Wall clock time and date at job start Tue Mar 31 2020 22:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39319 * 119.11395 * 2 1 4 4 C 1.36573 * 119.90451 * 179.97438 * 3 2 1 5 5 C 1.40895 * 118.15974 * 0.02562 * 4 3 2 6 6 C 1.40183 * 121.22026 * 180.02562 * 5 4 3 7 7 C 1.38549 * 119.40266 * 179.97438 * 6 5 4 8 8 C 1.47767 * 119.80649 * 179.97438 * 7 6 5 9 9 O 1.21566 * 119.99884 * 24.74005 * 8 7 6 10 10 N 1.34776 * 119.99970 * 204.74490 * 8 7 6 11 11 C 1.47419 * 125.64953 * 5.41087 * 10 8 7 12 12 C 1.55133 * 104.72467 * 155.82415 * 11 10 8 13 13 H 1.09007 * 111.18685 * 279.19609 * 12 11 10 14 14 N 1.46495 * 110.94328 * 155.29216 * 12 11 10 15 15 C 1.36940 * 119.99989 * 92.95562 * 14 12 11 16 16 H 1.08005 * 119.99823 * 0.02562 * 15 14 12 17 17 C 1.38807 * 120.00048 * 179.97438 * 15 14 12 18 18 N 1.31621 * 120.00170 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99943 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47100 * 89.99833 * 19 17 15 21 21 H 1.48498 * 109.47082 * 209.99950 * 19 17 15 22 22 H 1.48503 * 109.47034 * 329.99862 * 19 17 15 23 23 C 1.55158 * 101.48099 * 37.29477 * 12 11 10 24 24 C 1.47021 * 125.64723 * 185.73331 * 10 8 7 25 25 H 1.09003 * 109.87899 * 300.43181 * 24 10 8 26 26 C 1.52995 * 109.88745 * 61.59533 * 24 10 8 27 27 C 1.40641 * 120.38935 * 0.02562 * 7 6 5 28 28 C 1.35703 * 120.91925 * 359.97064 * 27 7 6 29 29 C 1.40756 * 120.11553 * 0.02562 * 28 27 7 30 30 N 1.31123 * 119.11614 * 179.73555 * 2 1 3 31 31 H 1.08995 * 109.46890 * 90.00557 * 1 2 3 32 32 H 1.08998 * 109.46976 * 329.99710 * 1 2 3 33 33 H 1.09003 * 109.46440 * 210.00166 * 1 2 3 34 34 H 1.08000 * 120.04533 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.92117 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.29948 * 359.94976 * 6 5 4 37 37 H 1.09000 * 110.37669 * 274.75407 * 11 10 8 38 38 H 1.09002 * 110.36816 * 37.07805 * 11 10 8 39 39 H 0.96998 * 120.00324 * 272.96042 * 14 12 11 40 40 H 0.96998 * 119.99676 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.71730 * 205.96989 * 23 12 11 42 42 H 1.09003 * 110.71734 * 82.70368 * 23 12 11 43 43 H 1.09002 * 109.46687 * 58.54772 * 26 24 10 44 44 H 1.09001 * 109.47297 * 178.54444 * 26 24 10 45 45 H 1.08997 * 109.47502 * 298.55057 * 26 24 10 46 46 H 1.08001 * 119.53547 * 179.97438 * 27 7 6 47 47 H 1.07999 * 119.93809 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2172 0.0000 4 6 3.5505 1.2360 0.0005 5 6 4.2325 0.0031 0.0005 6 6 5.6332 -0.0524 0.0016 7 6 6.2651 -1.2854 0.0021 8 6 7.7411 -1.3544 0.0026 9 8 8.3927 -0.4275 0.4432 10 7 8.3650 -2.4448 -0.4855 11 6 7.7081 -3.5855 -1.1492 12 6 8.8131 -4.2142 -2.0382 13 1 8.9281 -3.6636 -2.9720 14 7 8.5351 -5.6290 -2.2970 15 6 7.8451 -5.9968 -3.4212 16 1 7.5062 -5.2437 -4.1173 17 6 7.5821 -7.3375 -3.6667 18 7 6.9194 -7.6910 -4.7475 19 14 8.1689 -8.6400 -2.4630 20 1 7.1190 -8.8775 -1.4400 21 1 8.4420 -9.9030 -3.1947 22 1 9.4123 -8.1747 -1.7975 23 6 10.0655 -4.0490 -1.1373 24 6 9.8127 -2.6966 -0.4384 25 1 10.3443 -1.9030 -0.9634 26 6 10.2816 -2.7670 1.0162 27 6 5.5098 -2.4719 0.0009 28 6 4.1533 -2.4350 0.0000 29 6 3.4805 -1.1986 -0.0005 30 7 2.1450 -1.1455 0.0053 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 0.8900 0.5139 33 1 -0.3632 -0.8900 0.5139 34 1 1.6312 2.1444 0.0004 35 1 4.0926 2.1701 0.0010 36 1 6.2146 0.8578 0.0016 37 1 7.3584 -4.3052 -0.4090 38 1 6.8777 -3.2395 -1.7647 39 1 8.8397 -6.3054 -1.6720 40 1 6.7360 -8.6279 -4.9191 41 1 10.9720 -4.0077 -1.7411 42 1 10.1239 -4.8558 -0.4067 43 1 9.7404 -3.5586 1.5345 44 1 11.3504 -2.9795 1.0436 45 1 10.0881 -1.8132 1.5070 46 1 6.0167 -3.4256 0.0009 47 1 3.5891 -3.3558 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989583672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:29 Heat of formation + Delta-G solvation = 43.225500 kcal Electronic energy + Delta-G solvation = -28839.516477 eV Core-core repulsion = 24987.623104 eV Total energy + Delta-G solvation = -3851.893373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14926 -40.10052 -37.80763 -36.93771 -34.42431 -33.73929 -32.71918 -31.63253 -31.28815 -30.24827 -29.00825 -28.12890 -25.79116 -24.25978 -23.94273 -23.32558 -22.26387 -21.49888 -20.53936 -19.38446 -18.46923 -17.77582 -17.32926 -16.62441 -16.35871 -15.70909 -15.25894 -14.94070 -14.66334 -14.56079 -14.19860 -14.05138 -13.89068 -13.68625 -13.34611 -13.24259 -13.20418 -13.08205 -12.68534 -12.57559 -12.44692 -12.36709 -12.20002 -11.95605 -11.51217 -11.45933 -11.43763 -11.13020 -10.82723 -10.74315 -10.73175 -10.43545 -10.14286 -9.88396 -9.69952 -9.67383 -9.10472 -8.85476 -8.57403 -8.32731 -7.45128 -5.88748 -3.27633 0.08736 0.53268 1.75487 2.34446 3.00451 3.21080 3.29385 3.31743 3.38687 3.93910 3.94844 4.32270 4.42031 4.45854 4.48070 4.57977 4.79199 4.86890 4.92422 4.98993 5.05381 5.13191 5.15609 5.25436 5.30625 5.31188 5.44064 5.47588 5.59463 5.61120 5.64581 5.66698 5.71310 5.83891 5.85245 5.86616 5.90388 6.00916 6.10128 6.17186 6.20542 6.27448 6.30672 6.34090 6.52023 6.62149 6.65498 7.62705 7.74193 7.84883 8.20483 8.29523 9.05681 9.77555 9.95071 11.28693 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.003284 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.155951 B = 8525.226918 C =10691.678425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.163 3.837 3 C -0.180 4.180 4 C -0.044 4.044 5 C -0.120 4.120 6 C -0.032 4.032 7 C -0.125 4.125 8 C 0.573 3.427 9 O -0.546 6.546 10 N -0.604 5.604 11 C 0.067 3.933 12 C 0.177 3.823 13 H 0.078 0.922 14 N -0.734 5.734 15 C -0.256 4.256 16 H 0.093 0.907 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.883 3.117 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.141 4.141 24 C 0.139 3.861 25 H 0.076 0.924 26 C -0.161 4.161 27 C -0.081 4.081 28 C -0.099 4.099 29 C 0.150 3.850 30 N -0.478 5.478 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.365 0.635 40 H 0.261 0.739 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.151 0.849 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 16.849 12.016 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.010 3.990 3 C -0.200 4.200 4 C -0.070 4.070 5 C -0.122 4.122 6 C -0.051 4.051 7 C -0.128 4.128 8 C 0.363 3.637 9 O -0.425 6.425 10 N -0.336 5.336 11 C -0.058 4.058 12 C 0.065 3.935 13 H 0.096 0.904 14 N -0.375 5.375 15 C -0.385 4.385 16 H 0.110 0.890 17 C -0.185 4.185 18 N -0.574 5.574 19 Si 0.713 3.287 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.180 4.180 24 C 0.035 3.965 25 H 0.094 0.906 26 C -0.219 4.219 27 C -0.101 4.101 28 C -0.117 4.117 29 C 0.029 3.971 30 N -0.187 5.187 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.198 0.802 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.168 0.832 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.885 16.485 12.018 21.233 hybrid contribution 0.735 -0.329 0.730 1.087 sum -5.150 16.155 12.748 21.214 Atomic orbital electron populations 1.20803 0.88565 1.03684 1.03449 1.21568 0.97245 0.88231 0.91939 1.21694 0.94969 0.99269 1.04039 1.21524 0.94493 0.97206 0.93784 1.18759 0.94305 0.94317 1.04799 1.21333 0.92292 0.97650 0.93860 1.19892 0.93192 0.94136 1.05567 1.17863 0.86839 0.81213 0.77799 1.90740 1.67046 1.36669 1.48062 1.48470 1.08410 1.19379 1.57368 1.23779 0.98992 0.86952 0.96125 1.21331 0.90038 0.86675 0.95417 0.90380 1.42660 1.67520 1.00738 1.26625 1.19071 1.27789 0.93152 0.98522 0.88961 1.24683 0.99834 0.96790 0.97222 1.69698 1.44402 1.16641 1.26616 0.86590 0.78662 0.82337 0.81151 1.20895 1.21607 1.20197 1.23099 1.00223 0.95364 0.99344 1.21529 0.80691 0.97661 0.96570 0.90561 1.22131 1.01125 1.02637 0.96007 1.21635 0.93966 0.98941 0.95519 1.20741 0.93819 0.96637 1.00513 1.18987 0.89022 0.92946 0.96158 1.67916 1.08406 1.28712 1.13669 0.89952 0.90511 0.90175 0.84445 0.84100 0.84131 0.90982 0.90161 0.80193 0.92839 0.89904 0.90551 0.92521 0.91675 0.91665 0.83194 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.14 36.01 0.37 -0.39 16 2 C 0.16 1.71 6.78 -82.49 -0.56 1.15 16 3 C -0.18 -1.58 9.64 -39.78 -0.38 -1.96 16 4 C -0.04 -0.43 9.89 -39.18 -0.39 -0.82 16 5 C -0.12 -1.50 5.74 -106.81 -0.61 -2.11 16 6 C -0.03 -0.41 9.34 -38.74 -0.36 -0.77 16 7 C -0.12 -1.78 5.67 -104.98 -0.59 -2.38 16 8 C 0.57 9.00 7.38 -12.36 -0.09 8.91 16 9 O -0.55 -9.67 15.83 5.31 0.08 -9.58 16 10 N -0.60 -8.98 3.06 -164.01 -0.50 -9.49 16 11 C 0.07 1.04 4.68 -2.41 -0.01 1.03 16 12 C 0.18 3.05 3.73 -65.66 -0.24 2.81 16 13 H 0.08 1.42 8.09 -51.92 -0.42 1.00 16 14 N -0.73 -15.65 5.05 -51.23 -0.26 -15.91 16 15 C -0.26 -6.69 10.44 -15.06 -0.16 -6.85 16 16 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 17 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 18 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 19 Si 0.88 20.82 27.74 -169.99 -4.71 16.10 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 23 C -0.14 -1.97 6.12 -24.90 -0.15 -2.13 16 24 C 0.14 1.90 3.43 -66.96 -0.23 1.67 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 C -0.16 -2.00 9.11 37.15 0.34 -1.66 16 27 C -0.08 -1.11 7.95 -39.58 -0.31 -1.42 16 28 C -0.10 -1.35 9.95 -39.54 -0.39 -1.74 16 29 C 0.15 2.09 6.61 -84.78 -0.56 1.53 16 30 N -0.48 -6.43 10.23 -7.16 -0.07 -6.50 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 36 H 0.14 1.64 7.82 -52.49 -0.41 1.23 16 37 H 0.07 1.10 6.81 -51.93 -0.35 0.75 16 38 H 0.08 1.30 6.81 -51.93 -0.35 0.95 16 39 H 0.36 7.62 5.62 -40.82 -0.23 7.40 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.90 7.08 -51.93 -0.37 0.53 16 46 H 0.15 2.00 4.53 -52.49 -0.24 1.76 16 47 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -32.36 380.63 -9.99 -42.35 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.59 Total: 9.31 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.45 Total: -4.91 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.06 Total: -59.02 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.71 Total: 16.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.36 -9.99 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989583672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.578 kcal (2) G-P(sol) polarization free energy of solvation -32.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds