Wall clock time and date at job start Tue Mar 31 2020 22:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39311 * 119.06289 * 2 1 4 4 C 1.38853 * 119.57991 * 180.25540 * 3 2 1 5 5 C 1.47906 * 121.11319 * 179.77996 * 4 3 2 6 6 O 1.21538 * 120.00087 * 227.49380 * 5 4 3 7 7 N 1.34785 * 119.99916 * 47.48928 * 5 4 3 8 8 C 1.47024 * 125.64555 * 354.81038 * 7 5 4 9 9 C 1.54321 * 107.26865 * 178.90681 * 8 7 5 10 10 H 1.09001 * 110.72462 * 96.34789 * 9 8 7 11 11 N 1.46506 * 110.72141 * 219.44658 * 9 8 7 12 12 C 1.36934 * 119.99570 * 273.54891 * 11 9 8 13 13 H 1.08002 * 120.00092 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99714 * 179.72504 * 12 11 9 15 15 N 1.31617 * 120.00286 * 0.26588 * 14 12 11 16 16 Si 1.86803 * 119.99734 * 180.27142 * 14 12 11 17 17 H 1.48498 * 109.47105 * 60.00106 * 16 14 12 18 18 H 1.48507 * 109.46689 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47150 * 299.99582 * 16 14 12 20 20 C 1.55166 * 102.94216 * 337.80559 * 9 8 7 21 21 C 1.47417 * 125.64670 * 174.77232 * 7 5 4 22 22 H 1.08998 * 110.37386 * 85.21412 * 21 7 5 23 23 C 1.53004 * 110.36689 * 322.99662 * 21 7 5 24 24 C 1.41822 * 117.77801 * 359.50688 * 4 3 2 25 25 C 1.40098 * 121.37484 * 180.27028 * 24 4 3 26 26 C 1.36243 * 119.64308 * 179.97438 * 25 24 4 27 27 C 1.39346 * 120.83904 * 0.02562 * 26 25 24 28 28 C 1.36063 * 121.04690 * 0.02562 * 27 26 25 29 29 C 1.40710 * 119.74324 * 359.96178 * 28 27 26 30 30 N 1.30969 * 119.05425 * 179.75307 * 2 1 3 31 31 H 1.08996 * 109.46934 * 270.25010 * 1 2 3 32 32 H 1.09002 * 109.46313 * 30.24896 * 1 2 3 33 33 H 1.09001 * 109.47076 * 150.25011 * 1 2 3 34 34 H 1.08007 * 120.20939 * 0.02562 * 3 2 1 35 35 H 1.09001 * 109.88300 * 59.48775 * 8 7 5 36 36 H 1.08995 * 110.00897 * 298.39039 * 8 7 5 37 37 H 0.97000 * 120.00213 * 93.54317 * 11 9 8 38 38 H 0.96996 * 120.00143 * 180.02562 * 15 14 12 39 39 H 1.08996 * 111.00200 * 153.57378 * 20 9 8 40 40 H 1.08994 * 111.00443 * 277.42721 * 20 9 8 41 41 H 1.09004 * 109.46595 * 61.46407 * 23 21 7 42 42 H 1.09001 * 109.47166 * 181.45319 * 23 21 7 43 43 H 1.08997 * 109.47254 * 301.45679 * 23 21 7 44 44 H 1.07999 * 120.17694 * 359.96681 * 25 24 4 45 45 H 1.08006 * 119.58005 * 180.02562 * 26 25 24 46 46 H 1.08004 * 119.47697 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.12903 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5723 1.2302 -0.0054 5 6 4.3251 2.5034 -0.0104 6 8 5.2435 2.6632 -0.7902 7 7 3.9924 3.4864 0.8497 8 6 2.8433 3.4700 1.7667 9 6 2.8797 4.7870 2.5702 10 1 2.2247 5.5324 2.1189 11 7 2.5086 4.5519 3.9679 12 6 1.1903 4.5660 4.3378 13 1 0.4241 4.7507 3.5994 14 6 0.8383 4.3376 5.6610 15 7 1.7720 4.1127 6.5610 16 14 -0.9606 4.3492 6.1642 17 1 -1.6919 3.2982 5.4120 18 1 -1.0688 4.0806 7.6208 19 1 -1.5511 5.6773 5.8601 20 6 4.3660 5.2192 2.4621 21 6 4.7211 4.7555 1.0273 22 1 4.3864 5.4908 0.2955 23 6 6.2285 4.5265 0.8995 24 6 4.2446 -0.0185 0.0001 25 6 5.6435 -0.0937 0.0009 26 6 6.2528 -1.3123 0.0067 27 6 5.5021 -2.4863 0.0114 28 6 4.1420 -2.4495 0.0098 29 6 3.4772 -1.2094 0.0040 30 7 2.1431 -1.1449 0.0049 31 1 -0.3633 0.0045 1.0276 32 1 -0.3632 0.8878 -0.5177 33 1 -0.3633 -0.8922 -0.5099 34 1 1.6319 2.1461 0.0004 35 1 2.9219 2.6199 2.4444 36 1 1.9146 3.4073 1.1997 37 1 3.1967 4.3863 4.6311 38 1 1.5260 3.9528 7.4855 39 1 4.4666 6.3001 2.5595 40 1 4.9777 4.7031 3.2021 41 1 6.4552 4.1481 -0.0973 42 1 6.7538 5.4682 1.0587 43 1 6.5502 3.8003 1.6459 44 1 6.2358 0.8094 -0.0033 45 1 7.3314 -1.3691 0.0078 46 1 6.0080 -3.4406 0.0156 47 1 3.5749 -3.3686 0.0131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989751665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:35 Heat of formation + Delta-G solvation = 20.912028 kcal Electronic energy + Delta-G solvation = -29607.926727 eV Core-core repulsion = 25755.065769 eV Total energy + Delta-G solvation = -3852.860958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31251 -40.99130 -38.82929 -38.38465 -35.99424 -34.84973 -33.29853 -33.02854 -32.74869 -30.97338 -30.12121 -28.78412 -26.93489 -26.10352 -25.40021 -24.40912 -23.56681 -22.53863 -21.80245 -20.19566 -19.27727 -19.13443 -18.62612 -17.95364 -17.40630 -17.00555 -16.50311 -16.33401 -15.76159 -15.73273 -15.45328 -15.35038 -15.06166 -14.91249 -14.84142 -14.36622 -14.18220 -13.98940 -13.92787 -13.54047 -13.34161 -13.15766 -13.06675 -12.93757 -12.78739 -12.58946 -12.44683 -12.37390 -12.33169 -12.20542 -12.12858 -11.72295 -11.64817 -11.58266 -11.21545 -10.97116 -10.47309 -9.77330 -9.75479 -9.31849 -9.07497 -7.93924 -5.24358 -0.92399 -0.29807 0.64736 1.44583 1.51485 1.53020 1.58845 1.73702 1.93260 2.57379 2.97512 3.05844 3.13399 3.37079 3.52293 3.58725 3.70945 3.77150 3.81064 3.85308 4.01180 4.12072 4.16891 4.24755 4.32662 4.35263 4.40945 4.45694 4.49189 4.65304 4.69607 4.75147 4.76361 4.79397 4.83089 4.95867 5.00079 5.07357 5.11369 5.12938 5.18179 5.29596 5.31318 5.40616 5.44575 5.48428 5.55229 5.81636 6.25599 6.31784 6.77100 6.87600 7.34156 8.05109 8.28618 9.28901 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009862 B = 0.003900 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2838.387790 B = 7177.696501 C = 8729.987261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.149 3.851 3 C -0.137 4.137 4 C -0.079 4.079 5 C 0.577 3.423 6 O -0.551 6.551 7 N -0.597 5.597 8 C 0.083 3.917 9 C 0.166 3.834 10 H 0.079 0.921 11 N -0.724 5.724 12 C -0.243 4.243 13 H 0.085 0.915 14 C -0.069 4.069 15 N -0.969 5.969 16 Si 0.968 3.032 17 H -0.276 1.276 18 H -0.302 1.302 19 H -0.276 1.276 20 C -0.125 4.125 21 C 0.136 3.864 22 H 0.096 0.904 23 C -0.157 4.157 24 C -0.095 4.095 25 C -0.114 4.114 26 C -0.108 4.108 27 C -0.088 4.088 28 C -0.106 4.106 29 C 0.109 3.891 30 N -0.481 5.481 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.124 0.876 45 H 0.158 0.842 46 H 0.171 0.829 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.359 -7.694 -15.618 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.003 4.003 3 C -0.157 4.157 4 C -0.090 4.090 5 C 0.366 3.634 6 O -0.431 6.431 7 N -0.330 5.330 8 C -0.042 4.042 9 C 0.056 3.944 10 H 0.096 0.904 11 N -0.363 5.363 12 C -0.375 4.375 13 H 0.102 0.898 14 C -0.262 4.262 15 N -0.619 5.619 16 Si 0.797 3.203 17 H -0.202 1.202 18 H -0.228 1.228 19 H -0.202 1.202 20 C -0.163 4.163 21 C 0.034 3.966 22 H 0.113 0.887 23 C -0.215 4.215 24 C -0.097 4.097 25 C -0.132 4.132 26 C -0.126 4.126 27 C -0.107 4.107 28 C -0.125 4.125 29 C -0.013 4.013 30 N -0.191 5.191 31 H 0.106 0.894 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.177 0.823 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.142 0.858 45 H 0.176 0.824 46 H 0.188 0.812 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.276 -8.450 -16.048 18.888 hybrid contribution -0.254 0.708 1.025 1.271 sum 5.022 -7.743 -15.023 17.631 Atomic orbital electron populations 1.20902 0.85683 1.05162 1.04355 1.21951 0.98913 0.87164 0.92290 1.22547 0.93026 1.00952 0.99215 1.20457 0.94806 0.93178 1.00589 1.17779 0.83002 0.82531 0.80131 1.90688 1.31164 1.81289 1.39957 1.48570 1.29075 1.17818 1.37523 1.23181 0.87696 1.01735 0.91618 1.21398 0.95169 0.93001 0.84843 0.90360 1.42526 1.04922 1.84933 1.03945 1.19622 0.85219 1.39528 0.93102 0.89763 1.25515 1.01131 1.03120 0.96384 1.69804 1.33231 1.56879 1.01956 0.85302 0.80445 0.78273 0.76299 1.20201 1.22842 1.20155 1.23070 0.95647 1.02766 0.94832 1.22075 0.93076 0.84289 0.97116 0.88657 1.22080 0.93759 1.02782 1.02868 1.18801 0.95736 0.92427 1.02746 1.21205 0.92480 0.99989 0.99567 1.21376 1.02082 0.91390 0.97720 1.21366 0.93069 1.00046 0.96268 1.21110 0.95236 0.95704 1.00416 1.19217 0.89133 0.93665 0.99239 1.67693 1.08888 1.29417 1.13104 0.89417 0.88232 0.89347 0.82332 0.93565 0.90472 0.79317 0.94116 0.87858 0.91670 0.91159 0.89389 0.93944 0.85775 0.82421 0.81160 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.14 71.24 0.72 -1.31 16 2 C 0.15 4.07 6.78 42.95 0.29 4.37 16 3 C -0.14 -3.88 8.25 22.68 0.19 -3.70 16 4 C -0.08 -2.54 5.46 -19.68 -0.11 -2.65 16 5 C 0.58 18.91 6.64 86.80 0.58 19.48 16 6 O -0.55 -19.57 13.18 -3.83 -0.05 -19.62 16 7 N -0.60 -18.26 3.24 -791.47 -2.57 -20.83 16 8 C 0.08 2.73 5.41 86.73 0.47 3.20 16 9 C 0.17 5.75 3.59 46.18 0.17 5.92 16 10 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 11 N -0.72 -33.26 5.18 -317.31 -1.64 -34.90 16 12 C -0.24 -12.34 9.98 84.03 0.84 -11.50 16 13 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 14 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 15 N -0.97 -56.92 13.06 21.65 0.28 -56.64 16 16 Si 0.97 43.63 29.55 68.60 2.03 45.65 16 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.12 -3.57 6.11 31.99 0.20 -3.38 16 21 C 0.14 3.64 3.75 45.47 0.17 3.81 16 22 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 23 C -0.16 -4.00 8.77 71.98 0.63 -3.37 16 24 C -0.09 -2.99 5.76 -21.09 -0.12 -3.11 16 25 C -0.11 -3.22 9.21 22.26 0.20 -3.01 16 26 C -0.11 -2.25 9.96 22.07 0.22 -2.03 16 27 C -0.09 -1.60 9.94 22.03 0.22 -1.39 16 28 C -0.11 -2.44 9.98 22.37 0.22 -2.22 16 29 C 0.11 3.26 6.61 40.33 0.27 3.52 16 30 N -0.48 -14.43 10.19 -176.84 -1.80 -16.23 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.10 1.50 8.07 -2.39 -0.02 1.48 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.16 3.86 6.01 -2.91 -0.02 3.85 16 35 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 36 H 0.08 2.27 6.08 -2.39 -0.01 2.26 16 37 H 0.37 18.96 7.71 -92.71 -0.72 18.24 16 38 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 41 H 0.07 2.00 5.93 -2.39 -0.01 1.99 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.12 3.75 6.27 -2.91 -0.02 3.73 16 45 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 46 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -67.86 380.85 2.15 -65.71 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: 0.28 Total: 37.48 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.62 Total: -0.62 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -5.73 Total: -128.60 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -67.86 2.15 -65.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989751665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.620 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds