Wall clock time and date at job start Tue Mar 31 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 110.88596 * 2 1 4 4 C 1.55127 * 111.19402 * 236.06760 * 2 1 3 5 5 N 1.47425 * 104.72327 * 279.19369 * 4 2 1 6 6 C 1.34775 * 125.65050 * 155.81572 * 5 4 2 7 7 O 1.21599 * 119.99790 * 4.54928 * 6 5 4 8 8 C 1.47437 * 119.99913 * 184.55209 * 6 5 4 9 9 C 1.38748 * 120.33044 * 312.93154 * 8 6 5 10 10 C 1.38869 * 120.71743 * 180.02562 * 9 8 6 11 11 C 1.36344 * 121.06507 * 359.97438 * 10 9 8 12 12 C 1.40438 * 120.08359 * 359.95381 * 11 10 9 13 13 C 1.40814 * 121.27188 * 180.02562 * 12 11 10 14 14 C 1.36636 * 118.15235 * 180.02562 * 13 12 11 15 15 C 1.39228 * 119.91304 * 359.97438 * 14 13 12 16 16 N 1.31228 * 121.69684 * 0.27895 * 15 14 13 17 17 C 1.33357 * 121.34667 * 359.44052 * 16 15 14 18 18 C 1.47026 * 108.69926 * 335.54838 * 5 4 2 19 19 C 1.54323 * 107.27310 * 1.29260 * 18 5 4 20 20 H 1.09009 * 110.71652 * 263.83016 * 19 18 5 21 21 N 1.46492 * 110.72509 * 140.73382 * 19 18 5 22 22 C 1.36935 * 120.00166 * 86.44712 * 21 19 18 23 23 H 1.07995 * 119.99968 * 0.02562 * 22 21 19 24 24 C 1.38817 * 120.00006 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99726 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00052 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47436 * 90.00115 * 26 24 22 28 28 H 1.48510 * 109.47305 * 210.00392 * 26 24 22 29 29 H 1.48506 * 109.47254 * 329.99816 * 26 24 22 30 30 H 1.09008 * 109.47318 * 296.11952 * 1 2 3 31 31 H 1.09003 * 109.47252 * 56.11503 * 1 2 3 32 32 H 1.09001 * 109.47599 * 176.11906 * 1 2 3 33 33 H 1.09007 * 109.47173 * 183.88284 * 3 2 1 34 34 H 1.09007 * 109.47313 * 303.87771 * 3 2 1 35 35 H 1.09004 * 109.47542 * 63.88107 * 3 2 1 36 36 H 1.08995 * 110.49619 * 160.34687 * 4 2 1 37 37 H 1.09000 * 110.34029 * 37.95355 * 4 2 1 38 38 H 1.07995 * 119.63802 * 359.97438 * 9 8 6 39 39 H 1.08001 * 119.46437 * 179.97438 * 10 9 8 40 40 H 1.07997 * 119.95791 * 179.97438 * 11 10 9 41 41 H 1.07996 * 120.91973 * 359.97438 * 13 12 11 42 42 H 1.08002 * 120.04013 * 179.97438 * 14 13 12 43 43 H 1.08006 * 119.15347 * 180.02562 * 15 14 13 44 44 H 1.09002 * 109.87829 * 120.70388 * 18 5 4 45 45 H 1.08998 * 109.88452 * 241.71762 * 18 5 4 46 46 H 0.97004 * 119.99781 * 266.45370 * 21 19 18 47 47 H 0.97001 * 119.99756 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0138 -2.2162 -0.7725 6 6 1.9470 -3.2835 -1.5928 7 8 2.0304 -3.1314 -2.7963 8 6 1.7728 -4.6354 -1.0308 9 6 2.5517 -5.0557 0.0378 10 6 2.3947 -6.3274 0.5730 11 6 1.4738 -7.1955 0.0657 12 6 0.6636 -6.8102 -1.0147 13 6 -0.2958 -7.6863 -1.5578 14 6 -1.0493 -7.2457 -2.6090 15 6 -0.8563 -5.9618 -3.1117 16 7 0.0425 -5.1509 -2.6051 17 6 0.8062 -5.5180 -1.5753 18 6 2.0285 -2.2643 0.6969 19 6 2.0861 -0.8074 1.2026 20 1 3.1133 -0.5154 1.4211 21 7 1.2376 -0.6349 2.3842 22 6 1.7369 -0.9034 3.6307 23 1 2.7562 -1.2420 3.7427 24 6 0.9327 -0.7405 4.7504 25 7 -0.3099 -0.3283 4.6139 26 14 1.6139 -1.1060 6.4509 27 1 2.2224 0.1252 7.0156 28 1 0.5140 -1.5657 7.3365 29 1 2.6469 -2.1684 6.3524 30 1 -0.3634 0.4524 0.9228 31 1 -0.3634 0.5730 -0.8531 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1629 1.4034 -0.0696 34 1 1.6697 1.9732 -0.8532 35 1 1.7823 1.9303 0.9227 36 1 3.1252 -0.5271 -1.3985 37 1 1.4764 -0.6457 -2.0857 38 1 3.2886 -4.3868 0.4572 39 1 3.0121 -6.6337 1.4045 40 1 1.3671 -8.1805 0.4956 41 1 -0.4315 -8.6792 -1.1552 42 1 -1.7937 -7.8926 -3.0493 43 1 -1.4590 -5.6260 -3.9426 44 1 1.1218 -2.7475 1.0610 45 1 2.9049 -2.8135 1.0411 46 1 0.3221 -0.3306 2.2837 47 1 -0.8717 -0.2141 5.3963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996012906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:50 Heat of formation + Delta-G solvation = 23.441055 kcal Electronic energy + Delta-G solvation = -29751.868686 eV Core-core repulsion = 25899.117395 eV Total energy + Delta-G solvation = -3852.751291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07877 -41.07832 -39.21195 -37.93356 -35.85088 -34.78071 -34.26454 -32.66516 -31.57917 -31.27094 -29.19157 -28.33940 -27.61811 -25.93527 -25.41391 -24.51113 -24.08359 -22.69906 -20.61555 -20.08860 -19.38363 -19.12820 -18.29333 -17.89289 -17.44472 -17.03923 -16.49682 -16.33117 -15.77169 -15.67336 -15.52543 -15.21959 -15.18087 -14.69282 -14.64995 -14.33337 -14.18962 -13.92044 -13.80964 -13.66804 -13.38160 -13.03291 -12.93355 -12.86187 -12.80730 -12.75361 -12.55474 -12.29378 -12.11922 -12.07193 -11.89595 -11.54230 -11.48976 -11.33589 -11.13750 -10.89046 -10.34409 -9.82469 -9.68248 -9.28285 -9.02186 -7.91327 -5.20656 -0.78659 -0.19394 0.77852 1.51662 1.52276 1.60397 1.62781 1.87091 2.10820 2.59279 3.08876 3.23819 3.31831 3.39718 3.58721 3.70944 3.79387 3.80423 3.84241 3.95525 4.02744 4.10280 4.16739 4.28007 4.35681 4.40774 4.42368 4.47628 4.60143 4.69126 4.75960 4.80686 4.83939 4.89273 4.98321 4.99711 5.05557 5.06262 5.14048 5.20231 5.21300 5.28691 5.34525 5.39478 5.50118 5.54693 5.57396 5.81777 6.29365 6.44635 6.97898 7.09155 7.37763 8.09862 8.34701 9.32003 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.003823 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.241345 B = 7321.462054 C = 8794.032881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.123 4.123 4 C 0.122 3.878 5 N -0.608 5.608 6 C 0.577 3.423 7 O -0.565 6.565 8 C -0.143 4.143 9 C -0.060 4.060 10 C -0.129 4.129 11 C -0.062 4.062 12 C -0.129 4.129 13 C -0.048 4.048 14 C -0.175 4.175 15 C 0.123 3.877 16 N -0.515 5.515 17 C 0.131 3.869 18 C 0.089 3.911 19 C 0.175 3.825 20 H 0.074 0.926 21 N -0.721 5.721 22 C -0.239 4.239 23 H 0.082 0.918 24 C -0.069 4.069 25 N -0.969 5.969 26 Si 0.968 3.032 27 H -0.290 1.290 28 H -0.301 1.301 29 H -0.265 1.265 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.177 0.823 41 H 0.184 0.816 42 H 0.179 0.821 43 H 0.177 0.823 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.379 0.621 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.833 -14.516 -11.622 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.079 4.079 3 C -0.180 4.180 4 C -0.001 4.001 5 N -0.340 5.340 6 C 0.367 3.633 7 O -0.444 6.444 8 C -0.146 4.146 9 C -0.081 4.081 10 C -0.147 4.147 11 C -0.080 4.080 12 C -0.131 4.131 13 C -0.074 4.074 14 C -0.194 4.194 15 C -0.049 4.049 16 N -0.224 5.224 17 C 0.009 3.991 18 C -0.037 4.037 19 C 0.064 3.936 20 H 0.092 0.908 21 N -0.362 5.362 22 C -0.371 4.371 23 H 0.100 0.900 24 C -0.262 4.262 25 N -0.619 5.619 26 Si 0.798 3.202 27 H -0.217 1.217 28 H -0.228 1.228 29 H -0.190 1.190 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.160 0.840 39 H 0.185 0.815 40 H 0.194 0.806 41 H 0.201 0.799 42 H 0.196 0.804 43 H 0.194 0.806 44 H 0.064 0.936 45 H 0.093 0.907 46 H 0.215 0.785 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.186 -13.642 -12.432 18.730 hybrid contribution -0.497 -0.458 1.268 1.437 sum 2.689 -14.101 -11.164 18.185 Atomic orbital electron populations 1.21545 0.94416 1.00517 1.01648 1.21969 0.95761 0.96453 0.93712 1.21609 1.01325 0.92955 1.02149 1.22403 1.01464 0.79158 0.97030 1.48414 1.71758 1.06298 1.07558 1.17943 0.75897 0.84191 0.85267 1.90711 1.51769 1.86356 1.15594 1.19789 1.00828 0.94132 0.99877 1.21780 0.96892 0.97768 0.91620 1.21239 0.99820 0.92431 1.01209 1.21640 0.92366 1.01263 0.92750 1.19169 1.00380 0.94188 0.99352 1.22006 0.91297 1.00100 0.93978 1.22303 1.01943 0.97114 0.98034 1.23623 0.92456 0.90988 0.97800 1.68033 1.06540 1.37450 1.10367 1.18796 0.94883 0.92407 0.93023 1.23119 1.00824 1.01832 0.77934 1.21396 0.95143 0.90621 0.86398 0.90813 1.42658 1.13235 1.79312 1.01032 1.19661 0.96877 1.35953 0.84615 0.89996 1.25485 0.96322 1.03013 1.01355 1.69820 1.07992 1.54726 1.29407 0.85220 0.76933 0.77871 0.80211 1.21709 1.22819 1.19001 0.92998 0.91112 0.95008 0.91099 0.90931 0.93161 0.89707 0.91299 0.83972 0.81517 0.80561 0.79907 0.80357 0.80566 0.93640 0.90656 0.78543 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 7.95 71.98 0.57 -3.77 16 2 C -0.08 -2.51 0.87 -50.71 -0.04 -2.56 16 3 C -0.12 -3.39 8.68 71.98 0.62 -2.77 16 4 C 0.12 3.87 5.83 86.93 0.51 4.38 16 5 N -0.61 -21.54 3.31 -815.21 -2.70 -24.24 16 6 C 0.58 22.46 7.15 86.67 0.62 23.08 16 7 O -0.56 -25.28 16.76 -4.03 -0.07 -25.35 16 8 C -0.14 -4.91 5.45 -19.86 -0.11 -5.02 16 9 C -0.06 -1.66 8.50 22.54 0.19 -1.46 16 10 C -0.13 -2.63 9.93 21.98 0.22 -2.42 16 11 C -0.06 -1.13 9.75 22.36 0.22 -0.91 16 12 C -0.13 -3.07 5.74 -21.29 -0.12 -3.20 16 13 C -0.05 -0.79 9.90 22.52 0.22 -0.56 16 14 C -0.17 -2.82 10.03 22.13 0.22 -2.60 16 15 C 0.12 2.94 11.15 85.02 0.95 3.89 16 16 N -0.52 -17.73 9.34 -187.96 -1.76 -19.49 16 17 C 0.13 4.33 6.59 40.61 0.27 4.60 16 18 C 0.09 3.17 5.07 86.73 0.44 3.61 16 19 C 0.18 6.54 2.84 46.18 0.13 6.67 16 20 H 0.07 2.66 8.02 -2.38 -0.02 2.64 16 21 N -0.72 -34.02 5.08 -317.34 -1.61 -35.63 16 22 C -0.24 -12.37 9.98 84.04 0.84 -11.53 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 25 N -0.97 -57.34 13.06 21.65 0.28 -57.06 16 26 Si 0.97 44.03 29.55 68.60 2.03 46.06 16 27 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 30 H 0.05 2.04 6.36 -2.38 -0.02 2.02 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.03 1.22 7.91 -2.39 -0.02 1.20 16 33 H 0.07 1.71 8.07 -2.38 -0.02 1.70 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.08 2.38 7.99 -2.39 -0.02 2.36 16 37 H 0.07 2.27 8.00 -2.39 -0.02 2.25 16 38 H 0.14 3.59 5.87 -2.91 -0.02 3.58 16 39 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 43 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.05 1.88 8.03 -2.39 -0.02 1.87 16 45 H 0.08 2.42 5.97 -2.39 -0.01 2.40 16 46 H 0.38 19.48 5.28 -92.70 -0.49 18.99 16 47 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -77.21 381.66 2.89 -74.33 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.50 Total: 35.28 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.21 Total: 6.11 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -5.78 Total: -136.42 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.07 Total: -25.35 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -77.21 2.89 -74.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996012906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.766 kcal (2) G-P(sol) polarization free energy of solvation -77.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds