Wall clock time and date at job start Tue Mar 31 2020 22:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39313 * 119.06185 * 2 1 4 4 C 1.38855 * 119.58049 * 180.25606 * 3 2 1 5 5 C 1.47909 * 121.11214 * 179.76694 * 4 3 2 6 6 O 1.21545 * 119.99851 * 293.04701 * 5 4 3 7 7 N 1.34771 * 119.99763 * 113.04100 * 5 4 3 8 8 C 1.48221 * 119.96630 * 176.87195 * 7 5 4 9 9 C 1.47139 * 110.33944 * 102.47718 * 8 7 5 10 10 C 1.53793 * 111.84464 * 58.29594 * 9 8 7 11 11 N 1.43467 * 107.95564 * 281.66648 * 10 9 8 12 12 C 1.36938 * 118.94105 * 273.60950 * 11 10 9 13 13 H 1.08006 * 119.99971 * 24.80266 * 12 11 10 14 14 C 1.38813 * 120.00130 * 204.81375 * 12 11 10 15 15 N 1.31618 * 120.00093 * 32.65508 * 14 12 11 16 16 Si 1.86803 * 119.99898 * 212.65982 * 14 12 11 17 17 H 1.48494 * 109.47157 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47128 * 59.99286 * 16 14 12 19 19 H 1.48502 * 109.46656 * 299.99706 * 16 14 12 20 20 C 1.48856 * 122.11922 * 93.89151 * 11 10 9 21 21 C 1.43613 * 119.97375 * 356.85450 * 7 5 4 22 22 C 1.41814 * 117.77691 * 359.50306 * 4 3 2 23 23 C 1.40106 * 121.37036 * 180.29328 * 22 4 3 24 24 C 1.36249 * 119.64153 * 179.97438 * 23 22 4 25 25 C 1.39343 * 120.83587 * 359.97438 * 24 23 22 26 26 C 1.36060 * 121.05490 * 359.97438 * 25 24 23 27 27 C 1.40712 * 119.74139 * 0.02562 * 26 25 24 28 28 N 1.30969 * 119.05963 * 179.76137 * 2 1 3 29 29 H 1.08997 * 109.47620 * 270.23263 * 1 2 3 30 30 H 1.09000 * 109.47319 * 30.23836 * 1 2 3 31 31 H 1.09009 * 109.47259 * 150.23422 * 1 2 3 32 32 H 1.08008 * 120.21021 * 0.05056 * 3 2 1 33 33 H 1.08999 * 109.32625 * 342.20752 * 8 7 5 34 34 H 1.09002 * 109.17757 * 222.64609 * 8 7 5 35 35 H 1.09003 * 109.00437 * 297.68399 * 9 8 7 36 36 H 1.09003 * 109.00700 * 178.90574 * 9 8 7 37 37 H 1.08999 * 109.76286 * 162.05437 * 10 9 8 38 38 H 1.08997 * 109.80871 * 41.30293 * 10 9 8 39 39 H 0.96995 * 120.00218 * 5.81524 * 15 14 12 40 40 H 1.09000 * 109.48026 * 80.34553 * 20 11 10 41 41 H 1.09004 * 109.47633 * 200.37659 * 20 11 10 42 42 H 1.09009 * 108.87546 * 31.46466 * 21 7 5 43 43 H 1.09005 * 108.88064 * 149.99627 * 21 7 5 44 44 H 1.07998 * 120.17617 * 359.94911 * 23 22 4 45 45 H 1.07998 * 119.57961 * 179.97438 * 24 23 22 46 46 H 1.08012 * 119.47278 * 180.02562 * 25 24 23 47 47 H 1.07994 * 120.13550 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1836 1.2177 0.0000 4 6 3.5721 1.2303 -0.0054 5 6 4.3249 2.5035 -0.0107 6 8 4.2757 3.2345 -0.9805 7 7 5.0652 2.8531 1.0598 8 6 5.8741 4.0946 1.0271 9 6 5.2049 5.1613 1.7882 10 6 4.9635 4.7549 3.2517 11 7 3.8217 3.8869 3.2871 12 6 2.5718 4.4395 3.3736 13 1 2.4008 5.4462 3.0218 14 6 1.5244 3.7058 3.9136 15 7 1.7565 2.8362 4.8740 16 14 -0.2144 3.9524 3.2771 17 1 -1.1424 3.0561 4.0123 18 1 -0.2612 3.6316 1.8278 19 1 -0.6217 5.3653 3.4847 20 6 3.9524 2.4049 3.2391 21 6 5.0693 2.0225 2.2314 22 6 4.2444 -0.0184 0.0001 23 6 5.6434 -0.0935 0.0014 24 6 6.2528 -1.3121 0.0073 25 6 5.5022 -2.4860 0.0127 26 6 4.1420 -2.4494 0.0127 27 6 3.4771 -1.2093 0.0066 28 7 2.1431 -1.1448 0.0048 29 1 -0.3634 0.0042 1.0276 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3634 -0.8921 -0.5102 32 1 1.6318 2.1462 0.0008 33 1 6.0017 4.4149 -0.0070 34 1 6.8517 3.8967 1.4667 35 1 4.2467 5.3845 1.3190 36 1 5.8264 6.0565 1.7663 37 1 4.7703 5.6428 3.8537 38 1 5.8373 4.2304 3.6383 39 1 2.6425 2.7680 5.2628 40 1 4.2085 2.0303 4.2301 41 1 3.0073 1.9670 2.9177 42 1 4.9309 0.9846 1.9284 43 1 6.0347 2.1184 2.7284 44 1 6.2356 0.8097 -0.0027 45 1 7.3313 -1.3688 0.0079 46 1 6.0081 -3.4403 0.0177 47 1 3.5749 -3.3685 0.0173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989607661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:46 Heat of formation + Delta-G solvation = 53.230582 kcal Electronic energy + Delta-G solvation = -31188.729293 eV Core-core repulsion = 27337.269773 eV Total energy + Delta-G solvation = -3851.459520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.19493 -39.51986 -37.41497 -37.09978 -34.54878 -33.84860 -32.41423 -31.93348 -30.88278 -30.10216 -27.79230 -27.71746 -25.72345 -24.28824 -23.72061 -23.17717 -22.54503 -21.52778 -19.85362 -18.75016 -18.17094 -17.63706 -17.24196 -16.60636 -16.25069 -15.59170 -14.99714 -14.75009 -14.57320 -14.49501 -14.25330 -13.98563 -13.67981 -13.46834 -13.35383 -13.13951 -13.01821 -12.90709 -12.66028 -12.39989 -12.17189 -12.11649 -11.65299 -11.43284 -11.35265 -11.29474 -11.11683 -10.75397 -10.51078 -10.40328 -10.34379 -10.25108 -10.05429 -9.96611 -9.50571 -9.27540 -8.62862 -8.31834 -8.29221 -8.22663 -6.95436 -6.15673 -3.22633 0.28423 0.83491 1.86623 2.75105 2.88758 3.29587 3.45281 3.48096 3.66666 4.08795 4.18851 4.45537 4.57088 4.67880 4.72715 4.79594 5.05704 5.07488 5.13399 5.21969 5.31890 5.38628 5.43419 5.45639 5.48974 5.60205 5.73394 5.77738 5.78234 5.87632 5.90071 5.92662 5.98496 6.02695 6.10283 6.13790 6.28252 6.30316 6.35473 6.39179 6.52079 6.59375 6.70051 6.81176 6.83485 6.90932 7.08873 7.66301 7.97061 8.03129 8.33811 8.51611 9.09569 9.80900 10.20625 11.12105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.005877 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.447102 B = 4763.559284 C = 6180.959372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.115 4.115 4 C -0.051 4.051 5 C 0.569 3.431 6 O -0.538 6.538 7 N -0.572 5.572 8 C 0.129 3.871 9 C -0.169 4.169 10 C 0.164 3.836 11 N -0.592 5.592 12 C -0.360 4.360 13 H 0.055 0.945 14 C -0.014 4.014 15 N -0.902 5.902 16 Si 1.043 2.957 17 H -0.284 1.284 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.142 3.858 21 C 0.080 3.920 22 C -0.085 4.085 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.104 4.104 26 C -0.090 4.090 27 C 0.134 3.866 28 N -0.471 5.471 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.031 0.969 39 H 0.267 0.733 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -8.292 -8.396 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.017 3.983 3 C -0.136 4.136 4 C -0.062 4.062 5 C 0.356 3.644 6 O -0.416 6.416 7 N -0.303 5.303 8 C 0.008 3.992 9 C -0.210 4.210 10 C 0.036 3.964 11 N -0.314 5.314 12 C -0.489 4.489 13 H 0.073 0.927 14 C -0.217 4.217 15 N -0.541 5.541 16 Si 0.872 3.128 17 H -0.210 1.210 18 H -0.219 1.219 19 H -0.219 1.219 20 C 0.016 3.984 21 C -0.046 4.046 22 C -0.087 4.087 23 C -0.115 4.115 24 C -0.134 4.134 25 C -0.124 4.124 26 C -0.108 4.108 27 C 0.012 3.988 28 N -0.181 5.181 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.956 -9.273 -8.742 14.067 hybrid contribution 1.996 1.547 0.071 2.526 sum 7.952 -7.725 -8.670 14.075 Atomic orbital electron populations 1.20832 0.88056 1.03636 1.04046 1.21413 0.97361 0.87454 0.92102 1.22147 0.93118 1.00164 0.98172 1.20310 0.94474 0.92929 0.98531 1.17995 0.78491 0.84853 0.83050 1.90760 1.63231 1.52802 1.34804 1.47328 1.45091 1.24301 1.13554 1.20653 0.92731 0.84256 1.01514 1.21835 1.01450 0.96981 1.00766 1.20281 0.89703 0.94069 0.92395 1.43693 1.02594 0.99714 1.85414 1.19837 0.86664 1.02157 1.40247 0.92748 1.25607 1.02913 0.98242 0.94984 1.70819 1.24321 1.39605 1.19307 0.83856 0.76782 0.75948 0.76198 1.20995 1.21915 1.21904 1.22082 0.96611 0.85125 0.94618 1.22201 1.01111 0.94126 0.87141 1.18634 0.94671 0.92613 1.02786 1.20967 0.92729 0.98703 0.99081 1.20881 1.00237 0.92084 1.00219 1.20865 0.93690 0.98581 0.99278 1.20791 0.94157 0.96124 0.99761 1.18762 0.89012 0.92591 0.98441 1.67630 1.08496 1.28762 1.13223 0.89392 0.90221 0.90173 0.83638 0.90189 0.91715 0.91049 0.92387 0.93397 0.95111 0.92208 0.94872 0.91443 0.90771 0.91501 0.85563 0.85525 0.85309 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.14 36.00 0.36 -1.06 16 2 C 0.17 2.78 6.78 -82.56 -0.56 2.22 16 3 C -0.12 -2.09 9.48 -38.95 -0.37 -2.46 16 4 C -0.05 -0.94 4.63 -104.34 -0.48 -1.42 16 5 C 0.57 11.06 6.10 -12.30 -0.08 10.98 16 6 O -0.54 -11.76 16.56 5.33 0.09 -11.67 16 7 N -0.57 -10.17 2.09 -177.52 -0.37 -10.54 16 8 C 0.13 2.08 5.68 -5.91 -0.03 2.05 16 9 C -0.17 -2.99 5.64 -29.13 -0.16 -3.16 16 10 C 0.16 3.25 5.63 -5.23 -0.03 3.22 16 11 N -0.59 -13.88 2.40 -171.78 -0.41 -14.29 16 12 C -0.36 -9.68 9.07 -15.06 -0.14 -9.82 16 13 H 0.05 1.52 8.01 -52.48 -0.42 1.10 16 14 C -0.01 -0.38 4.42 -17.43 -0.08 -0.46 16 15 N -0.90 -25.94 12.65 55.49 0.70 -25.24 16 16 Si 1.04 24.63 30.02 -169.99 -5.10 19.53 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 20 C 0.14 3.11 5.17 -1.57 -0.01 3.11 16 21 C 0.08 1.39 4.66 -4.40 -0.02 1.37 16 22 C -0.08 -1.37 4.68 -106.52 -0.50 -1.87 16 23 C -0.10 -1.32 7.78 -39.60 -0.31 -1.62 16 24 C -0.12 -1.28 9.96 -39.89 -0.40 -1.67 16 25 C -0.10 -1.09 9.94 -39.95 -0.40 -1.49 16 26 C -0.09 -1.13 9.98 -39.43 -0.39 -1.53 16 27 C 0.13 2.12 6.61 -84.87 -0.56 1.56 16 28 N -0.47 -7.82 10.19 -7.25 -0.07 -7.89 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 31 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.15 2.69 8.06 -52.48 -0.42 2.27 16 33 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 34 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 35 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 38 H 0.03 0.55 7.59 -51.93 -0.39 0.16 16 39 H 0.27 7.76 6.89 -40.82 -0.28 7.48 16 40 H 0.03 0.76 7.34 -51.93 -0.38 0.38 16 41 H 0.07 1.69 6.97 -51.93 -0.36 1.33 16 42 H 0.07 1.25 4.35 -51.92 -0.23 1.02 16 43 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 44 H 0.13 1.70 6.74 -52.49 -0.35 1.35 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 47 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -32.00 373.07 -10.31 -42.31 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.61 Total: 4.24 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -4.15 Total: -2.07 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.15 Total: -57.96 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.10 Total: 19.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.00 -10.31 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989607661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.538 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds