Wall clock time and date at job start Tue Mar 31 2020 23:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 110.29298 * 2 1 4 4 C 1.54007 * 110.32678 * 122.13348 * 2 1 3 5 5 N 1.47490 * 107.24798 * 120.09999 * 4 2 1 6 6 C 1.34767 * 127.03144 * 154.61669 * 5 4 2 7 7 O 1.21542 * 120.00637 * 354.73192 * 6 5 4 8 8 C 1.47908 * 119.99679 * 174.73981 * 6 5 4 9 9 C 1.38889 * 121.11308 * 322.06756 * 8 6 5 10 10 C 1.39270 * 119.58067 * 180.02562 * 9 8 6 11 11 N 1.30998 * 121.88214 * 0.02562 * 10 9 8 12 12 C 1.33536 * 121.83035 * 359.97438 * 11 10 9 13 13 C 1.40712 * 120.97310 * 179.97438 * 12 11 10 14 14 C 1.36060 * 119.74203 * 180.02562 * 13 12 11 15 15 C 1.39348 * 121.05196 * 0.02562 * 14 13 12 16 16 C 1.36247 * 120.84122 * 359.97438 * 15 14 13 17 17 C 1.40105 * 119.64492 * 359.71861 * 16 15 14 18 18 C 1.48386 * 105.79183 * 334.78334 * 5 4 2 19 19 C 1.54618 * 110.32679 * 237.75151 * 2 1 3 20 20 H 1.09002 * 110.73992 * 21.47503 * 19 2 1 21 21 N 1.46497 * 110.73804 * 144.61958 * 19 2 1 22 22 C 1.36934 * 119.99862 * 204.99645 * 21 19 2 23 23 H 1.07995 * 120.00661 * 0.02562 * 22 21 19 24 24 C 1.38816 * 119.99747 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99910 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 120.00122 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47102 * 89.99772 * 26 24 22 28 28 H 1.48497 * 109.46934 * 209.99672 * 26 24 22 29 29 H 1.48499 * 109.47057 * 329.99940 * 26 24 22 30 30 H 1.09005 * 109.47422 * 299.32068 * 1 2 3 31 31 H 1.08996 * 109.47193 * 59.32070 * 1 2 3 32 32 H 1.09000 * 109.47808 * 179.32264 * 1 2 3 33 33 H 1.08993 * 109.47238 * 180.68294 * 3 2 1 34 34 H 1.09003 * 109.47040 * 300.67946 * 3 2 1 35 35 H 1.08994 * 109.47017 * 60.67821 * 3 2 1 36 36 H 1.08997 * 109.91405 * 239.56283 * 4 2 1 37 37 H 1.09006 * 109.91269 * 0.64528 * 4 2 1 38 38 H 1.07993 * 120.20936 * 0.02709 * 9 8 6 39 39 H 1.07993 * 119.05968 * 180.02562 * 10 9 8 40 40 H 1.08005 * 120.12604 * 359.97438 * 13 12 11 41 41 H 1.07994 * 119.47241 * 180.02562 * 14 13 12 42 42 H 1.08003 * 119.57904 * 179.97438 * 15 14 13 43 43 H 1.08004 * 120.17910 * 180.02562 * 16 15 14 44 44 H 1.08999 * 110.51994 * 280.62098 * 18 5 4 45 45 H 1.08997 * 110.83030 * 157.65748 * 18 5 4 46 46 H 0.96999 * 119.99831 * 25.00785 * 21 19 2 47 47 H 0.96999 * 120.00178 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4350 0.0000 4 6 2.0649 -0.7681 1.2229 5 7 2.8793 -1.8877 0.7142 6 6 3.8885 -2.5128 1.3522 7 8 4.2737 -2.1019 2.4292 8 6 4.5274 -3.6987 0.7415 9 6 3.7784 -4.6396 0.0467 10 6 4.4129 -5.7447 -0.5151 11 7 5.7055 -5.9286 -0.4087 12 6 6.4882 -5.0660 0.2445 13 6 7.8748 -5.2816 0.3482 14 6 8.6487 -4.3866 1.0200 15 6 8.0905 -3.2548 1.6109 16 6 6.7520 -3.0132 1.5310 17 6 5.9259 -3.9104 0.8413 18 6 2.3603 -2.1796 -0.6449 19 6 2.0671 -0.7737 -1.2262 20 1 1.3116 -0.8270 -2.0102 21 7 3.2947 -0.1553 -1.7327 22 6 3.6546 -0.3213 -3.0435 23 1 3.0332 -0.9078 -3.7040 24 6 4.8176 0.2651 -3.5235 25 7 5.1633 0.1059 -4.7835 26 14 5.8921 1.2801 -2.3813 27 1 6.8982 0.3993 -1.7354 28 1 6.5865 2.3350 -3.1625 29 1 5.0458 1.9130 -1.3380 30 1 -0.3634 0.5033 0.8960 31 1 -0.3633 0.5243 -0.8838 32 1 -0.3635 -1.0275 -0.0121 33 1 3.1503 1.4194 -0.0122 34 1 1.6948 1.9576 -0.8839 35 1 1.7146 1.9503 0.8960 36 1 2.6807 -0.1092 1.8350 37 1 1.2329 -1.1524 1.8131 38 1 2.7107 -4.5150 -0.0572 39 1 3.8224 -6.4708 -1.0539 40 1 8.3229 -6.1546 -0.1031 41 1 9.7125 -4.5562 1.0966 42 1 8.7270 -2.5601 2.1389 43 1 6.3307 -2.1324 1.9926 44 1 1.4459 -2.7699 -0.5861 45 1 3.1111 -2.6946 -1.2442 46 1 3.8527 0.3717 -1.1396 47 1 5.9761 0.5153 -5.1189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996016801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:57 Heat of formation + Delta-G solvation = 28.671452 kcal Electronic energy + Delta-G solvation = -30389.107549 eV Core-core repulsion = 26536.583065 eV Total energy + Delta-G solvation = -3852.524484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.24199 -41.08098 -39.36093 -38.13008 -35.87828 -35.03995 -34.22457 -33.06027 -31.63239 -31.15604 -29.82702 -28.09966 -27.87497 -25.88042 -25.31073 -24.64290 -23.73154 -22.95016 -20.83704 -20.48561 -19.41220 -19.26495 -18.56063 -18.06270 -17.50167 -16.98281 -16.47088 -16.39449 -16.03719 -15.67417 -15.49248 -15.28543 -15.06978 -14.94912 -14.83866 -14.72238 -14.20121 -14.05118 -13.97143 -13.60189 -13.45318 -13.17997 -13.02453 -12.83707 -12.81891 -12.62652 -12.60700 -12.40001 -12.23503 -11.99766 -11.95162 -11.61191 -11.56081 -11.44353 -11.37527 -11.06220 -10.52402 -9.92833 -9.83560 -9.37749 -9.22020 -8.06476 -5.36254 -0.93451 -0.27255 0.62082 1.25088 1.29156 1.33376 1.50697 1.78502 1.99649 2.40122 3.01083 3.12685 3.24357 3.27793 3.49665 3.57028 3.63574 3.64087 3.76937 3.80262 3.99896 4.08524 4.12644 4.25738 4.32850 4.38624 4.45417 4.50287 4.54956 4.66945 4.73271 4.75874 4.81604 4.85013 4.92827 4.95832 4.99032 5.00779 5.12650 5.23929 5.27183 5.29456 5.38197 5.39893 5.43684 5.53099 5.76902 5.79449 6.19198 6.33292 6.76120 6.87767 7.04604 7.82337 7.98198 9.14769 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.005171 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.547734 B = 5413.548436 C = 6634.776680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.080 4.080 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.599 5.599 6 C 0.574 3.426 7 O -0.571 6.571 8 C -0.087 4.087 9 C -0.125 4.125 10 C 0.128 3.872 11 N -0.477 5.477 12 C 0.102 3.898 13 C -0.103 4.103 14 C -0.094 4.094 15 C -0.113 4.113 16 C -0.123 4.123 17 C -0.091 4.091 18 C 0.071 3.929 19 C 0.167 3.833 20 H 0.091 0.909 21 N -0.742 5.742 22 C -0.214 4.214 23 H 0.074 0.926 24 C -0.053 4.053 25 N -0.976 5.976 26 Si 0.926 3.074 27 H -0.297 1.297 28 H -0.294 1.294 29 H -0.256 1.256 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.174 0.826 39 H 0.207 0.793 40 H 0.157 0.843 41 H 0.170 0.830 42 H 0.152 0.848 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.068 0.932 46 H 0.361 0.639 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 -8.891 13.682 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.363 3.637 7 O -0.452 6.452 8 C -0.098 4.098 9 C -0.146 4.146 10 C -0.044 4.044 11 N -0.185 5.185 12 C -0.019 4.019 13 C -0.122 4.122 14 C -0.114 4.114 15 C -0.131 4.131 16 C -0.142 4.142 17 C -0.094 4.094 18 C -0.054 4.054 19 C 0.058 3.942 20 H 0.108 0.892 21 N -0.384 5.384 22 C -0.345 4.345 23 H 0.092 0.908 24 C -0.245 4.245 25 N -0.627 5.627 26 Si 0.756 3.244 27 H -0.224 1.224 28 H -0.221 1.221 29 H -0.181 1.181 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.191 0.809 39 H 0.224 0.776 40 H 0.175 0.825 41 H 0.188 0.812 42 H 0.170 0.830 43 H 0.140 0.860 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.195 0.805 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.473 -9.451 13.726 17.541 hybrid contribution 0.923 1.737 0.568 2.048 sum -4.550 -7.714 14.294 16.868 Atomic orbital electron populations 1.21779 0.90052 1.03396 1.03033 1.21790 0.98258 0.94918 0.93244 1.21741 0.99215 0.95460 1.02289 1.22365 0.94392 0.87617 0.96406 1.48697 1.32098 1.33977 1.18239 1.17852 0.78679 0.82989 0.84173 1.90699 1.63657 1.67524 1.23331 1.20389 0.93720 0.96246 0.99463 1.22830 1.02929 0.94087 0.94715 1.23609 0.90197 0.95936 0.94704 1.67844 1.07098 1.29073 1.14517 1.19192 0.95718 0.90643 0.96330 1.21158 0.90161 1.01289 0.99556 1.21346 1.02016 0.92727 0.95287 1.21379 0.94310 0.98387 0.98979 1.21350 0.95123 0.99241 0.98505 1.18872 0.93232 0.97111 1.00185 1.23794 0.99970 1.00490 0.81130 1.21658 0.88039 0.90168 0.94383 0.89156 1.42941 1.26083 1.61407 1.07968 1.19080 1.04241 1.24634 0.86541 0.90812 1.25195 0.99859 1.02643 0.96758 1.69815 1.26706 1.51131 1.15095 0.85861 0.79862 0.79272 0.79399 1.22419 1.22063 1.18118 0.90732 0.91897 0.90551 0.95637 0.92379 0.90735 0.92333 0.88403 0.80910 0.77612 0.82505 0.81242 0.83021 0.86001 0.86600 0.91371 0.80459 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.21 71.98 0.59 -1.51 16 2 C -0.08 -1.99 0.94 -51.29 -0.05 -2.04 16 3 C -0.13 -3.64 7.68 71.98 0.55 -3.09 16 4 C 0.11 2.93 6.30 86.53 0.55 3.48 16 5 N -0.60 -18.04 3.30 -812.03 -2.68 -20.72 16 6 C 0.57 20.20 7.24 86.81 0.63 20.82 16 7 O -0.57 -22.92 15.04 -3.85 -0.06 -22.98 16 8 C -0.09 -2.92 5.44 -19.68 -0.11 -3.02 16 9 C -0.13 -3.22 8.05 22.67 0.18 -3.04 16 10 C 0.13 3.11 11.14 85.07 0.95 4.06 16 11 N -0.48 -14.35 10.30 -188.74 -1.94 -16.30 16 12 C 0.10 3.33 6.61 40.34 0.27 3.59 16 13 C -0.10 -2.76 9.98 22.37 0.22 -2.54 16 14 C -0.09 -2.20 9.94 22.03 0.22 -1.98 16 15 C -0.11 -3.08 9.96 22.07 0.22 -2.86 16 16 C -0.12 -4.29 9.17 22.26 0.20 -4.08 16 17 C -0.09 -3.24 5.76 -21.09 -0.12 -3.37 16 18 C 0.07 1.94 5.03 86.68 0.44 2.38 16 19 C 0.17 5.26 3.15 46.21 0.15 5.40 16 20 H 0.09 2.75 7.80 -2.39 -0.02 2.73 16 21 N -0.74 -32.07 4.40 -317.22 -1.40 -33.47 16 22 C -0.21 -11.39 10.44 84.03 0.88 -10.52 16 23 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 24 C -0.05 -3.05 5.50 84.86 0.47 -2.59 16 25 N -0.98 -61.60 13.97 21.65 0.30 -61.30 16 26 Si 0.93 46.84 27.74 68.60 1.90 48.75 16 27 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 28 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 29 H -0.26 -11.90 6.39 99.48 0.64 -11.26 16 30 H 0.07 1.01 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.02 0.87 6.00 -2.39 -0.01 0.86 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.71 7.55 -2.39 -0.02 1.70 16 37 H 0.10 1.95 7.68 -2.38 -0.02 1.94 16 38 H 0.17 3.22 6.58 -2.91 -0.02 3.20 16 39 H 0.21 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 43 H 0.12 4.64 5.89 -2.91 -0.02 4.62 16 44 H 0.12 2.14 7.95 -2.39 -0.02 2.12 16 45 H 0.07 2.24 6.57 -2.39 -0.02 2.23 16 46 H 0.36 16.30 3.51 -92.71 -0.33 15.97 16 47 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -77.32 374.74 2.95 -74.36 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.60 Total: 32.55 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.23 Total: -0.90 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -5.72 Total: -131.79 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.06 Total: -22.98 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.75 kcal Total: -77.32 2.95 -74.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996016801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.036 kcal (2) G-P(sol) polarization free energy of solvation -77.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds