Wall clock time and date at job start Tue Mar 31 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39319 * 119.11395 * 2 1 4 4 C 1.36573 * 119.90451 * 179.97438 * 3 2 1 5 5 C 1.40895 * 118.15974 * 0.02562 * 4 3 2 6 6 C 1.40183 * 121.22026 * 180.02562 * 5 4 3 7 7 C 1.38549 * 119.40266 * 179.97438 * 6 5 4 8 8 C 1.47767 * 119.80649 * 179.97438 * 7 6 5 9 9 O 1.21566 * 119.99884 * 24.74005 * 8 7 6 10 10 N 1.34776 * 119.99970 * 204.74490 * 8 7 6 11 11 C 1.47419 * 125.64953 * 5.41087 * 10 8 7 12 12 C 1.55133 * 104.72467 * 155.82415 * 11 10 8 13 13 H 1.09007 * 111.18685 * 279.19609 * 12 11 10 14 14 N 1.46495 * 110.94328 * 155.29216 * 12 11 10 15 15 C 1.36940 * 119.99989 * 92.95562 * 14 12 11 16 16 H 1.08005 * 119.99823 * 0.02562 * 15 14 12 17 17 C 1.38807 * 120.00048 * 179.97438 * 15 14 12 18 18 N 1.31621 * 120.00170 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 119.99943 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47100 * 89.99833 * 19 17 15 21 21 H 1.48498 * 109.47082 * 209.99950 * 19 17 15 22 22 H 1.48503 * 109.47034 * 329.99862 * 19 17 15 23 23 C 1.55158 * 101.48099 * 37.29477 * 12 11 10 24 24 C 1.47021 * 125.64723 * 185.73331 * 10 8 7 25 25 H 1.09003 * 109.87899 * 300.43181 * 24 10 8 26 26 C 1.52995 * 109.88745 * 61.59533 * 24 10 8 27 27 C 1.40641 * 120.38935 * 0.02562 * 7 6 5 28 28 C 1.35703 * 120.91925 * 359.97064 * 27 7 6 29 29 C 1.40756 * 120.11553 * 0.02562 * 28 27 7 30 30 N 1.31123 * 119.11614 * 179.73555 * 2 1 3 31 31 H 1.08995 * 109.46890 * 90.00557 * 1 2 3 32 32 H 1.08998 * 109.46976 * 329.99710 * 1 2 3 33 33 H 1.09003 * 109.46440 * 210.00166 * 1 2 3 34 34 H 1.08000 * 120.04533 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.92117 * 180.02562 * 4 3 2 36 36 H 1.08001 * 120.29948 * 359.94976 * 6 5 4 37 37 H 1.09000 * 110.37669 * 274.75407 * 11 10 8 38 38 H 1.09002 * 110.36816 * 37.07805 * 11 10 8 39 39 H 0.96998 * 120.00324 * 272.96042 * 14 12 11 40 40 H 0.96998 * 119.99676 * 179.97438 * 18 17 15 41 41 H 1.09002 * 110.71730 * 205.96989 * 23 12 11 42 42 H 1.09003 * 110.71734 * 82.70368 * 23 12 11 43 43 H 1.09002 * 109.46687 * 58.54772 * 26 24 10 44 44 H 1.09001 * 109.47297 * 178.54444 * 26 24 10 45 45 H 1.08997 * 109.47502 * 298.55057 * 26 24 10 46 46 H 1.08001 * 119.53547 * 179.97438 * 27 7 6 47 47 H 1.07999 * 119.93809 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2172 0.0000 4 6 3.5505 1.2360 0.0005 5 6 4.2325 0.0031 0.0005 6 6 5.6332 -0.0524 0.0016 7 6 6.2651 -1.2854 0.0021 8 6 7.7411 -1.3544 0.0026 9 8 8.3927 -0.4275 0.4432 10 7 8.3650 -2.4448 -0.4855 11 6 7.7081 -3.5855 -1.1492 12 6 8.8131 -4.2142 -2.0382 13 1 8.9281 -3.6636 -2.9720 14 7 8.5351 -5.6290 -2.2970 15 6 7.8451 -5.9968 -3.4212 16 1 7.5062 -5.2437 -4.1173 17 6 7.5821 -7.3375 -3.6667 18 7 6.9194 -7.6910 -4.7475 19 14 8.1689 -8.6400 -2.4630 20 1 7.1190 -8.8775 -1.4400 21 1 8.4420 -9.9030 -3.1947 22 1 9.4123 -8.1747 -1.7975 23 6 10.0655 -4.0490 -1.1373 24 6 9.8127 -2.6966 -0.4384 25 1 10.3443 -1.9030 -0.9634 26 6 10.2816 -2.7670 1.0162 27 6 5.5098 -2.4719 0.0009 28 6 4.1533 -2.4350 0.0000 29 6 3.4805 -1.1986 -0.0005 30 7 2.1450 -1.1455 0.0053 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 0.8900 0.5139 33 1 -0.3632 -0.8900 0.5139 34 1 1.6312 2.1444 0.0004 35 1 4.0926 2.1701 0.0010 36 1 6.2146 0.8578 0.0016 37 1 7.3584 -4.3052 -0.4090 38 1 6.8777 -3.2395 -1.7647 39 1 8.8397 -6.3054 -1.6720 40 1 6.7360 -8.6279 -4.9191 41 1 10.9720 -4.0077 -1.7411 42 1 10.1239 -4.8558 -0.4067 43 1 9.7404 -3.5586 1.5345 44 1 11.3504 -2.9795 1.0436 45 1 10.0881 -1.8132 1.5070 46 1 6.0167 -3.4256 0.0009 47 1 3.5891 -3.3558 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989583672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:28 Heat of formation + Delta-G solvation = 23.602967 kcal Electronic energy + Delta-G solvation = -28840.367374 eV Core-core repulsion = 24987.623104 eV Total energy + Delta-G solvation = -3852.744270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.12021 -41.22913 -39.02846 -37.99510 -36.13642 -34.61620 -33.74405 -33.46500 -32.27489 -31.19782 -30.55175 -28.96957 -26.95166 -25.74242 -24.83647 -24.69361 -23.15091 -22.68899 -21.96241 -20.51687 -19.78022 -19.37520 -18.36905 -17.78891 -17.37505 -16.91163 -16.42301 -16.25345 -15.80715 -15.60911 -15.52364 -15.20616 -15.07982 -14.81511 -14.77420 -14.39147 -14.22632 -14.00362 -13.92921 -13.77455 -13.58590 -13.21510 -13.14163 -13.01917 -12.96236 -12.86917 -12.54713 -12.35718 -12.17463 -12.13223 -11.88936 -11.83736 -11.63961 -11.51559 -11.15752 -10.93969 -10.53697 -9.83447 -9.74864 -9.36870 -9.31208 -8.01071 -5.37326 -0.83744 -0.38534 0.82699 1.33065 1.41793 1.44901 1.52058 1.82377 2.13898 2.50326 2.99065 3.10110 3.22573 3.28071 3.50317 3.56647 3.65232 3.76021 3.80611 3.85788 3.95923 3.98082 4.08687 4.17199 4.30344 4.36993 4.39631 4.44369 4.62533 4.68648 4.70521 4.77510 4.79228 4.81028 4.82364 4.91430 4.97839 5.02997 5.07590 5.15242 5.16811 5.19682 5.23227 5.32690 5.39914 5.49969 5.72785 5.77796 6.21754 6.39043 6.88710 6.98374 7.07640 7.79963 8.00203 9.19811 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.003284 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.155951 B = 8525.226918 C =10691.678425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 C -0.171 4.171 4 C -0.045 4.045 5 C -0.135 4.135 6 C -0.022 4.022 7 C -0.149 4.149 8 C 0.575 3.425 9 O -0.569 6.569 10 N -0.603 5.603 11 C 0.081 3.919 12 C 0.168 3.832 13 H 0.064 0.936 14 N -0.734 5.734 15 C -0.234 4.234 16 H 0.058 0.942 17 C -0.058 4.058 18 N -0.982 5.982 19 Si 0.952 3.048 20 H -0.279 1.279 21 H -0.301 1.301 22 H -0.244 1.244 23 C -0.126 4.126 24 C 0.136 3.864 25 H 0.078 0.922 26 C -0.153 4.153 27 C -0.083 4.083 28 C -0.113 4.113 29 C 0.132 3.868 30 N -0.516 5.516 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.180 0.820 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.371 0.629 40 H 0.258 0.742 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.148 0.852 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 18.668 14.006 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.006 3.994 3 C -0.191 4.191 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.042 4.042 7 C -0.152 4.152 8 C 0.365 3.635 9 O -0.450 6.450 10 N -0.335 5.335 11 C -0.045 4.045 12 C 0.057 3.943 13 H 0.082 0.918 14 N -0.377 5.377 15 C -0.365 4.365 16 H 0.076 0.924 17 C -0.250 4.250 18 N -0.632 5.632 19 Si 0.779 3.221 20 H -0.205 1.205 21 H -0.228 1.228 22 H -0.168 1.168 23 C -0.165 4.165 24 C 0.033 3.967 25 H 0.096 0.904 26 C -0.211 4.211 27 C -0.102 4.102 28 C -0.132 4.132 29 C 0.011 3.989 30 N -0.226 5.226 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.198 0.802 35 H 0.192 0.808 36 H 0.171 0.829 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.205 0.795 40 H 0.067 0.933 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.165 0.835 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.677 18.352 14.052 23.801 hybrid contribution 0.517 -0.672 0.072 0.851 sum -5.159 17.680 14.124 23.210 Atomic orbital electron populations 1.20937 0.86169 1.04882 1.04383 1.22329 0.98988 0.88255 0.89841 1.22155 0.94829 1.00176 1.01909 1.21951 0.95179 0.97194 0.92665 1.18974 0.94139 0.95281 1.05369 1.21517 0.92734 0.97547 0.92396 1.19865 0.92479 0.94938 1.07913 1.18041 0.87336 0.80864 0.77251 1.90716 1.67663 1.37342 1.49259 1.48468 1.08997 1.18965 1.57029 1.23461 0.97913 0.87259 0.95841 1.21466 0.92453 0.84408 0.95923 0.91773 1.42536 1.67165 1.02652 1.25315 1.18990 1.26396 0.92308 0.98833 0.92420 1.25488 1.00902 0.99317 0.99319 1.69887 1.47094 1.16795 1.29376 0.85468 0.79399 0.78578 0.78680 1.20472 1.22783 1.16838 1.23019 0.98823 0.95796 0.98849 1.21664 0.79903 0.97476 0.97648 0.90407 1.22064 1.02651 1.01834 0.94531 1.21539 0.93978 0.98749 0.95982 1.20818 0.93921 0.97114 1.01339 1.19168 0.89732 0.93409 0.96602 1.67948 1.08265 1.30633 1.15779 0.88945 0.87349 0.90971 0.80239 0.80838 0.82924 0.90362 0.91362 0.79467 0.93347 0.88331 0.89340 0.92382 0.89261 0.93205 0.83477 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.14 71.24 0.72 -0.50 16 2 C 0.16 3.02 6.78 42.93 0.29 3.31 16 3 C -0.17 -2.43 9.64 22.14 0.21 -2.21 16 4 C -0.04 -0.74 9.89 22.53 0.22 -0.52 16 5 C -0.14 -3.30 5.74 -21.28 -0.12 -3.42 16 6 C -0.02 -0.57 9.34 22.82 0.21 -0.36 16 7 C -0.15 -4.33 5.67 -20.10 -0.11 -4.44 16 8 C 0.57 18.06 7.38 86.76 0.64 18.70 16 9 O -0.57 -19.98 15.83 -3.92 -0.06 -20.05 16 10 N -0.60 -17.71 3.06 -791.09 -2.42 -20.13 16 11 C 0.08 2.52 4.68 86.93 0.41 2.93 16 12 C 0.17 5.69 3.73 46.46 0.17 5.86 16 13 H 0.06 2.36 8.09 -2.38 -0.02 2.34 16 14 N -0.73 -30.78 5.05 -316.00 -1.59 -32.37 16 15 C -0.23 -12.51 10.44 84.03 0.88 -11.63 16 16 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 17 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 18 N -0.98 -61.12 13.97 21.65 0.30 -60.82 16 19 Si 0.95 42.91 27.74 68.60 1.90 44.81 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.24 -9.62 6.52 99.48 0.65 -8.97 16 23 C -0.13 -3.24 6.12 31.78 0.19 -3.04 16 24 C 0.14 3.49 3.43 45.34 0.16 3.65 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 C -0.15 -3.47 9.11 71.98 0.66 -2.82 16 27 C -0.08 -2.37 7.95 22.27 0.18 -2.19 16 28 C -0.11 -3.27 9.95 22.30 0.22 -3.04 16 29 C 0.13 3.73 6.61 40.35 0.27 4.00 16 30 N -0.52 -13.85 10.23 -176.57 -1.81 -15.66 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 0.56 8.07 -2.39 -0.02 0.54 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 35 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 36 H 0.15 3.41 7.82 -2.91 -0.02 3.39 16 37 H 0.08 2.38 6.81 -2.39 -0.02 2.36 16 38 H 0.07 2.30 6.81 -2.39 -0.02 2.28 16 39 H 0.37 14.68 5.62 -92.71 -0.52 14.16 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.09 2.11 7.71 -2.39 -0.02 2.09 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.05 1.31 7.08 -2.39 -0.02 1.29 16 46 H 0.15 4.11 4.53 -2.91 -0.01 4.10 16 47 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -73.14 380.63 2.40 -70.74 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.42 Total: 32.03 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 5.66 Total: 1.44 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -5.52 Total: -128.98 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.06 Total: -20.05 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.90 Total: 44.81 kcal Total: -73.14 2.40 -70.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989583672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.346 kcal (2) G-P(sol) polarization free energy of solvation -73.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds