Wall clock time and date at job start Tue Mar 31 2020 22:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39312 * 119.11524 * 2 1 4 4 C 1.36585 * 119.90512 * 180.02562 * 3 2 1 5 5 C 1.40892 * 118.15886 * 359.97438 * 4 3 2 6 6 C 1.40186 * 121.23003 * 180.25503 * 5 4 3 7 7 C 1.38546 * 119.40111 * 180.22331 * 6 5 4 8 8 C 1.47774 * 119.79983 * 179.79990 * 7 6 5 9 9 O 1.21561 * 120.00101 * 16.64315 * 8 7 6 10 10 N 1.34777 * 119.99596 * 196.64930 * 8 7 6 11 11 C 1.47425 * 125.64498 * 173.48250 * 10 8 7 12 12 C 1.54912 * 104.83258 * 155.90425 * 11 10 8 13 13 H 1.09001 * 111.00288 * 155.11831 * 12 11 10 14 14 N 1.46499 * 111.00391 * 278.93324 * 12 11 10 15 15 C 1.36932 * 120.00484 * 273.54517 * 14 12 11 16 16 H 1.08002 * 119.99544 * 0.02562 * 15 14 12 17 17 C 1.38806 * 120.00298 * 180.27514 * 15 14 12 18 18 N 1.31612 * 119.99908 * 359.72524 * 17 15 14 19 19 Si 1.86798 * 119.99990 * 179.72356 * 17 15 14 20 20 H 1.48500 * 109.47040 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47300 * 119.99960 * 19 17 15 22 22 H 1.48504 * 109.47463 * 240.00096 * 19 17 15 23 23 C 1.55158 * 101.57914 * 37.00953 * 12 11 10 24 24 C 1.47017 * 125.65081 * 353.52127 * 10 8 7 25 25 H 1.09001 * 109.88078 * 300.44269 * 24 10 8 26 26 C 1.52999 * 109.88191 * 61.60804 * 24 10 8 27 27 C 1.40621 * 120.39626 * 359.51907 * 7 6 5 28 28 C 1.35701 * 120.92066 * 0.25771 * 27 7 6 29 29 C 1.40758 * 120.10816 * 359.97397 * 28 27 7 30 30 N 1.31124 * 119.11529 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47020 * 89.99830 * 1 2 3 32 32 H 1.09004 * 109.47310 * 209.99713 * 1 2 3 33 33 H 1.09001 * 109.47361 * 329.99753 * 1 2 3 34 34 H 1.07991 * 120.05227 * 0.02596 * 3 2 1 35 35 H 1.07994 * 120.92121 * 179.97438 * 4 3 2 36 36 H 1.08006 * 120.29518 * 359.97438 * 6 5 4 37 37 H 1.09000 * 110.37118 * 37.06593 * 11 10 8 38 38 H 1.08998 * 110.46001 * 274.78770 * 11 10 8 39 39 H 0.97008 * 119.99623 * 93.54505 * 14 12 11 40 40 H 0.97006 * 119.99785 * 179.97438 * 18 17 15 41 41 H 1.08993 * 110.72262 * 82.86177 * 23 12 11 42 42 H 1.08999 * 110.71686 * 206.13525 * 23 12 11 43 43 H 1.09000 * 109.47107 * 76.38348 * 26 24 10 44 44 H 1.09004 * 109.46997 * 196.38328 * 26 24 10 45 45 H 1.08997 * 109.46982 * 316.37879 * 26 24 10 46 46 H 1.08000 * 119.54314 * 180.23545 * 27 7 6 47 47 H 1.07996 * 119.94617 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2359 -0.0005 5 6 4.2325 0.0030 -0.0005 6 6 5.6332 -0.0528 0.0043 7 6 6.2648 -1.2859 -0.0006 8 6 7.7409 -1.3550 0.0000 9 8 8.3951 -0.3771 0.3060 10 7 8.3619 -2.5021 -0.3390 11 6 9.8159 -2.6733 -0.5119 12 6 10.0684 -4.1833 -0.2751 13 1 10.9756 -4.5119 -0.7822 14 7 10.1310 -4.4871 1.1567 15 6 11.3162 -4.3647 1.8314 16 1 12.2048 -4.0438 1.3081 17 6 11.3768 -4.6580 3.1868 18 7 10.2938 -5.0486 3.8246 19 14 12.9954 -4.4985 4.1055 20 1 14.0540 -4.0450 3.1681 21 1 12.8471 -3.5070 5.2011 22 1 13.3717 -5.8161 4.6779 23 6 8.8081 -4.8151 -0.9232 24 6 7.7015 -3.7898 -0.5983 25 1 7.1494 -4.1079 0.2861 26 6 6.7501 -3.6561 -1.7891 27 6 5.5096 -2.4721 0.0000 28 6 4.1531 -2.4351 -0.0001 29 6 3.4805 -1.1986 0.0000 30 7 2.1450 -1.1456 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6313 2.1444 0.0004 35 1 4.0926 2.1699 -0.0010 36 1 6.2147 0.8574 0.0077 37 1 10.3581 -2.0783 0.2231 38 1 10.1153 -2.3925 -1.5216 39 1 9.3327 -4.7749 1.6267 40 1 10.3362 -5.2539 4.7717 41 1 8.9373 -4.9146 -2.0008 42 1 8.5844 -5.7807 -0.4698 43 1 7.3257 -3.6462 -2.7146 44 1 6.0600 -4.4998 -1.7993 45 1 6.1868 -2.7271 -1.7015 46 1 6.0162 -3.4259 0.0000 47 1 3.5887 -3.3558 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989583669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:17 Heat of formation + Delta-G solvation = 48.900931 kcal Electronic energy + Delta-G solvation = -29186.347283 eV Core-core repulsion = 25334.700015 eV Total energy + Delta-G solvation = -3851.647268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31340 -41.25004 -39.00256 -38.18315 -36.07929 -34.61149 -33.83904 -32.83863 -32.41800 -31.08954 -30.48901 -28.73114 -27.00577 -25.82184 -24.87225 -24.58213 -23.12382 -23.08085 -21.51874 -20.62225 -19.67257 -19.32009 -18.30557 -17.60983 -17.13015 -16.89225 -16.42738 -16.24717 -16.03282 -15.67341 -15.44785 -15.38842 -15.15876 -14.83694 -14.52106 -14.45624 -14.14877 -13.94431 -13.76856 -13.50763 -13.31099 -13.14938 -13.10618 -12.96616 -12.90879 -12.70248 -12.45616 -12.32095 -12.24258 -12.04402 -11.86512 -11.64314 -11.55779 -11.36027 -11.12373 -11.01859 -10.52533 -9.79966 -9.58015 -9.31090 -8.99404 -7.97138 -5.24788 -0.83147 -0.34959 0.83477 1.36834 1.44108 1.46160 1.54819 1.94412 2.17554 2.53606 3.00777 3.14367 3.29833 3.40347 3.52761 3.58139 3.65051 3.81203 3.86244 3.91016 3.98204 4.00432 4.04663 4.25057 4.32157 4.37812 4.47757 4.65650 4.69036 4.72911 4.75199 4.81865 4.84049 4.86251 4.93132 4.95531 4.99093 5.07425 5.16259 5.17808 5.19515 5.21269 5.25812 5.36363 5.43022 5.52049 5.52732 5.75278 6.25430 6.50699 6.89489 7.03875 7.32326 8.07046 8.28623 9.26138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.002677 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.704216 B =10455.724298 C =10780.638406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.159 3.841 3 C -0.173 4.173 4 C -0.048 4.048 5 C -0.140 4.140 6 C -0.028 4.028 7 C -0.150 4.150 8 C 0.561 3.439 9 O -0.591 6.591 10 N -0.593 5.593 11 C 0.083 3.917 12 C 0.158 3.842 13 H 0.083 0.917 14 N -0.723 5.723 15 C -0.237 4.237 16 H 0.078 0.922 17 C -0.075 4.075 18 N -0.967 5.967 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.302 1.302 22 H -0.290 1.290 23 C -0.120 4.120 24 C 0.116 3.884 25 H 0.080 0.920 26 C -0.173 4.173 27 C -0.087 4.087 28 C -0.117 4.117 29 C 0.137 3.863 30 N -0.508 5.508 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.140 0.860 37 H 0.037 0.963 38 H 0.082 0.918 39 H 0.373 0.627 40 H 0.249 0.751 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.175 0.825 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.492 8.225 -15.101 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.192 4.192 4 C -0.074 4.074 5 C -0.142 4.142 6 C -0.048 4.048 7 C -0.153 4.153 8 C 0.352 3.648 9 O -0.474 6.474 10 N -0.324 5.324 11 C -0.043 4.043 12 C 0.047 3.953 13 H 0.101 0.899 14 N -0.362 5.362 15 C -0.369 4.369 16 H 0.096 0.904 17 C -0.267 4.267 18 N -0.617 5.617 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.230 1.230 22 H -0.217 1.217 23 C -0.158 4.158 24 C 0.014 3.986 25 H 0.097 0.903 26 C -0.230 4.230 27 C -0.106 4.106 28 C -0.135 4.135 29 C 0.015 3.985 30 N -0.219 5.219 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.195 0.805 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.085 0.915 46 H 0.192 0.808 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.352 7.933 -14.909 26.447 hybrid contribution 1.545 0.901 1.356 2.245 sum -18.807 8.835 -13.553 24.808 Atomic orbital electron populations 1.20924 0.85987 1.04813 1.04515 1.22312 0.99009 0.88179 0.89806 1.22119 0.94551 1.00385 1.02192 1.21904 0.95365 0.97161 0.92953 1.18924 0.93665 0.95652 1.05936 1.21470 0.93068 0.97453 0.92774 1.19822 0.91623 0.95496 1.08358 1.18343 0.88057 0.81877 0.76494 1.90714 1.68174 1.37437 1.51040 1.48374 1.08483 1.09197 1.66341 1.23154 0.80166 1.00931 1.00040 1.21653 0.98184 0.90561 0.84869 0.89888 1.42475 1.08965 1.79809 1.04958 1.19642 0.89413 1.36000 0.91854 0.90446 1.25500 1.00173 1.03157 0.97886 1.69804 1.28740 1.54063 1.09131 0.85164 0.80039 0.76674 0.78458 1.18950 1.22955 1.21690 1.23051 0.92211 0.97743 1.02838 1.22168 0.95117 0.82805 0.98559 0.90274 1.22822 0.99461 1.03842 0.96893 1.22335 0.94462 0.99730 0.94058 1.20813 0.93345 0.97114 1.02273 1.19237 0.89697 0.93410 0.96130 1.67972 1.07959 1.30214 1.15716 0.88578 0.90775 0.87796 0.80544 0.81711 0.84241 0.94429 0.89965 0.79454 0.94191 0.86576 0.89193 0.90656 0.88255 0.91506 0.80841 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.14 71.23 0.72 -0.28 16 2 C 0.16 2.79 6.78 42.92 0.29 3.08 16 3 C -0.17 -2.46 9.64 22.14 0.21 -2.25 16 4 C -0.05 -0.87 9.89 22.53 0.22 -0.65 16 5 C -0.14 -3.50 5.74 -21.29 -0.12 -3.62 16 6 C -0.03 -0.80 9.34 22.82 0.21 -0.58 16 7 C -0.15 -4.73 5.05 -20.10 -0.10 -4.83 16 8 C 0.56 21.70 7.61 86.77 0.66 22.36 16 9 O -0.59 -27.55 16.66 -3.91 -0.07 -27.61 16 10 N -0.59 -20.75 3.06 -791.51 -2.43 -23.17 16 11 C 0.08 3.06 6.63 86.86 0.58 3.64 16 12 C 0.16 5.67 3.69 46.39 0.17 5.84 16 13 H 0.08 2.83 8.13 -2.39 -0.02 2.81 16 14 N -0.72 -35.03 5.27 -316.38 -1.67 -36.70 16 15 C -0.24 -13.02 9.98 84.03 0.84 -12.18 16 16 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 18 N -0.97 -59.53 13.06 21.65 0.28 -59.25 16 19 Si 0.97 47.06 29.55 68.60 2.03 49.08 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 22 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 23 C -0.12 -3.09 6.04 31.78 0.19 -2.89 16 24 C 0.12 3.08 2.73 45.34 0.12 3.21 16 25 H 0.08 2.25 6.19 -2.39 -0.01 2.23 16 26 C -0.17 -3.33 7.77 71.98 0.56 -2.77 16 27 C -0.09 -2.30 6.10 22.26 0.14 -2.16 16 28 C -0.12 -2.88 9.95 22.30 0.22 -2.66 16 29 C 0.14 3.57 6.61 40.35 0.27 3.84 16 30 N -0.51 -12.22 10.23 -176.58 -1.81 -14.02 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.10 0.45 8.07 -2.39 -0.02 0.43 16 34 H 0.18 1.06 8.06 -2.92 -0.02 1.04 16 35 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.14 3.90 7.71 -2.91 -0.02 3.87 16 37 H 0.04 1.74 7.98 -2.39 -0.02 1.72 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.37 19.53 7.82 -92.70 -0.72 18.80 16 40 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 41 H 0.12 2.15 7.57 -2.39 -0.02 2.14 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.07 1.29 7.70 -2.39 -0.02 1.27 16 44 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 1.48 4.25 -2.39 -0.01 1.47 16 46 H 0.18 4.22 2.53 -2.91 -0.01 4.21 16 47 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -78.59 377.31 2.28 -76.30 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.29 Total: 32.15 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.65 Total: 3.21 kcal Atomic # 7 Polarization: -127.53 SS G_CDS: -5.62 Total: -133.14 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.07 Total: -27.61 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -78.59 2.28 -76.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989583669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.206 kcal (2) G-P(sol) polarization free energy of solvation -78.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds