Wall clock time and date at job start Tue Mar 31 2020 22:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39313 * 119.06185 * 2 1 4 4 C 1.38855 * 119.58049 * 180.25606 * 3 2 1 5 5 C 1.47909 * 121.11214 * 179.76694 * 4 3 2 6 6 O 1.21545 * 119.99851 * 293.04701 * 5 4 3 7 7 N 1.34771 * 119.99763 * 113.04100 * 5 4 3 8 8 C 1.48221 * 119.96630 * 176.87195 * 7 5 4 9 9 C 1.47139 * 110.33944 * 102.47718 * 8 7 5 10 10 C 1.53793 * 111.84464 * 58.29594 * 9 8 7 11 11 N 1.43467 * 107.95564 * 281.66648 * 10 9 8 12 12 C 1.36938 * 118.94105 * 273.60950 * 11 10 9 13 13 H 1.08006 * 119.99971 * 24.80266 * 12 11 10 14 14 C 1.38813 * 120.00130 * 204.81375 * 12 11 10 15 15 N 1.31618 * 120.00093 * 32.65508 * 14 12 11 16 16 Si 1.86803 * 119.99898 * 212.65982 * 14 12 11 17 17 H 1.48494 * 109.47157 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47128 * 59.99286 * 16 14 12 19 19 H 1.48502 * 109.46656 * 299.99706 * 16 14 12 20 20 C 1.48856 * 122.11922 * 93.89151 * 11 10 9 21 21 C 1.43613 * 119.97375 * 356.85450 * 7 5 4 22 22 C 1.41814 * 117.77691 * 359.50306 * 4 3 2 23 23 C 1.40106 * 121.37036 * 180.29328 * 22 4 3 24 24 C 1.36249 * 119.64153 * 179.97438 * 23 22 4 25 25 C 1.39343 * 120.83587 * 359.97438 * 24 23 22 26 26 C 1.36060 * 121.05490 * 359.97438 * 25 24 23 27 27 C 1.40712 * 119.74139 * 0.02562 * 26 25 24 28 28 N 1.30969 * 119.05963 * 179.76137 * 2 1 3 29 29 H 1.08997 * 109.47620 * 270.23263 * 1 2 3 30 30 H 1.09000 * 109.47319 * 30.23836 * 1 2 3 31 31 H 1.09009 * 109.47259 * 150.23422 * 1 2 3 32 32 H 1.08008 * 120.21021 * 0.05056 * 3 2 1 33 33 H 1.08999 * 109.32625 * 342.20752 * 8 7 5 34 34 H 1.09002 * 109.17757 * 222.64609 * 8 7 5 35 35 H 1.09003 * 109.00437 * 297.68399 * 9 8 7 36 36 H 1.09003 * 109.00700 * 178.90574 * 9 8 7 37 37 H 1.08999 * 109.76286 * 162.05437 * 10 9 8 38 38 H 1.08997 * 109.80871 * 41.30293 * 10 9 8 39 39 H 0.96995 * 120.00218 * 5.81524 * 15 14 12 40 40 H 1.09000 * 109.48026 * 80.34553 * 20 11 10 41 41 H 1.09004 * 109.47633 * 200.37659 * 20 11 10 42 42 H 1.09009 * 108.87546 * 31.46466 * 21 7 5 43 43 H 1.09005 * 108.88064 * 149.99627 * 21 7 5 44 44 H 1.07998 * 120.17617 * 359.94911 * 23 22 4 45 45 H 1.07998 * 119.57961 * 179.97438 * 24 23 22 46 46 H 1.08012 * 119.47278 * 180.02562 * 25 24 23 47 47 H 1.07994 * 120.13550 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1836 1.2177 0.0000 4 6 3.5721 1.2303 -0.0054 5 6 4.3249 2.5035 -0.0107 6 8 4.2757 3.2345 -0.9805 7 7 5.0652 2.8531 1.0598 8 6 5.8741 4.0946 1.0271 9 6 5.2049 5.1613 1.7882 10 6 4.9635 4.7549 3.2517 11 7 3.8217 3.8869 3.2871 12 6 2.5718 4.4395 3.3736 13 1 2.4008 5.4462 3.0218 14 6 1.5244 3.7058 3.9136 15 7 1.7565 2.8362 4.8740 16 14 -0.2144 3.9524 3.2771 17 1 -1.1424 3.0561 4.0123 18 1 -0.2612 3.6316 1.8278 19 1 -0.6217 5.3653 3.4847 20 6 3.9524 2.4049 3.2391 21 6 5.0693 2.0225 2.2314 22 6 4.2444 -0.0184 0.0001 23 6 5.6434 -0.0935 0.0014 24 6 6.2528 -1.3121 0.0073 25 6 5.5022 -2.4860 0.0127 26 6 4.1420 -2.4494 0.0127 27 6 3.4771 -1.2093 0.0066 28 7 2.1431 -1.1448 0.0048 29 1 -0.3634 0.0042 1.0276 30 1 -0.3634 0.8878 -0.5175 31 1 -0.3634 -0.8921 -0.5102 32 1 1.6318 2.1462 0.0008 33 1 6.0017 4.4149 -0.0070 34 1 6.8517 3.8967 1.4667 35 1 4.2467 5.3845 1.3190 36 1 5.8264 6.0565 1.7663 37 1 4.7703 5.6428 3.8537 38 1 5.8373 4.2304 3.6383 39 1 2.6425 2.7680 5.2628 40 1 4.2085 2.0303 4.2301 41 1 3.0073 1.9670 2.9177 42 1 4.9309 0.9846 1.9284 43 1 6.0347 2.1184 2.7284 44 1 6.2356 0.8097 -0.0027 45 1 7.3313 -1.3688 0.0079 46 1 6.0081 -3.4403 0.0177 47 1 3.5749 -3.3685 0.0173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989607661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:45 Heat of formation + Delta-G solvation = 35.315482 kcal Electronic energy + Delta-G solvation = -31189.506150 eV Core-core repulsion = 27337.269773 eV Total energy + Delta-G solvation = -3852.236377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.43374 -40.90328 -38.86512 -38.35988 -36.26372 -35.22095 -33.87701 -33.02979 -32.72945 -31.17496 -29.41332 -28.82253 -27.33687 -25.68397 -25.56085 -24.37675 -23.59466 -22.90600 -21.59218 -20.11754 -19.50441 -19.12452 -18.65889 -18.02101 -17.69227 -16.89248 -16.42247 -16.17324 -15.95419 -15.76613 -15.68466 -15.49664 -15.15287 -15.02950 -14.74725 -14.46550 -14.35240 -14.10186 -14.03216 -13.86694 -13.72424 -13.16336 -13.00715 -12.90719 -12.59350 -12.57441 -12.37469 -12.36910 -12.11525 -12.09486 -11.95676 -11.93059 -11.62761 -11.40531 -11.35393 -10.58124 -10.35710 -9.81619 -9.73661 -9.30363 -8.92744 -8.29209 -5.34032 -0.86999 -0.29028 0.73452 1.27767 1.50367 1.54572 1.75018 1.77792 1.96707 2.60264 2.96733 3.06105 3.10699 3.17478 3.51045 3.54714 3.59538 3.78373 3.88747 4.01477 4.05501 4.07569 4.14083 4.29024 4.32542 4.35896 4.40125 4.43877 4.52310 4.59777 4.67836 4.70920 4.76380 4.79856 4.89850 4.92224 4.93510 4.99135 5.07546 5.11352 5.13119 5.32924 5.36173 5.40589 5.44647 5.57342 5.84142 5.87150 6.18583 6.38293 6.76386 6.86271 7.09449 7.79950 8.18776 8.95167 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.005877 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.447102 B = 4763.559284 C = 6180.959372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.154 3.846 3 C -0.141 4.141 4 C -0.070 4.070 5 C 0.567 3.433 6 O -0.572 6.572 7 N -0.569 5.569 8 C 0.125 3.875 9 C -0.154 4.154 10 C 0.159 3.841 11 N -0.605 5.605 12 C -0.360 4.360 13 H 0.036 0.964 14 C -0.056 4.056 15 N -0.925 5.925 16 Si 1.079 2.921 17 H -0.286 1.286 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.150 3.850 21 C 0.094 3.906 22 C -0.097 4.097 23 C -0.117 4.117 24 C -0.094 4.094 25 C -0.086 4.086 26 C -0.101 4.101 27 C 0.110 3.890 28 N -0.477 5.477 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.034 0.966 38 H 0.061 0.939 39 H 0.255 0.745 40 H 0.022 0.978 41 H 0.026 0.974 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.127 0.873 45 H 0.167 0.833 46 H 0.174 0.826 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.911 -10.259 -8.933 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.001 3.999 3 C -0.162 4.162 4 C -0.081 4.081 5 C 0.355 3.645 6 O -0.453 6.453 7 N -0.298 5.298 8 C 0.005 3.995 9 C -0.195 4.195 10 C 0.032 3.968 11 N -0.328 5.328 12 C -0.490 4.490 13 H 0.054 0.946 14 C -0.255 4.255 15 N -0.565 5.565 16 Si 0.905 3.095 17 H -0.211 1.211 18 H -0.208 1.208 19 H -0.207 1.207 20 C 0.024 3.976 21 C -0.031 4.031 22 C -0.099 4.099 23 C -0.136 4.136 24 C -0.111 4.111 25 C -0.105 4.105 26 C -0.119 4.119 27 C -0.012 4.012 28 N -0.187 5.187 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.044 0.956 36 H 0.110 0.890 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.045 0.955 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.145 0.855 45 H 0.185 0.815 46 H 0.191 0.809 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.995 -11.222 -9.278 17.115 hybrid contribution 1.226 2.119 0.239 2.459 sum 10.220 -9.103 -9.039 16.402 Atomic orbital electron populations 1.20879 0.86258 1.04996 1.04096 1.21718 0.98653 0.86921 0.92565 1.22139 0.93593 1.00199 1.00258 1.20385 0.94534 0.93517 0.99641 1.18272 0.78211 0.85024 0.82994 1.90721 1.64445 1.53985 1.36153 1.47434 1.44611 1.24786 1.12979 1.20867 0.94016 0.82965 1.01667 1.21644 1.00001 0.99149 0.98716 1.20463 0.89414 0.93288 0.93662 1.43863 1.02578 1.00721 1.85627 1.19908 0.88604 1.01592 1.38908 0.94635 1.26584 1.05751 0.98247 0.94945 1.70922 1.23628 1.41126 1.20831 0.83358 0.73585 0.76354 0.76240 1.21125 1.20806 1.20690 1.21906 0.96483 0.83954 0.95228 1.22032 1.00652 0.94384 0.86025 1.18802 0.96068 0.91683 1.03343 1.21075 0.91441 1.00232 1.00872 1.21393 1.02287 0.90904 0.96560 1.21397 0.92748 1.00365 0.95993 1.21110 0.95450 0.95322 1.00059 1.19304 0.88949 0.93931 0.99014 1.67684 1.09317 1.28451 1.13228 0.89839 0.89369 0.88319 0.85650 0.90222 0.87251 0.95612 0.88992 0.94750 0.92119 0.93499 0.96004 0.95504 0.89884 0.87961 0.85484 0.81547 0.80891 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.88 10.14 71.23 0.72 -2.16 16 2 C 0.15 5.30 6.78 42.94 0.29 5.59 16 3 C -0.14 -5.49 9.48 22.68 0.21 -5.27 16 4 C -0.07 -2.64 4.63 -19.68 -0.09 -2.73 16 5 C 0.57 22.52 6.10 86.81 0.53 23.05 16 6 O -0.57 -25.90 16.56 -3.86 -0.06 -25.96 16 7 N -0.57 -19.77 2.09 -833.85 -1.74 -21.51 16 8 C 0.12 3.74 5.68 84.22 0.48 4.22 16 9 C -0.15 -5.29 5.64 29.04 0.16 -5.12 16 10 C 0.16 6.14 5.63 87.21 0.49 6.63 16 11 N -0.60 -28.89 2.40 -697.40 -1.67 -30.56 16 12 C -0.36 -20.09 9.07 84.03 0.76 -19.32 16 13 H 0.04 2.08 8.01 -2.91 -0.02 2.06 16 14 C -0.06 -3.19 4.42 84.86 0.38 -2.81 16 15 N -0.92 -55.05 12.65 21.65 0.27 -54.78 16 16 Si 1.08 51.54 30.02 68.60 2.06 53.60 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 C 0.15 6.73 5.17 86.68 0.45 7.17 16 21 C 0.09 3.16 4.66 87.67 0.41 3.57 16 22 C -0.10 -3.10 4.68 -21.09 -0.10 -3.20 16 23 C -0.12 -2.93 7.78 22.26 0.17 -2.76 16 24 C -0.09 -1.61 9.96 22.07 0.22 -1.39 16 25 C -0.09 -1.37 9.94 22.03 0.22 -1.15 16 26 C -0.10 -2.27 9.98 22.37 0.22 -2.04 16 27 C 0.11 3.42 6.61 40.33 0.27 3.68 16 28 N -0.48 -16.03 10.19 -176.85 -1.80 -17.84 16 29 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.09 2.19 8.07 -2.39 -0.02 2.17 16 31 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.13 5.16 8.06 -2.91 -0.02 5.14 16 33 H 0.08 2.45 7.16 -2.39 -0.02 2.44 16 34 H 0.11 2.37 8.05 -2.39 -0.02 2.35 16 35 H 0.02 1.11 7.91 -2.39 -0.02 1.09 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.03 1.41 8.02 -2.39 -0.02 1.39 16 38 H 0.06 2.00 7.59 -2.39 -0.02 1.98 16 39 H 0.26 15.38 6.89 -92.71 -0.64 14.74 16 40 H 0.02 1.03 7.34 -2.39 -0.02 1.01 16 41 H 0.03 1.40 6.97 -2.39 -0.02 1.38 16 42 H 0.08 2.70 4.35 -2.38 -0.01 2.69 16 43 H 0.10 2.74 7.72 -2.38 -0.02 2.73 16 44 H 0.13 3.11 6.74 -2.91 -0.02 3.09 16 45 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 46 H 0.17 1.32 8.06 -2.90 -0.02 1.30 16 47 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -75.20 373.07 3.96 -71.23 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.11 Total: 19.86 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.80 Total: 5.95 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -4.94 Total: -124.69 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.06 Total: -25.96 kcal Atomic # 14 Polarization: 51.54 SS G_CDS: 2.06 Total: 53.60 kcal Total: -75.20 3.96 -71.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989607661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.550 kcal (2) G-P(sol) polarization free energy of solvation -75.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds