Wall clock time and date at job start Tue Mar 31 2020 22:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39314 * 119.06195 * 2 1 4 4 C 1.38857 * 119.57755 * 180.29930 * 3 2 1 5 5 C 1.47907 * 121.11036 * 179.69119 * 4 3 2 6 6 O 1.21548 * 119.99963 * 135.13790 * 5 4 3 7 7 N 1.34771 * 120.00162 * 315.13973 * 5 4 3 8 8 C 1.47022 * 125.64934 * 354.94460 * 7 5 4 9 9 C 1.54320 * 107.27148 * 181.01550 * 8 7 5 10 10 H 1.08999 * 110.72181 * 263.82358 * 9 8 7 11 11 N 1.46505 * 110.72030 * 140.55422 * 9 8 7 12 12 C 1.36943 * 119.99654 * 91.47943 * 11 9 8 13 13 H 1.07999 * 119.99879 * 359.97438 * 12 11 9 14 14 C 1.38810 * 119.99756 * 179.97438 * 12 11 9 15 15 N 1.31619 * 120.00056 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99949 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47150 * 90.00045 * 16 14 12 18 18 H 1.48500 * 109.46705 * 209.99903 * 16 14 12 19 19 H 1.48494 * 109.46993 * 329.99645 * 16 14 12 20 20 C 1.55153 * 102.94297 * 22.19305 * 9 8 7 21 21 C 1.47423 * 125.64943 * 174.89055 * 7 5 4 22 22 H 1.08995 * 110.46178 * 274.80247 * 21 7 5 23 23 C 1.53002 * 110.36659 * 37.07872 * 21 7 5 24 24 C 1.41827 * 117.77623 * 359.42302 * 4 3 2 25 25 C 1.40099 * 121.36485 * 180.25271 * 24 4 3 26 26 C 1.36248 * 119.64144 * 179.97438 * 25 24 4 27 27 C 1.39356 * 120.83250 * 0.03513 * 26 25 24 28 28 C 1.36061 * 121.05145 * 359.97438 * 27 26 25 29 29 C 1.40716 * 119.74228 * 359.97438 * 28 27 26 30 30 N 1.30966 * 119.05876 * 179.68471 * 2 1 3 31 31 H 1.09001 * 109.47254 * 270.31604 * 1 2 3 32 32 H 1.09007 * 109.46948 * 30.31463 * 1 2 3 33 33 H 1.08995 * 109.47417 * 150.31070 * 1 2 3 34 34 H 1.07998 * 120.21008 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.88372 * 61.59651 * 8 7 5 36 36 H 1.09007 * 109.88167 * 300.42734 * 8 7 5 37 37 H 0.96997 * 120.00029 * 271.47554 * 11 9 8 38 38 H 0.96999 * 120.00255 * 179.97438 * 15 14 12 39 39 H 1.08995 * 111.00801 * 82.57710 * 20 9 8 40 40 H 1.09005 * 111.00320 * 206.42256 * 20 9 8 41 41 H 1.09004 * 109.47479 * 175.40987 * 23 21 7 42 42 H 1.08997 * 109.47290 * 295.41123 * 23 21 7 43 43 H 1.09001 * 109.47230 * 55.41141 * 23 21 7 44 44 H 1.07997 * 120.17910 * 0.02562 * 25 24 4 45 45 H 1.08001 * 119.58602 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.47021 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.12970 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2177 0.0000 4 6 3.5722 1.2302 -0.0063 5 6 4.3250 2.5034 -0.0133 6 8 5.2799 2.6489 0.7245 7 7 3.9521 3.5022 -0.8378 8 6 2.8891 3.4256 -1.8506 9 6 2.8376 4.7924 -2.5651 10 1 2.0696 5.4288 -2.1255 11 7 2.6084 4.6181 -4.0016 12 6 1.3314 4.6174 -4.4960 13 1 0.4932 4.7449 -3.8269 14 6 1.1142 4.4527 -5.8571 15 7 -0.1132 4.4516 -6.3323 16 14 2.5640 4.2329 -7.0144 17 1 2.8804 2.7876 -7.1424 18 1 2.2196 4.7844 -8.3494 19 1 3.7443 4.9518 -6.4712 20 6 4.2510 5.3757 -2.3016 21 6 4.5417 4.8529 -0.8727 22 1 4.0679 5.4948 -0.1302 23 6 6.0505 4.7817 -0.6285 24 6 4.2444 -0.0186 0.0001 25 6 5.6434 -0.0936 -0.0003 26 6 6.2529 -1.3122 0.0065 27 6 5.5021 -2.4862 0.0131 28 6 4.1420 -2.4495 0.0135 29 6 3.4771 -1.2094 0.0077 30 7 2.1431 -1.1448 0.0063 31 1 -0.3634 0.0057 1.0276 32 1 -0.3633 0.8872 -0.5188 33 1 -0.3634 -0.8927 -0.5090 34 1 1.6319 2.1461 -0.0004 35 1 1.9324 3.2226 -1.3693 36 1 3.1186 2.6396 -2.5702 37 1 3.3612 4.5032 -4.6024 38 1 -0.2650 4.3369 -7.2834 39 1 4.9749 4.9837 -3.0160 40 1 4.2342 6.4654 -2.3231 41 1 6.4836 5.7760 -0.7380 42 1 6.2384 4.4126 0.3797 43 1 6.5044 4.1059 -1.3533 44 1 6.2356 0.8095 -0.0052 45 1 7.3314 -1.3690 0.0066 46 1 6.0080 -3.4404 0.0180 47 1 3.5749 -3.3686 0.0183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989751666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:38 Heat of formation + Delta-G solvation = 24.580925 kcal Electronic energy + Delta-G solvation = -29610.517885 eV Core-core repulsion = 25757.816023 eV Total energy + Delta-G solvation = -3852.701862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.32039 -41.01348 -38.88060 -38.38865 -36.11564 -34.85412 -33.54622 -33.03029 -32.76071 -30.99216 -30.55853 -28.78536 -26.94021 -26.03130 -25.21658 -24.37464 -23.56004 -22.50649 -21.96663 -20.18722 -19.70830 -19.18245 -18.66389 -17.95525 -17.47694 -16.93709 -16.48051 -16.35666 -15.88965 -15.75705 -15.55069 -15.23683 -15.04950 -14.92969 -14.82926 -14.44558 -14.18599 -14.00205 -13.96362 -13.72055 -13.50915 -13.21904 -13.10820 -13.06225 -12.91893 -12.58852 -12.44546 -12.40090 -12.31049 -12.24221 -12.03071 -11.83343 -11.63444 -11.58434 -11.20743 -11.03093 -10.46655 -9.78789 -9.75036 -9.39326 -9.30747 -8.02324 -5.37378 -0.93733 -0.30127 0.63536 1.38209 1.39998 1.46827 1.47991 1.72103 1.92833 2.47642 2.97291 3.02905 3.12055 3.27326 3.50383 3.55701 3.59063 3.73604 3.75589 3.80210 4.01919 4.10120 4.12740 4.23846 4.31350 4.35232 4.38597 4.41373 4.44359 4.64162 4.68218 4.75117 4.75442 4.80079 4.82334 4.96265 5.00317 5.05778 5.08746 5.13562 5.18906 5.25889 5.31504 5.40957 5.44979 5.49309 5.77668 5.81544 6.20948 6.29944 6.77153 6.87699 7.06005 7.80183 7.97625 9.18224 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.003865 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.200906 B = 7242.178644 C = 8285.419665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.149 3.851 3 C -0.135 4.135 4 C -0.080 4.080 5 C 0.578 3.422 6 O -0.548 6.548 7 N -0.598 5.598 8 C 0.080 3.920 9 C 0.171 3.829 10 H 0.082 0.918 11 N -0.739 5.739 12 C -0.231 4.231 13 H 0.069 0.931 14 C -0.054 4.054 15 N -0.978 5.978 16 Si 0.942 3.058 17 H -0.286 1.286 18 H -0.298 1.298 19 H -0.249 1.249 20 C -0.129 4.129 21 C 0.135 3.865 22 H 0.096 0.904 23 C -0.152 4.152 24 C -0.094 4.094 25 C -0.113 4.113 26 C -0.109 4.109 27 C -0.088 4.088 28 C -0.107 4.107 29 C 0.109 3.891 30 N -0.481 5.481 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.366 0.634 38 H 0.257 0.743 39 H 0.072 0.928 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.042 0.958 44 H 0.127 0.873 45 H 0.158 0.842 46 H 0.170 0.830 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 -8.393 15.472 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.003 4.003 3 C -0.155 4.155 4 C -0.091 4.091 5 C 0.366 3.634 6 O -0.428 6.428 7 N -0.331 5.331 8 C -0.045 4.045 9 C 0.061 3.939 10 H 0.100 0.900 11 N -0.381 5.381 12 C -0.362 4.362 13 H 0.087 0.913 14 C -0.246 4.246 15 N -0.628 5.628 16 Si 0.770 3.230 17 H -0.213 1.213 18 H -0.224 1.224 19 H -0.173 1.173 20 C -0.167 4.167 21 C 0.033 3.967 22 H 0.114 0.886 23 C -0.209 4.209 24 C -0.096 4.096 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.108 4.108 28 C -0.125 4.125 29 C -0.013 4.013 30 N -0.191 5.191 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.200 0.800 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.145 0.855 45 H 0.175 0.825 46 H 0.187 0.813 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.235 -9.154 15.877 21.497 hybrid contribution 0.683 0.610 -1.208 1.516 sum 11.919 -8.544 14.669 20.742 Atomic orbital electron populations 1.20899 0.85836 1.04786 1.04673 1.21925 0.98827 0.87210 0.92349 1.22525 0.93046 1.00846 0.99088 1.20453 0.94653 0.93195 1.00766 1.17767 0.83204 0.82538 0.79867 1.90698 1.28140 1.81597 1.42377 1.48528 1.36652 1.12639 1.35260 1.23134 0.89908 1.01627 0.89850 1.21344 0.96841 0.92509 0.83239 0.89993 1.42708 1.04083 1.87902 1.03424 1.19062 0.84745 1.40383 0.92009 0.91314 1.25368 0.98198 1.02554 0.98480 1.69850 1.20777 1.58769 1.13386 0.85608 0.80693 0.77863 0.78814 1.21299 1.22444 1.17345 1.23164 0.96111 1.02549 0.94923 1.22113 0.95236 0.81652 0.97714 0.88647 1.22065 0.93368 1.02702 1.02803 1.18807 0.95734 0.92416 1.02674 1.21241 0.92477 1.00021 0.99395 1.21381 1.02055 0.91412 0.97780 1.21363 0.93058 1.00062 0.96272 1.21105 0.95235 0.95716 1.00470 1.19218 0.89092 0.93710 0.99248 1.67689 1.08948 1.29428 1.13022 0.88112 0.89091 0.89947 0.82370 0.90613 0.93007 0.80003 0.93383 0.90947 0.87478 0.89643 0.91344 0.93881 0.85511 0.82463 0.81257 0.83006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 10.14 71.23 0.72 -1.34 16 2 C 0.15 3.99 6.78 42.95 0.29 4.28 16 3 C -0.13 -3.68 8.16 22.68 0.19 -3.50 16 4 C -0.08 -2.43 5.43 -19.68 -0.11 -2.54 16 5 C 0.58 17.89 6.82 86.81 0.59 18.49 16 6 O -0.55 -18.47 12.76 -3.87 -0.05 -18.52 16 7 N -0.60 -17.01 3.24 -791.48 -2.57 -19.58 16 8 C 0.08 2.48 5.69 86.73 0.49 2.97 16 9 C 0.17 5.50 3.61 46.18 0.17 5.67 16 10 H 0.08 2.63 8.09 -2.39 -0.02 2.61 16 11 N -0.74 -30.88 4.95 -317.33 -1.57 -32.45 16 12 C -0.23 -12.03 10.44 84.03 0.88 -11.15 16 13 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 14 C -0.05 -2.99 5.50 84.86 0.47 -2.53 16 15 N -0.98 -59.84 13.97 21.65 0.30 -59.54 16 16 Si 0.94 43.44 27.73 68.60 1.90 45.35 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 19 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 20 C -0.13 -3.25 6.13 31.98 0.20 -3.05 16 21 C 0.13 3.27 3.79 45.47 0.17 3.44 16 22 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 23 C -0.15 -3.52 8.52 71.98 0.61 -2.90 16 24 C -0.09 -2.83 5.76 -21.09 -0.12 -2.96 16 25 C -0.11 -3.03 9.19 22.26 0.20 -2.83 16 26 C -0.11 -2.14 9.96 22.08 0.22 -1.92 16 27 C -0.09 -1.53 9.94 22.03 0.22 -1.31 16 28 C -0.11 -2.37 9.98 22.37 0.22 -2.15 16 29 C 0.11 3.15 6.61 40.33 0.27 3.41 16 30 N -0.48 -14.09 10.19 -176.85 -1.80 -15.89 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.64 8.07 -2.38 -0.02 1.62 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.16 3.74 6.21 -2.91 -0.02 3.73 16 35 H 0.08 2.20 5.81 -2.39 -0.01 2.19 16 36 H 0.05 1.84 8.03 -2.38 -0.02 1.82 16 37 H 0.37 15.04 5.62 -92.71 -0.52 14.52 16 38 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.07 1.90 7.92 -2.39 -0.02 1.88 16 40 H 0.11 2.28 8.14 -2.38 -0.02 2.27 16 41 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.07 1.82 6.09 -2.39 -0.01 1.80 16 43 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.13 3.64 6.15 -2.91 -0.02 3.63 16 45 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 46 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 47 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -69.94 377.43 2.32 -67.63 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.42 Total: 32.92 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 5.68 Total: 0.08 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.64 Total: -127.46 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.35 kcal Total: -69.94 2.32 -67.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989751666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.208 kcal (2) G-P(sol) polarization free energy of solvation -69.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds