120.10816 * 359.97397 * 28 27 7 30 30 N 1.31124 * 119.11529 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47020 * 89.99830 * 1 2 3 32 32 H 1.09004 * 109.47310 * 209.99713 * 1 2 3 33 33 H 1.09001 * 109.47361 * 329.99753 * 1 2 3 34 34 H 1.07991 * 120.05227 * 0.02596 * 3 2 1 35 35 H 1.07994 * 120.92121 * 179.97438 * 4 3 2 36 36 H 1.08006 * 120.29518 * 359.97438 * 6 5 4 37 37 H 1.09000 * 110.37118 * 37.06593 * 11 10 8 38 38 H 1.08998 * 110.46001 * 274.78770 * 11 10 8 39 39 H 0.97008 * 119.99623 * 93.54505 * 14 12 11 40 40 H 0.97006 * 119.99785 * 179.97438 * 18 17 15 41 41 H 1.08993 * 110.72262 * 82.86177 * 23 12 11 42 42 H 1.08999 * 110.71686 * 206.13525 * 23 12 11 43 43 H 1.09000 * 109.47107 * 76.38348 * 26 24 10 44 44 H 1.09004 * 109.46997 * 196.38328 * 26 24 10 45 45 H 1.08997 * 109.46982 * 316.37879 * 26 24 10 46 46 H 1.08000 * 119.54314 * 180.23545 * 27 7 6 47 47 H 1.07996 * 119.94617 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0030 -0.0005 6 6 5.6332 -0.0528 0.0043 7 6 6.2648 -1.2859 -0.0006 8 6 7.7409 -1.3550 0.0000 9 8 8.3951 -0.3771 0.3060 10 7 8.3619 -2.5021 -0.3390 11 6 9.8159 -2.6733 -0.5119 12 6 10.0684 -4.1833 -0.2751 13 1 10.9756 -4.5119 -0.7822 14 7 10.1310 -4.4871 1.1567 15 6 11.3162 -4.3647 1.8314 16 1 12.2048 -4.0438 1.3081 17 6 11.3768 -4.6580 3.1868 18 7 10.2938 -5.0486 3.8246 19 14 12.9954 -4.4985 4.1055 20 1 14.0540 -4.0450 3.1681 21 1 12.8471 -3.5070 5.2011 22 1 13.3717 -5.8161 4.6779 23 6 8.8081 -4.8151 -0.9232 24 6 7.7015 -3.7898 -0.5983 25 1 7.1494 -4.1079 0.2861 26 6 6.7501 -3.6561 -1.7891 27 6 5.5096 -2.4721 0.0000 28 6 4.1531 -2.4351 -0.0001 29 6 3.4805 -1.1986 0.0000 30 7 2.1450 -1.1456 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6313 2.1444 0.0004 35 1 4.0926 2.1699 -0.0010 36 1 6.2147 0.8574 0.0077 37 1 10.3581 -2.0783 0.2231 38 1 10.1153 -2.3925 -1.5216 39 1 9.3327 -4.7749 1.6267 40 1 10.3362 -5.2539 4.7717 41 1 8.9373 -4.9146 -2.0008 42 1 8.5844 -5.7807 -0.4698 43 1 7.3257 -3.6462 -2.7146 44 1 6.0600 -4.4998 -1.7993 45 1 6.1868 -2.7271 -1.7015 46 1 6.0162 -3.4259 0.0000 47 1 3.5887 -3.3558 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989583669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:18 Heat of formation + Delta-G solvation = 70.656740 kcal Electronic energy + Delta-G solvation = -29185.403880 eV Core-core repulsion = 25334.700015 eV Total energy + Delta-G solvation = -3850.703865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28521 -40.12533 -37.65371 -37.07216 -34.43639 -33.66152 -32.57905 -31.37498 -31.26193 -30.10103 -29.03054 -27.72320 -25.80061 -24.08943 -23.92668 -23.33123 -22.21907 -21.99307 -20.10445 -19.40319 -18.65331 -17.40659 -17.16865 -16.55620 -15.86133 -15.68851 -15.12659 -15.03593 -14.77210 -14.64124 -14.25145 -14.02370 -13.76687 -13.56070 -13.36359 -13.22678 -13.08886 -13.02762 -12.75725 -12.50823 -12.38057 -12.26792 -11.94962 -11.67760 -11.45700 -11.35718 -10.96936 -10.92930 -10.78724 -10.69850 -10.55274 -10.34868 -10.01782 -9.74167 -9.69419 -9.65065 -9.04403 -8.71149 -8.44418 -8.20717 -7.03377 -5.82151 -3.11955 0.10902 0.54944 1.77690 2.38902 3.24348 3.35537 3.41907 3.48028 3.49965 3.92679 3.97767 4.34525 4.46639 4.50555 4.54760 4.58912 4.73605 4.85353 4.93296 4.96638 4.99717 5.15849 5.24629 5.26744 5.30871 5.39292 5.48623 5.53455 5.61329 5.64839 5.68118 5.70966 5.78132 5.85883 5.86276 5.91339 6.04801 6.15153 6.19696 6.20833 6.25737 6.33789 6.37417 6.53000 6.62429 6.68488 6.82143 7.66729 7.73270 7.85460 8.35312 8.43708 9.47488 10.01178 10.35520 11.40114 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.002677 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.704216 B =10455.724298 C =10780.638406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.162 3.838 3 C -0.183 4.183 4 C -0.042 4.042 5 C -0.123 4.123 6 C -0.029 4.029 7 C -0.127 4.127 8 C 0.570 3.430 9 O -0.540 6.540 10 N -0.591 5.591 11 C 0.078 3.922 12 C 0.168 3.832 13 H 0.073 0.927 14 N -0.711 5.711 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.929 5.929 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.136 4.136 24 C 0.119 3.881 25 H 0.087 0.913 26 C -0.184 4.184 27 C -0.088 4.088 28 C -0.117 4.117 29 C 0.152 3.848 30 N -0.480 5.480 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.169 0.831 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 7.815 -13.117 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.009 3.991 3 C -0.203 4.203 4 C -0.068 4.068 5 C -0.125 4.125 6 C -0.049 4.049 7 C -0.130 4.130 8 C 0.359 3.641 9 O -0.419 6.419 10 N -0.323 5.323 11 C -0.047 4.047 12 C 0.055 3.945 13 H 0.090 0.910 14 N -0.351 5.351 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.175 4.175 24 C 0.016 3.984 25 H 0.104 0.896 26 C -0.241 4.241 27 C -0.107 4.107 28 C -0.136 4.136 29 C 0.031 3.969 30 N -0.190 5.190 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.186 0.814 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.103 7.544 -12.854 23.449 hybrid contribution 1.008 0.902 0.825 1.584 sum -17.094 8.446 -12.029 22.544 Atomic orbital electron populations 1.20790 0.88647 1.03718 1.03265 1.21541 0.97163 0.88295 0.92058 1.21670 0.94949 0.99239 1.04429 1.21542 0.94490 0.97282 0.93469 1.18757 0.94294 0.94324 1.05127 1.21393 0.92257 0.97921 0.93352 1.19991 0.93578 0.94019 1.05431 1.17756 0.86667 0.82264 0.77374 1.90764 1.66855 1.35709 1.48545 1.48230 1.08774 1.08238 1.67009 1.23335 0.79461 1.01936 1.00009 1.21371 0.95347 0.90294 0.87461 0.90953 1.42311 1.10389 1.79743 1.02695 1.19256 0.88216 1.38495 0.91568 0.90904 1.24751 0.97270 1.01831 0.96724 1.69663 1.26912 1.51747 1.09378 0.86117 0.82976 0.77181 0.79888 1.20452 1.21840 1.21830 1.23076 0.95121 0.98224 1.01052 1.21944 0.94666 0.84573 0.97234 0.89565 1.22921 0.99790 1.03073 0.98306 1.22403 0.94302 1.00353 0.93683 1.20638 0.93640 0.96440 1.02847 1.18988 0.88959 0.92995 0.95989 1.67904 1.08420 1.28663 1.14011 0.90120 0.90221 0.90507 0.84523 0.84118 0.84009 0.89731 0.92743 0.78146 0.93475 0.90363 0.89489 0.91871 0.91041 0.90646 0.81445 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.14 36.00 0.37 -0.33 16 2 C 0.16 1.64 6.78 -82.50 -0.56 1.08 16 3 C -0.18 -1.61 9.64 -39.78 -0.38 -1.99 16 4 C -0.04 -0.42 9.89 -39.17 -0.39 -0.81 16 5 C -0.12 -1.57 5.74 -106.82 -0.61 -2.19 16 6 C -0.03 -0.41 9.34 -38.74 -0.36 -0.77 16 7 C -0.13 -1.94 5.05 -104.99 -0.53 -2.47 16 8 C 0.57 10.52 7.61 -12.36 -0.09 10.43 16 9 O -0.54 -11.81 16.66 5.31 0.09 -11.72 16 10 N -0.59 -10.13 3.06 -164.15 -0.50 -10.64 16 11 C 0.08 1.42 6.63 -2.53 -0.02 1.40 16 12 C 0.17 3.05 3.69 -65.78 -0.24 2.81 16 13 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 14 N -0.71 -16.91 5.27 -51.35 -0.27 -17.18 16 15 C -0.24 -6.60 9.98 -15.06 -0.15 -6.75 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.26 5.50 -17.44 -0.10 -0.36 16 18 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.14 -1.89 6.04 -24.89 -0.15 -2.04 16 24 C 0.12 1.65 2.73 -66.95 -0.18 1.46 16 25 H 0.09 1.23 6.19 -51.93 -0.32 0.91 16 26 C -0.18 -1.98 7.77 37.16 0.29 -1.69 16 27 C -0.09 -1.17 6.10 -39.59 -0.24 -1.41 16 28 C -0.12 -1.47 9.95 -39.54 -0.39 -1.87 16 29 C 0.15 2.05 6.61 -84.78 -0.56 1.48 16 30 N -0.48 -6.13 10.23 -7.17 -0.07 -6.21 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.87 7.71 -52.48 -0.40 1.47 16 37 H 0.08 1.86 7.98 -51.93 -0.41 1.44 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.38 9.77 7.82 -40.82 -0.32 9.45 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 0.88 7.57 -51.93 -0.39 0.49 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 0.65 7.70 -51.93 -0.40 0.25 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.88 4.25 -51.93 -0.22 0.66 16 46 H 0.17 2.07 2.53 -52.49 -0.13 1.93 16 47 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -34.08 377.31 -10.06 -44.14 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.38 Total: 9.58 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -4.31 Total: -4.00 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.12 Total: -61.05 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.08 -10.06 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989583669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.798 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds