Wall clock time and date at job start Tue Mar 31 2020 23:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 110.29298 * 2 1 4 4 C 1.54007 * 110.32678 * 122.13348 * 2 1 3 5 5 N 1.47490 * 107.24798 * 120.09999 * 4 2 1 6 6 C 1.34767 * 127.03144 * 154.61669 * 5 4 2 7 7 O 1.21542 * 120.00637 * 354.73192 * 6 5 4 8 8 C 1.47908 * 119.99679 * 174.73981 * 6 5 4 9 9 C 1.38889 * 121.11308 * 322.06756 * 8 6 5 10 10 C 1.39270 * 119.58067 * 180.02562 * 9 8 6 11 11 N 1.30998 * 121.88214 * 0.02562 * 10 9 8 12 12 C 1.33536 * 121.83035 * 359.97438 * 11 10 9 13 13 C 1.40712 * 120.97310 * 179.97438 * 12 11 10 14 14 C 1.36060 * 119.74203 * 180.02562 * 13 12 11 15 15 C 1.39348 * 121.05196 * 0.02562 * 14 13 12 16 16 C 1.36247 * 120.84122 * 359.97438 * 15 14 13 17 17 C 1.40105 * 119.64492 * 359.71861 * 16 15 14 18 18 C 1.48386 * 105.79183 * 334.78334 * 5 4 2 19 19 C 1.54618 * 110.32679 * 237.75151 * 2 1 3 20 20 H 1.09002 * 110.73992 * 21.47503 * 19 2 1 21 21 N 1.46497 * 110.73804 * 144.61958 * 19 2 1 22 22 C 1.36934 * 119.99862 * 204.99645 * 21 19 2 23 23 H 1.07995 * 120.00661 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99747 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99910 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00122 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47102 * 89.99772 * 26 24 22 28 28 H 1.48497 * 109.46934 * 209.99672 * 26 24 22 29 29 H 1.48499 * 109.47057 * 329.99940 * 26 24 22 30 30 H 1.09005 * 109.47422 * 299.32068 * 1 2 3 31 31 H 1.08996 * 109.47193 * 59.32070 * 1 2 3 32 32 H 1.09000 * 109.47808 * 179.32264 * 1 2 3 33 33 H 1.08993 * 109.47238 * 180.68294 * 3 2 1 34 34 H 1.09003 * 109.47040 * 300.67946 * 3 2 1 35 35 H 1.08994 * 109.47017 * 60.67821 * 3 2 1 36 36 H 1.08997 * 109.91405 * 239.56283 * 4 2 1 37 37 H 1.09006 * 109.91269 * 0.64528 * 4 2 1 38 38 H 1.07993 * 120.20936 * 0.02709 * 9 8 6 39 39 H 1.07993 * 119.05968 * 180.02562 * 10 9 8 40 40 H 1.08005 * 120.12604 * 359.97438 * 13 12 11 41 41 H 1.07994 * 119.47241 * 180.02562 * 14 13 12 42 42 H 1.08003 * 119.57904 * 179.97438 * 15 14 13 43 43 H 1.08004 * 120.17910 * 180.02562 * 16 15 14 44 44 H 1.08999 * 110.51994 * 280.62098 * 18 5 4 45 45 H 1.08997 * 110.83030 * 157.65748 * 18 5 4 46 46 H 0.96999 * 119.99831 * 25.00785 * 21 19 2 47 47 H 0.96999 * 120.00178 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 2.0649 -0.7681 1.2229 5 7 2.8793 -1.8877 0.7142 6 6 3.8885 -2.5128 1.3522 7 8 4.2737 -2.1019 2.4292 8 6 4.5274 -3.6987 0.7415 9 6 3.7784 -4.6396 0.0467 10 6 4.4129 -5.7447 -0.5151 11 7 5.7055 -5.9286 -0.4087 12 6 6.4882 -5.0660 0.2445 13 6 7.8748 -5.2816 0.3482 14 6 8.6487 -4.3866 1.0200 15 6 8.0905 -3.2548 1.6109 16 6 6.7520 -3.0132 1.5310 17 6 5.9259 -3.9104 0.8413 18 6 2.3603 -2.1796 -0.6449 19 6 2.0671 -0.7737 -1.2262 20 1 1.3116 -0.8270 -2.0102 21 7 3.2947 -0.1553 -1.7327 22 6 3.6546 -0.3213 -3.0435 23 1 3.0332 -0.9078 -3.7040 24 6 4.8176 0.2651 -3.5235 25 7 5.1633 0.1059 -4.7835 26 14 5.8921 1.2801 -2.3813 27 1 6.8982 0.3993 -1.7354 28 1 6.5865 2.3350 -3.1625 29 1 5.0458 1.9130 -1.3380 30 1 -0.3634 0.5033 0.8960 31 1 -0.3633 0.5243 -0.8838 32 1 -0.3635 -1.0275 -0.0121 33 1 3.1503 1.4194 -0.0122 34 1 1.6948 1.9576 -0.8839 35 1 1.7146 1.9503 0.8960 36 1 2.6807 -0.1092 1.8350 37 1 1.2329 -1.1524 1.8131 38 1 2.7107 -4.5150 -0.0572 39 1 3.8224 -6.4708 -1.0539 40 1 8.3229 -6.1546 -0.1031 41 1 9.7125 -4.5562 1.0966 42 1 8.7270 -2.5601 2.1389 43 1 6.3307 -2.1324 1.9926 44 1 1.4459 -2.7699 -0.5861 45 1 3.1111 -2.6946 -1.2442 46 1 3.8527 0.3717 -1.1396 47 1 5.9761 0.5153 -5.1189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996016801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:58 Heat of formation + Delta-G solvation = 49.589725 kcal Electronic energy + Delta-G solvation = -30388.200465 eV Core-core repulsion = 26536.583065 eV Total energy + Delta-G solvation = -3851.617400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09405 -39.86820 -38.04966 -37.06402 -34.16777 -33.73087 -33.04921 -31.14845 -30.56191 -30.05736 -28.42781 -26.96961 -26.70787 -24.62071 -23.79910 -23.48197 -22.54332 -21.49214 -19.60854 -19.05152 -18.19306 -17.69553 -17.38528 -16.89066 -16.15417 -15.73205 -15.18862 -14.81996 -14.61424 -14.38772 -14.29339 -14.08959 -13.91531 -13.73348 -13.61704 -13.27915 -13.01355 -12.67621 -12.53814 -12.37036 -12.14559 -11.86843 -11.72898 -11.62778 -11.49639 -11.39378 -11.31511 -11.02892 -10.73322 -10.57873 -10.44637 -10.31046 -10.21033 -10.06694 -9.63580 -9.36031 -9.14999 -8.77495 -8.53812 -8.22831 -7.36880 -5.87362 -3.23654 0.18947 0.81310 1.78010 2.75811 2.91073 3.15568 3.29637 3.34119 3.39932 4.13195 4.24832 4.34551 4.50231 4.65224 4.71513 4.76357 4.84117 4.89226 4.92322 5.10118 5.15915 5.23352 5.31621 5.40807 5.47884 5.50483 5.57160 5.59711 5.69572 5.73039 5.80568 5.81134 5.93882 5.98948 6.01786 6.05585 6.07212 6.13841 6.20403 6.30216 6.32085 6.39916 6.49172 6.51657 6.58602 6.66702 6.83863 7.60676 7.86136 7.87116 8.15636 8.31782 9.08827 9.81707 10.00088 11.30318 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.005171 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.547734 B = 5413.548436 C = 6634.776680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.092 4.092 3 C -0.129 4.129 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.578 3.422 7 O -0.540 6.540 8 C -0.054 4.054 9 C -0.139 4.139 10 C 0.130 3.870 11 N -0.462 5.462 12 C 0.127 3.873 13 C -0.096 4.096 14 C -0.099 4.099 15 C -0.118 4.118 16 C -0.088 4.088 17 C -0.065 4.065 18 C 0.062 3.938 19 C 0.183 3.817 20 H 0.083 0.917 21 N -0.735 5.735 22 C -0.251 4.251 23 H 0.093 0.907 24 C 0.013 3.987 25 N -0.927 5.927 26 Si 0.875 3.125 27 H -0.284 1.284 28 H -0.289 1.289 29 H -0.276 1.276 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.144 0.856 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.144 0.856 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.365 0.635 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -7.792 12.408 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 C -0.187 4.187 4 C -0.006 4.006 5 N -0.331 5.331 6 C 0.367 3.633 7 O -0.419 6.419 8 C -0.065 4.065 9 C -0.159 4.159 10 C -0.043 4.043 11 N -0.170 5.170 12 C 0.006 3.994 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.136 4.136 16 C -0.106 4.106 17 C -0.067 4.067 18 C -0.063 4.063 19 C 0.070 3.930 20 H 0.101 0.899 21 N -0.377 5.377 22 C -0.380 4.380 23 H 0.110 0.890 24 C -0.183 4.183 25 N -0.574 5.574 26 Si 0.705 3.295 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.202 1.202 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.162 0.838 39 H 0.183 0.817 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.161 0.839 44 H 0.086 0.914 45 H 0.109 0.891 46 H 0.200 0.800 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.679 -8.354 12.403 15.400 hybrid contribution 0.486 1.466 0.943 1.810 sum -3.193 -6.888 13.346 15.355 Atomic orbital electron populations 1.21800 0.93339 1.01747 1.02013 1.21837 0.95926 0.96374 0.95290 1.21748 1.01377 0.94216 1.01355 1.22192 0.94042 0.88155 0.96254 1.48620 1.32426 1.33854 1.18167 1.17632 0.78653 0.82615 0.84379 1.90732 1.62816 1.66464 1.21900 1.20245 0.93358 0.95382 0.97530 1.22468 1.01733 0.95110 0.96628 1.22875 0.90520 0.95494 0.95362 1.67777 1.06021 1.29017 1.14234 1.18817 0.94420 0.90536 0.95649 1.20773 0.90831 1.00313 0.99568 1.20929 1.00189 0.94003 0.96750 1.20997 0.95107 0.97661 0.99851 1.21357 0.93603 0.99127 0.96553 1.18596 0.92488 0.96319 0.99332 1.23860 0.98790 1.01646 0.82020 1.21280 0.89971 0.88906 0.92809 0.89896 1.42862 1.24314 1.60847 1.09698 1.19040 1.05929 1.27961 0.85096 0.88968 1.24622 0.97903 1.00138 0.95673 1.69682 1.25910 1.48564 1.13255 0.86726 0.81401 0.80733 0.80663 1.21020 1.21521 1.20221 0.92696 0.91856 0.92514 0.92369 0.91554 0.93372 0.90726 0.91501 0.83786 0.81744 0.84558 0.85224 0.85430 0.83880 0.91413 0.89069 0.80002 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.21 37.16 0.31 -1.09 16 2 C -0.09 -1.27 0.94 -153.14 -0.14 -1.42 16 3 C -0.13 -1.93 7.68 37.16 0.29 -1.64 16 4 C 0.12 1.63 6.30 -2.98 -0.02 1.61 16 5 N -0.60 -9.46 3.30 -170.63 -0.56 -10.03 16 6 C 0.58 10.14 7.24 -12.30 -0.09 10.05 16 7 O -0.54 -10.52 15.04 5.33 0.08 -10.44 16 8 C -0.05 -0.90 5.44 -104.34 -0.57 -1.47 16 9 C -0.14 -1.89 8.05 -38.96 -0.31 -2.20 16 10 C 0.13 1.70 11.14 -17.52 -0.20 1.50 16 11 N -0.46 -7.16 10.30 -11.01 -0.11 -7.28 16 12 C 0.13 2.07 6.61 -84.87 -0.56 1.51 16 13 C -0.10 -1.33 9.98 -39.43 -0.39 -1.72 16 14 C -0.10 -1.23 9.94 -39.95 -0.40 -1.62 16 15 C -0.12 -1.62 9.96 -39.89 -0.40 -2.02 16 16 C -0.09 -1.46 9.17 -39.60 -0.36 -1.82 16 17 C -0.06 -1.12 5.76 -106.52 -0.61 -1.73 16 18 C 0.06 0.93 5.03 -1.98 -0.01 0.92 16 19 C 0.18 3.05 3.15 -66.06 -0.21 2.84 16 20 H 0.08 1.37 7.80 -51.93 -0.41 0.96 16 21 N -0.73 -16.03 4.40 -51.62 -0.23 -16.26 16 22 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 23 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 24 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 25 N -0.93 -28.36 13.97 55.49 0.78 -27.59 16 26 Si 0.87 22.03 27.74 -169.99 -4.71 17.32 16 27 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.52 6.39 56.52 0.36 -6.16 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.02 6.00 -51.93 -0.31 0.71 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.13 7.55 -51.93 -0.39 0.74 16 37 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 38 H 0.14 1.57 6.58 -52.49 -0.35 1.23 16 39 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.14 1.59 8.06 -52.48 -0.42 1.16 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.14 2.52 5.89 -52.48 -0.31 2.21 16 44 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 45 H 0.09 1.57 6.57 -51.93 -0.34 1.23 16 46 H 0.36 8.24 3.51 -40.82 -0.14 8.10 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 374.74 15.07 5.65 5.65 Total: -1.00 -33.26 374.74 -9.51 -42.77 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -6.46 Total: 10.63 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -3.93 Total: -4.78 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.13 Total: -61.15 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.26 -9.51 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996016801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.364 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds