Wall clock time and date at job start Tue Mar 31 2020 22:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39314 * 119.06195 * 2 1 4 4 C 1.38857 * 119.57755 * 180.29930 * 3 2 1 5 5 C 1.47907 * 121.11036 * 179.69119 * 4 3 2 6 6 O 1.21548 * 119.99963 * 135.13790 * 5 4 3 7 7 N 1.34771 * 120.00162 * 315.13973 * 5 4 3 8 8 C 1.47022 * 125.64934 * 354.94460 * 7 5 4 9 9 C 1.54320 * 107.27148 * 181.01550 * 8 7 5 10 10 H 1.08999 * 110.72181 * 263.82358 * 9 8 7 11 11 N 1.46505 * 110.72030 * 140.55422 * 9 8 7 12 12 C 1.36943 * 119.99654 * 91.47943 * 11 9 8 13 13 H 1.07999 * 119.99879 * 359.97438 * 12 11 9 14 14 C 1.38810 * 119.99756 * 179.97438 * 12 11 9 15 15 N 1.31619 * 120.00056 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99949 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47150 * 90.00045 * 16 14 12 18 18 H 1.48500 * 109.46705 * 209.99903 * 16 14 12 19 19 H 1.48494 * 109.46993 * 329.99645 * 16 14 12 20 20 C 1.55153 * 102.94297 * 22.19305 * 9 8 7 21 21 C 1.47423 * 125.64943 * 174.89055 * 7 5 4 22 22 H 1.08995 * 110.46178 * 274.80247 * 21 7 5 23 23 C 1.53002 * 110.36659 * 37.07872 * 21 7 5 24 24 C 1.41827 * 117.77623 * 359.42302 * 4 3 2 25 25 C 1.40099 * 121.36485 * 180.25271 * 24 4 3 26 26 C 1.36248 * 119.64144 * 179.97438 * 25 24 4 27 27 C 1.39356 * 120.83250 * 0.03513 * 26 25 24 28 28 C 1.36061 * 121.05145 * 359.97438 * 27 26 25 29 29 C 1.40716 * 119.74228 * 359.97438 * 28 27 26 30 30 N 1.30966 * 119.05876 * 179.68471 * 2 1 3 31 31 H 1.09001 * 109.47254 * 270.31604 * 1 2 3 32 32 H 1.09007 * 109.46948 * 30.31463 * 1 2 3 33 33 H 1.08995 * 109.47417 * 150.31070 * 1 2 3 34 34 H 1.07998 * 120.21008 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.88372 * 61.59651 * 8 7 5 36 36 H 1.09007 * 109.88167 * 300.42734 * 8 7 5 37 37 H 0.96997 * 120.00029 * 271.47554 * 11 9 8 38 38 H 0.96999 * 120.00255 * 179.97438 * 15 14 12 39 39 H 1.08995 * 111.00801 * 82.57710 * 20 9 8 40 40 H 1.09005 * 111.00320 * 206.42256 * 20 9 8 41 41 H 1.09004 * 109.47479 * 175.40987 * 23 21 7 42 42 H 1.08997 * 109.47290 * 295.41123 * 23 21 7 43 43 H 1.09001 * 109.47230 * 55.41141 * 23 21 7 44 44 H 1.07997 * 120.17910 * 0.02562 * 25 24 4 45 45 H 1.08001 * 119.58602 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.47021 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.12970 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2302 -0.0063 5 6 4.3250 2.5034 -0.0133 6 8 5.2799 2.6489 0.7245 7 7 3.9521 3.5022 -0.8378 8 6 2.8891 3.4256 -1.8506 9 6 2.8376 4.7924 -2.5651 10 1 2.0696 5.4288 -2.1255 11 7 2.6084 4.6181 -4.0016 12 6 1.3314 4.6174 -4.4960 13 1 0.4932 4.7449 -3.8269 14 6 1.1142 4.4527 -5.8571 15 7 -0.1132 4.4516 -6.3323 16 14 2.5640 4.2329 -7.0144 17 1 2.8804 2.7876 -7.1424 18 1 2.2196 4.7844 -8.3494 19 1 3.7443 4.9518 -6.4712 20 6 4.2510 5.3757 -2.3016 21 6 4.5417 4.8529 -0.8727 22 1 4.0679 5.4948 -0.1302 23 6 6.0505 4.7817 -0.6285 24 6 4.2444 -0.0186 0.0001 25 6 5.6434 -0.0936 -0.0003 26 6 6.2529 -1.3122 0.0065 27 6 5.5021 -2.4862 0.0131 28 6 4.1420 -2.4495 0.0135 29 6 3.4771 -1.2094 0.0077 30 7 2.1431 -1.1448 0.0063 31 1 -0.3634 0.0057 1.0276 32 1 -0.3633 0.8872 -0.5188 33 1 -0.3634 -0.8927 -0.5090 34 1 1.6319 2.1461 -0.0004 35 1 1.9324 3.2226 -1.3693 36 1 3.1186 2.6396 -2.5702 37 1 3.3612 4.5032 -4.6024 38 1 -0.2650 4.3369 -7.2834 39 1 4.9749 4.9837 -3.0160 40 1 4.2342 6.4654 -2.3231 41 1 6.4836 5.7760 -0.7380 42 1 6.2384 4.4126 0.3797 43 1 6.5044 4.1059 -1.3533 44 1 6.2356 0.8095 -0.0052 45 1 7.3314 -1.3690 0.0066 46 1 6.0080 -3.4404 0.0180 47 1 3.5749 -3.3686 0.0183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989751666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:39 Heat of formation + Delta-G solvation = 43.115917 kcal Electronic energy + Delta-G solvation = -29609.714148 eV Core-core repulsion = 25757.816023 eV Total energy + Delta-G solvation = -3851.898125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27153 -39.86578 -37.61392 -37.43292 -34.42589 -33.78967 -32.11323 -31.79702 -31.56734 -29.99473 -29.02610 -27.88911 -25.77043 -24.77450 -23.70334 -23.21886 -22.61729 -21.31757 -20.55148 -19.03797 -18.25971 -17.83938 -17.55520 -16.83903 -16.30468 -15.68997 -15.32315 -14.90669 -14.82870 -14.58970 -14.18566 -14.04070 -13.85681 -13.82932 -13.44744 -13.18277 -13.13482 -12.98200 -12.69080 -12.37642 -12.27920 -12.19705 -12.01782 -11.74175 -11.60687 -11.50126 -11.46246 -11.26178 -10.93559 -10.80629 -10.57193 -10.50803 -10.18805 -10.05694 -9.72654 -9.40834 -9.09831 -8.79619 -8.56767 -8.33755 -7.48589 -5.91448 -3.30016 0.07960 0.67819 1.64902 2.61123 2.78325 2.99764 3.28039 3.31154 3.37310 3.96851 4.02479 4.21217 4.46349 4.51426 4.58035 4.70112 4.81604 4.89564 4.95909 4.99158 5.03301 5.15288 5.25175 5.28065 5.36469 5.43547 5.45886 5.50845 5.62134 5.63915 5.67138 5.70175 5.80448 5.83341 5.90432 5.91856 5.97761 6.03536 6.17885 6.20476 6.25643 6.29861 6.34242 6.39508 6.49117 6.64121 6.70511 7.51690 7.79552 7.81529 8.06977 8.26934 9.02881 9.75431 9.92854 11.25952 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.003865 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.200906 B = 7242.178644 C = 8285.419665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.162 3.838 3 C -0.133 4.133 4 C -0.057 4.057 5 C 0.576 3.424 6 O -0.533 6.533 7 N -0.600 5.600 8 C 0.068 3.932 9 C 0.179 3.821 10 H 0.079 0.921 11 N -0.736 5.736 12 C -0.257 4.257 13 H 0.093 0.907 14 C 0.013 3.987 15 N -0.927 5.927 16 Si 0.881 3.119 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.142 4.142 21 C 0.137 3.863 22 H 0.079 0.921 23 C -0.160 4.160 24 C -0.074 4.074 25 C -0.086 4.086 26 C -0.121 4.121 27 C -0.099 4.099 28 C -0.097 4.097 29 C 0.133 3.867 30 N -0.467 5.467 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.364 0.636 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.139 0.861 45 H 0.127 0.873 46 H 0.129 0.871 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 -7.899 14.628 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.009 3.991 3 C -0.154 4.154 4 C -0.068 4.068 5 C 0.364 3.636 6 O -0.411 6.411 7 N -0.333 5.333 8 C -0.058 4.058 9 C 0.067 3.933 10 H 0.097 0.903 11 N -0.377 5.377 12 C -0.386 4.386 13 H 0.111 0.889 14 C -0.184 4.184 15 N -0.573 5.573 16 Si 0.711 3.289 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.202 1.202 20 C -0.180 4.180 21 C 0.034 3.966 22 H 0.097 0.903 23 C -0.218 4.218 24 C -0.076 4.076 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.119 4.119 28 C -0.115 4.115 29 C 0.011 3.989 30 N -0.177 5.177 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.198 0.802 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.072 0.928 44 H 0.157 0.843 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.084 -8.675 14.976 19.546 hybrid contribution 1.304 0.516 -1.083 1.772 sum 10.388 -8.159 13.893 19.170 Atomic orbital electron populations 1.20832 0.87894 1.04488 1.03355 1.21448 0.97422 0.87505 0.92684 1.22360 0.93373 1.00157 0.99473 1.20331 0.93976 0.93159 0.99361 1.17689 0.83451 0.82351 0.80133 1.90713 1.27444 1.81279 1.41690 1.48549 1.36935 1.12047 1.35788 1.23481 0.89143 1.03214 0.89960 1.21136 0.94638 0.91831 0.85721 0.90300 1.42731 1.05821 1.87747 1.01381 1.19065 0.83515 1.43508 0.92532 0.88891 1.24664 0.95887 1.01223 0.96609 1.69688 1.18403 1.55829 1.13395 0.86614 0.82850 0.78098 0.81342 1.20972 1.21508 1.20219 1.23233 0.98686 1.01375 0.94756 1.21935 0.94602 0.82345 0.97719 0.90343 1.22156 0.93956 1.01582 1.04104 1.18579 0.94904 0.92210 1.01949 1.21219 0.92938 0.99191 0.97140 1.20967 1.00396 0.92167 1.00366 1.20923 0.93717 0.98707 0.98575 1.20777 0.94190 0.96096 1.00485 1.18794 0.88888 0.92749 0.98457 1.67638 1.08626 1.28887 1.12505 0.90026 0.89762 0.89961 0.83492 0.91386 0.90861 0.80205 0.92824 0.90704 0.89645 0.92172 0.89948 0.92763 0.84288 0.85464 0.85259 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.14 36.00 0.36 -0.73 16 2 C 0.16 2.15 6.78 -82.56 -0.56 1.59 16 3 C -0.13 -1.80 8.16 -38.95 -0.32 -2.12 16 4 C -0.06 -0.86 5.43 -104.34 -0.57 -1.43 16 5 C 0.58 8.91 6.82 -12.30 -0.08 8.82 16 6 O -0.53 -8.94 12.76 5.32 0.07 -8.87 16 7 N -0.60 -8.76 3.24 -164.13 -0.53 -9.30 16 8 C 0.07 1.06 5.69 -3.07 -0.02 1.04 16 9 C 0.18 3.00 3.61 -66.10 -0.24 2.77 16 10 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 11 N -0.74 -15.77 4.95 -51.65 -0.26 -16.02 16 12 C -0.26 -6.66 10.44 -15.06 -0.16 -6.82 16 13 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 14 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 15 N -0.93 -27.67 13.97 55.49 0.78 -26.90 16 16 Si 0.88 21.06 27.73 -169.99 -4.71 16.34 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 20 C -0.14 -1.96 6.13 -24.58 -0.15 -2.11 16 21 C 0.14 1.80 3.79 -66.42 -0.25 1.54 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 C -0.16 -2.01 8.52 37.16 0.32 -1.69 16 24 C -0.07 -1.10 5.76 -106.52 -0.61 -1.72 16 25 C -0.09 -1.17 9.19 -39.60 -0.36 -1.53 16 26 C -0.12 -1.32 9.96 -39.88 -0.40 -1.72 16 27 C -0.10 -1.00 9.94 -39.95 -0.40 -1.40 16 28 C -0.10 -1.15 9.98 -39.43 -0.39 -1.54 16 29 C 0.13 1.93 6.61 -84.87 -0.56 1.37 16 30 N -0.47 -6.82 10.19 -7.25 -0.07 -6.90 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.78 8.07 -51.92 -0.42 0.37 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.15 1.74 6.21 -52.49 -0.33 1.42 16 35 H 0.07 1.00 5.81 -51.93 -0.30 0.70 16 36 H 0.07 1.30 8.03 -51.92 -0.42 0.88 16 37 H 0.36 7.83 5.62 -40.82 -0.23 7.60 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 1.08 7.92 -51.93 -0.41 0.67 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.14 6.09 -51.93 -0.32 0.83 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.14 1.96 6.15 -52.49 -0.32 1.64 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -31.49 377.43 -10.09 -41.58 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.56 Total: 9.78 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -4.48 Total: -5.41 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.09 Total: -59.11 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.07 Total: -8.87 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.49 -10.09 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989751666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.698 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds