Wall clock time and date at job start Tue Mar 31 2020 22:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39311 * 119.06289 * 2 1 4 4 C 1.38853 * 119.57991 * 180.25540 * 3 2 1 5 5 C 1.47906 * 121.11319 * 179.77996 * 4 3 2 6 6 O 1.21538 * 120.00087 * 227.49380 * 5 4 3 7 7 N 1.34785 * 119.99916 * 47.48928 * 5 4 3 8 8 C 1.47024 * 125.64555 * 354.81038 * 7 5 4 9 9 C 1.54321 * 107.26865 * 178.90681 * 8 7 5 10 10 H 1.09001 * 110.72462 * 96.34789 * 9 8 7 11 11 N 1.46506 * 110.72141 * 219.44658 * 9 8 7 12 12 C 1.36934 * 119.99570 * 273.54891 * 11 9 8 13 13 H 1.08002 * 120.00092 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99714 * 179.72504 * 12 11 9 15 15 N 1.31617 * 120.00286 * 0.26588 * 14 12 11 16 16 Si 1.86803 * 119.99734 * 180.27142 * 14 12 11 17 17 H 1.48498 * 109.47105 * 60.00106 * 16 14 12 18 18 H 1.48507 * 109.46689 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47150 * 299.99582 * 16 14 12 20 20 C 1.55166 * 102.94216 * 337.80559 * 9 8 7 21 21 C 1.47417 * 125.64670 * 174.77232 * 7 5 4 22 22 H 1.08998 * 110.37386 * 85.21412 * 21 7 5 23 23 C 1.53004 * 110.36689 * 322.99662 * 21 7 5 24 24 C 1.41822 * 117.77801 * 359.50688 * 4 3 2 25 25 C 1.40098 * 121.37484 * 180.27028 * 24 4 3 26 26 C 1.36243 * 119.64308 * 179.97438 * 25 24 4 27 27 C 1.39346 * 120.83904 * 0.02562 * 26 25 24 28 28 C 1.36063 * 121.04690 * 0.02562 * 27 26 25 29 29 C 1.40710 * 119.74324 * 359.96178 * 28 27 26 30 30 N 1.30969 * 119.05425 * 179.75307 * 2 1 3 31 31 H 1.08996 * 109.46934 * 270.25010 * 1 2 3 32 32 H 1.09002 * 109.46313 * 30.24896 * 1 2 3 33 33 H 1.09001 * 109.47076 * 150.25011 * 1 2 3 34 34 H 1.08007 * 120.20939 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.88300 * 59.48775 * 8 7 5 36 36 H 1.08995 * 110.00897 * 298.39039 * 8 7 5 37 37 H 0.97000 * 120.00213 * 93.54317 * 11 9 8 38 38 H 0.96996 * 120.00143 * 180.02562 * 15 14 12 39 39 H 1.08996 * 111.00200 * 153.57378 * 20 9 8 40 40 H 1.08994 * 111.00443 * 277.42721 * 20 9 8 41 41 H 1.09004 * 109.46595 * 61.46407 * 23 21 7 42 42 H 1.09001 * 109.47166 * 181.45319 * 23 21 7 43 43 H 1.08997 * 109.47254 * 301.45679 * 23 21 7 44 44 H 1.07999 * 120.17694 * 359.96681 * 25 24 4 45 45 H 1.08006 * 119.58005 * 180.02562 * 26 25 24 46 46 H 1.08004 * 119.47697 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.12903 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5723 1.2302 -0.0054 5 6 4.3251 2.5034 -0.0104 6 8 5.2435 2.6632 -0.7902 7 7 3.9924 3.4864 0.8497 8 6 2.8433 3.4700 1.7667 9 6 2.8797 4.7870 2.5702 10 1 2.2247 5.5324 2.1189 11 7 2.5086 4.5519 3.9679 12 6 1.1903 4.5660 4.3378 13 1 0.4241 4.7507 3.5994 14 6 0.8383 4.3376 5.6610 15 7 1.7720 4.1127 6.5610 16 14 -0.9606 4.3492 6.1642 17 1 -1.6919 3.2982 5.4120 18 1 -1.0688 4.0806 7.6208 19 1 -1.5511 5.6773 5.8601 20 6 4.3660 5.2192 2.4621 21 6 4.7211 4.7555 1.0273 22 1 4.3864 5.4908 0.2955 23 6 6.2285 4.5265 0.8995 24 6 4.2446 -0.0185 0.0001 25 6 5.6435 -0.0937 0.0009 26 6 6.2528 -1.3123 0.0067 27 6 5.5021 -2.4863 0.0114 28 6 4.1420 -2.4495 0.0098 29 6 3.4772 -1.2094 0.0040 30 7 2.1431 -1.1449 0.0049 31 1 -0.3633 0.0045 1.0276 32 1 -0.3632 0.8878 -0.5177 33 1 -0.3633 -0.8922 -0.5099 34 1 1.6319 2.1461 0.0004 35 1 2.9219 2.6199 2.4444 36 1 1.9146 3.4073 1.1997 37 1 3.1967 4.3863 4.6311 38 1 1.5260 3.9528 7.4855 39 1 4.4666 6.3001 2.5595 40 1 4.9777 4.7031 3.2021 41 1 6.4552 4.1481 -0.0973 42 1 6.7538 5.4682 1.0587 43 1 6.5502 3.8003 1.6459 44 1 6.2358 0.8094 -0.0033 45 1 7.3314 -1.3691 0.0078 46 1 6.0080 -3.4406 0.0156 47 1 3.5749 -3.3686 0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989751665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:36 Heat of formation + Delta-G solvation = 38.393452 kcal Electronic energy + Delta-G solvation = -29607.168676 eV Core-core repulsion = 25755.065769 eV Total energy + Delta-G solvation = -3852.102906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22190 -39.78410 -37.52276 -37.37882 -34.27165 -33.74042 -32.08593 -31.70254 -31.43813 -29.94321 -28.51135 -27.86452 -25.68700 -24.71519 -23.83385 -23.30130 -22.59167 -21.30917 -20.38480 -18.99157 -18.22588 -17.60305 -17.26941 -16.77625 -16.16405 -15.71372 -15.28388 -14.88538 -14.76631 -14.55820 -14.09710 -13.99412 -13.76598 -13.72453 -13.40998 -13.13976 -13.09851 -13.01084 -12.72126 -12.34375 -12.19200 -12.02249 -11.86112 -11.66756 -11.47834 -11.43020 -11.29486 -11.10857 -10.85052 -10.76388 -10.53233 -10.41307 -10.15029 -10.01987 -9.81375 -9.37100 -9.05551 -8.75637 -8.49463 -8.29850 -7.17054 -5.90759 -3.22465 0.13087 0.71760 1.70361 2.64549 2.81752 3.07555 3.35748 3.40680 3.41965 4.00718 4.05251 4.26763 4.48028 4.56328 4.61452 4.73838 4.91206 4.98220 5.01307 5.08697 5.13585 5.18631 5.28696 5.37621 5.39960 5.49462 5.55689 5.58987 5.65093 5.72466 5.73772 5.78069 5.84826 5.94618 5.99792 6.00048 6.05416 6.12283 6.23118 6.30089 6.32729 6.38264 6.42031 6.42968 6.57534 6.74095 6.76641 7.55368 7.61010 7.82921 8.13007 8.26250 9.38276 9.91128 10.25869 11.30987 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.003900 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.387790 B = 7177.696501 C = 8729.987261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.162 3.838 3 C -0.136 4.136 4 C -0.054 4.054 5 C 0.575 3.425 6 O -0.535 6.535 7 N -0.598 5.598 8 C 0.068 3.932 9 C 0.173 3.827 10 H 0.067 0.933 11 N -0.712 5.712 12 C -0.253 4.253 13 H 0.072 0.928 14 C -0.005 4.005 15 N -0.928 5.928 16 Si 0.908 3.092 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.284 1.284 20 C -0.136 4.136 21 C 0.137 3.863 22 H 0.077 0.923 23 C -0.165 4.165 24 C -0.074 4.074 25 C -0.085 4.085 26 C -0.121 4.121 27 C -0.099 4.099 28 C -0.097 4.097 29 C 0.133 3.867 30 N -0.468 5.468 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.387 0.613 38 H 0.258 0.742 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -7.278 -14.229 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.156 4.156 4 C -0.065 4.065 5 C 0.363 3.637 6 O -0.414 6.414 7 N -0.331 5.331 8 C -0.058 4.058 9 C 0.060 3.940 10 H 0.085 0.915 11 N -0.352 5.352 12 C -0.384 4.384 13 H 0.090 0.910 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.738 3.262 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.211 1.211 20 C -0.175 4.175 21 C 0.035 3.965 22 H 0.095 0.905 23 C -0.223 4.223 24 C -0.076 4.076 25 C -0.104 4.104 26 C -0.139 4.139 27 C -0.119 4.119 28 C -0.116 4.116 29 C 0.012 3.988 30 N -0.178 5.178 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.222 0.778 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.155 0.845 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.443 -8.048 -14.596 17.534 hybrid contribution -0.416 0.631 0.687 1.021 sum 5.027 -7.418 -13.909 16.545 Atomic orbital electron populations 1.20821 0.88010 1.03680 1.03972 1.21427 0.97358 0.87555 0.92722 1.22359 0.93432 1.00138 0.99709 1.20334 0.94013 0.93211 0.98970 1.17683 0.83268 0.82354 0.80435 1.90707 1.30442 1.80961 1.39242 1.48577 1.29236 1.17294 1.37978 1.23561 0.86581 1.03796 0.91855 1.21181 0.93131 0.92383 0.87267 0.91464 1.42375 1.06008 1.84735 1.02072 1.19185 0.83838 1.42272 0.93064 0.90962 1.24768 0.97611 1.01875 0.95982 1.69644 1.31484 1.54283 1.02109 0.86274 0.84540 0.77909 0.77478 1.21075 1.21611 1.21075 1.23153 0.98056 1.01675 0.94596 1.21919 0.92603 0.84611 0.97415 0.90535 1.22160 0.94169 1.01873 1.04104 1.18564 0.94893 0.92182 1.01986 1.21178 0.92905 0.99142 0.97175 1.20955 1.00401 0.92149 1.00364 1.20917 0.93707 0.98699 0.98580 1.20770 0.94194 0.96071 1.00525 1.18785 0.88877 0.92737 0.98439 1.67633 1.08640 1.28842 1.12662 0.89455 0.90287 0.90202 0.83570 0.90684 0.91986 0.77817 0.93213 0.89885 0.90390 0.89930 0.91920 0.92707 0.84457 0.85438 0.85254 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.14 36.01 0.37 -0.75 16 2 C 0.16 2.22 6.78 -82.56 -0.56 1.66 16 3 C -0.14 -1.92 8.25 -38.95 -0.32 -2.24 16 4 C -0.05 -0.85 5.46 -104.34 -0.57 -1.42 16 5 C 0.57 9.30 6.64 -12.30 -0.08 9.22 16 6 O -0.53 -9.37 13.18 5.33 0.07 -9.30 16 7 N -0.60 -9.23 3.24 -164.13 -0.53 -9.77 16 8 C 0.07 1.12 5.41 -3.06 -0.02 1.10 16 9 C 0.17 3.07 3.59 -66.09 -0.24 2.83 16 10 H 0.07 1.18 8.12 -51.93 -0.42 0.75 16 11 N -0.71 -16.31 5.18 -51.64 -0.27 -16.58 16 12 C -0.25 -6.47 9.98 -15.06 -0.15 -6.62 16 13 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 14 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 15 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 16 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.14 -2.03 6.11 -24.58 -0.15 -2.18 16 21 C 0.14 1.92 3.75 -66.42 -0.25 1.67 16 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 23 C -0.17 -2.18 8.77 37.16 0.33 -1.86 16 24 C -0.07 -1.14 5.76 -106.52 -0.61 -1.75 16 25 C -0.09 -1.20 9.21 -39.60 -0.36 -1.56 16 26 C -0.12 -1.36 9.96 -39.89 -0.40 -1.76 16 27 C -0.10 -1.03 9.94 -39.95 -0.40 -1.43 16 28 C -0.10 -1.18 9.98 -39.43 -0.39 -1.58 16 29 C 0.13 1.99 6.61 -84.87 -0.56 1.43 16 30 N -0.47 -7.03 10.19 -7.25 -0.07 -7.10 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.15 1.82 6.01 -52.48 -0.32 1.51 16 35 H 0.07 1.42 8.03 -51.93 -0.42 1.01 16 36 H 0.06 0.94 6.08 -51.93 -0.32 0.63 16 37 H 0.39 9.59 7.71 -40.82 -0.31 9.28 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.24 7.92 -51.93 -0.41 0.83 16 41 H 0.08 1.20 5.93 -51.93 -0.31 0.89 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.14 1.99 6.27 -52.49 -0.33 1.66 16 45 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 47 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -30.66 380.85 -10.43 -41.09 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.60 Total: 11.17 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -4.47 Total: -5.46 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.15 Total: -59.41 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.66 -10.43 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989751665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.486 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds