Wall clock time and date at job start Tue Mar 31 2020 23:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.29105 * 2 1 4 4 C 1.54008 * 110.32392 * 122.13484 * 2 1 3 5 5 N 1.47487 * 107.08406 * 117.58990 * 4 2 1 6 6 C 1.34774 * 127.02998 * 205.40623 * 5 4 2 7 7 O 1.21591 * 120.00502 * 355.46426 * 6 5 4 8 8 C 1.47555 * 119.99768 * 175.45636 * 6 5 4 9 9 C 1.38687 * 120.38708 * 43.25090 * 8 6 5 10 10 C 1.38975 * 120.53735 * 180.02562 * 9 8 6 11 11 C 1.36207 * 121.23679 * 359.97438 * 10 9 8 12 12 C 1.40707 * 120.20014 * 359.97438 * 11 10 9 13 13 N 1.33694 * 120.93828 * 180.02562 * 12 11 10 14 14 C 1.31068 * 121.33746 * 180.02562 * 13 12 11 15 15 C 1.39338 * 121.71015 * 0.02562 * 14 13 12 16 16 C 1.36675 * 119.86625 * 359.97438 * 15 14 13 17 17 C 1.40470 * 118.16976 * 359.76106 * 16 15 14 18 18 C 1.48116 * 105.93129 * 25.44346 * 5 4 2 19 19 C 1.54615 * 110.32857 * 237.85924 * 2 1 3 20 20 H 1.09001 * 110.73588 * 100.92366 * 19 2 1 21 21 N 1.46498 * 110.74217 * 337.60128 * 19 2 1 22 22 C 1.36935 * 120.00086 * 154.99815 * 21 19 2 23 23 H 1.07995 * 119.99956 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99872 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00138 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99889 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47207 * 90.00003 * 26 24 22 28 28 H 1.48500 * 109.47074 * 209.99479 * 26 24 22 29 29 H 1.48495 * 109.47314 * 329.99943 * 26 24 22 30 30 H 1.08997 * 109.46822 * 60.70593 * 1 2 3 31 31 H 1.09006 * 109.46821 * 180.69938 * 1 2 3 32 32 H 1.09000 * 109.47226 * 300.70053 * 1 2 3 33 33 H 1.09004 * 109.46691 * 59.29791 * 3 2 1 34 34 H 1.08996 * 109.47232 * 179.29822 * 3 2 1 35 35 H 1.09001 * 109.46636 * 299.29893 * 3 2 1 36 36 H 1.09008 * 109.91059 * 236.94886 * 4 2 1 37 37 H 1.08999 * 109.91428 * 358.22560 * 4 2 1 38 38 H 1.07997 * 119.73246 * 0.02562 * 9 8 6 39 39 H 1.08005 * 119.37897 * 179.97438 * 10 9 8 40 40 H 1.07997 * 119.89657 * 179.97438 * 11 10 9 41 41 H 1.08004 * 119.14057 * 179.97438 * 14 13 12 42 42 H 1.07995 * 120.06521 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.91225 * 180.02562 * 16 15 14 44 44 H 1.09000 * 110.66248 * 79.15261 * 18 5 4 45 45 H 1.09003 * 110.65967 * 202.26637 * 18 5 4 46 46 H 0.97000 * 119.99658 * 334.99816 * 21 19 2 47 47 H 0.97003 * 119.99845 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8277 -1.9217 0.7104 6 6 3.0625 -3.0867 1.3461 7 8 2.6962 -3.2366 2.4957 8 6 3.7640 -4.1804 0.6468 9 6 4.8800 -3.9131 -0.1320 10 6 5.5428 -4.9407 -0.7924 11 6 5.1195 -6.2317 -0.6949 12 6 3.9923 -6.5499 0.0849 13 7 3.5643 -7.8120 0.1913 14 6 2.5151 -8.1172 0.9151 15 6 1.7950 -7.1457 1.6072 16 6 2.1804 -5.8361 1.5400 17 6 3.3089 -5.5157 0.7674 18 6 3.2836 -1.5376 -0.6455 19 6 2.0672 -0.7713 -1.2276 20 1 2.3824 -0.0806 -2.0097 21 7 1.0597 -1.7063 -1.7345 22 6 1.0888 -2.0998 -3.0458 23 1 1.8544 -1.7205 -3.7064 24 6 0.1338 -2.9853 -3.5261 25 7 -0.7994 -3.4471 -2.7211 26 14 0.1732 -3.5214 -5.3151 27 1 1.0108 -4.7405 -5.4481 28 1 -1.2078 -3.8174 -5.7736 29 1 0.7481 -2.4329 -6.1455 30 1 -0.3633 0.5028 -0.8962 31 1 -0.3633 -1.0277 0.0125 32 1 -0.3634 0.5247 0.8836 33 1 1.6944 1.9578 0.8837 34 1 3.1504 1.4195 0.0126 35 1 1.7149 1.9502 -0.8962 36 1 2.7181 -0.1226 1.8103 37 1 1.2334 -1.1157 1.8359 38 1 5.2370 -2.8982 -0.2259 39 1 6.4098 -4.7113 -1.3942 40 1 5.6506 -7.0133 -1.2177 41 1 2.2000 -9.1485 0.9759 42 1 0.9345 -7.4270 2.1961 43 1 1.6348 -5.0693 2.0700 44 1 4.1554 -0.8858 -0.5879 45 1 3.5027 -2.4227 -1.2428 46 1 0.3719 -2.0466 -1.1412 47 1 -1.4670 -4.0656 -3.0569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996117314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:32 Heat of formation + Delta-G solvation = 25.230599 kcal Electronic energy + Delta-G solvation = -30404.312688 eV Core-core repulsion = 26551.638997 eV Total energy + Delta-G solvation = -3852.673691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.15269 -41.06111 -39.32037 -37.92346 -35.72113 -34.74410 -34.38501 -32.59699 -31.61672 -31.32783 -29.48114 -28.00797 -27.54848 -25.86963 -25.38408 -24.55319 -24.07260 -22.94408 -20.66465 -20.09146 -19.35268 -19.04280 -18.17030 -17.97872 -17.60287 -17.04741 -16.53013 -16.36211 -15.73103 -15.70204 -15.48227 -15.26475 -15.10724 -15.03317 -14.60367 -14.29533 -14.11271 -13.92587 -13.70838 -13.58048 -13.22845 -13.03810 -12.95576 -12.88942 -12.73968 -12.70598 -12.54787 -12.37214 -12.12317 -12.07594 -11.81195 -11.60247 -11.41679 -11.33516 -11.24415 -10.94758 -10.50076 -9.85738 -9.76711 -9.31831 -8.90929 -7.92287 -5.18953 -0.84060 -0.22216 0.67972 1.45590 1.46458 1.53271 1.54149 1.82153 2.12564 2.55867 3.04193 3.26287 3.31617 3.39769 3.60666 3.74672 3.76824 3.81380 3.84494 3.87735 3.96843 4.09605 4.14598 4.33599 4.37214 4.41364 4.46750 4.63287 4.66505 4.73381 4.75472 4.79645 4.87474 4.90730 4.95818 4.99614 5.03579 5.05900 5.17006 5.23132 5.26089 5.32922 5.34129 5.44920 5.50041 5.53256 5.62474 5.77024 6.28477 6.45324 6.80314 6.99195 7.36172 8.13201 8.34490 9.31002 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008307 B = 0.005450 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3369.776575 B = 5136.312880 C = 6857.206335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 C -0.124 4.124 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.573 3.427 7 O -0.581 6.581 8 C -0.125 4.125 9 C -0.070 4.070 10 C -0.099 4.099 11 C -0.081 4.081 12 C 0.098 3.902 13 N -0.492 5.492 14 C 0.128 3.872 15 C -0.170 4.170 16 C -0.077 4.077 17 C -0.089 4.089 18 C 0.067 3.933 19 C 0.164 3.836 20 H 0.086 0.914 21 N -0.722 5.722 22 C -0.228 4.228 23 H 0.084 0.916 24 C -0.074 4.074 25 N -0.969 5.969 26 Si 0.961 3.039 27 H -0.296 1.296 28 H -0.303 1.303 29 H -0.262 1.262 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.158 0.842 39 H 0.180 0.820 40 H 0.160 0.840 41 H 0.200 0.800 42 H 0.167 0.833 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.372 0.628 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.671 2.639 6.471 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.081 4.081 3 C -0.182 4.182 4 C -0.005 4.005 5 N -0.328 5.328 6 C 0.363 3.637 7 O -0.464 6.464 8 C -0.129 4.129 9 C -0.088 4.088 10 C -0.118 4.118 11 C -0.100 4.100 12 C -0.023 4.023 13 N -0.200 5.200 14 C -0.044 4.044 15 C -0.189 4.189 16 C -0.103 4.103 17 C -0.092 4.092 18 C -0.058 4.058 19 C 0.053 3.947 20 H 0.104 0.896 21 N -0.361 5.361 22 C -0.360 4.360 23 H 0.102 0.898 24 C -0.266 4.266 25 N -0.620 5.620 26 Si 0.791 3.209 27 H -0.224 1.224 28 H -0.231 1.231 29 H -0.187 1.187 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.176 0.824 39 H 0.198 0.802 40 H 0.177 0.823 41 H 0.216 0.784 42 H 0.184 0.816 43 H 0.145 0.855 44 H 0.127 0.873 45 H 0.091 0.909 46 H 0.206 0.794 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.069 1.927 6.411 14.684 hybrid contribution -1.621 -0.247 -0.131 1.645 sum 11.448 1.680 6.280 13.165 Atomic orbital electron populations 1.21595 0.94492 1.00159 1.01398 1.21771 0.95790 0.97004 0.93573 1.21773 1.01679 0.91869 1.02847 1.22285 0.95375 0.86456 0.96394 1.48603 1.51852 1.13968 1.18327 1.17970 0.79112 0.81361 0.85210 1.90696 1.55317 1.81832 1.18552 1.19869 0.99244 0.91932 1.01860 1.21820 0.92949 1.01665 0.92408 1.21264 1.00876 0.91036 0.98608 1.21298 0.93726 0.98556 0.96384 1.19188 0.96958 0.88499 0.97632 1.68079 1.15109 1.18729 1.18103 1.23602 0.89310 1.01636 0.89859 1.22291 1.02347 0.92791 1.01514 1.21784 0.94564 0.98454 0.95536 1.18795 0.97289 0.93723 0.99358 1.23841 0.99506 1.00804 0.81603 1.21689 0.88387 0.90599 0.94014 0.89625 1.42692 1.32625 1.52387 1.08422 1.19644 1.09064 1.19449 0.87858 0.89821 1.25435 0.98512 1.01495 1.01192 1.69830 1.18903 1.37308 1.35948 0.85316 0.75934 0.78267 0.81363 1.22352 1.23053 1.18664 0.93026 0.95661 0.91464 0.91062 0.90659 0.91881 0.89046 0.93022 0.82430 0.80243 0.82276 0.78360 0.81581 0.85529 0.87335 0.90910 0.79389 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 7.62 71.98 0.55 -3.32 16 2 C -0.08 -2.24 0.94 -51.29 -0.05 -2.29 16 3 C -0.12 -2.41 8.21 71.98 0.59 -1.82 16 4 C 0.12 3.47 6.27 86.53 0.54 4.01 16 5 N -0.60 -19.89 3.29 -812.77 -2.68 -22.56 16 6 C 0.57 21.86 7.05 86.70 0.61 22.47 16 7 O -0.58 -25.08 15.35 -4.00 -0.06 -25.14 16 8 C -0.13 -4.46 5.42 -19.89 -0.11 -4.57 16 9 C -0.07 -1.90 7.76 22.55 0.17 -1.72 16 10 C -0.10 -2.26 9.92 21.97 0.22 -2.05 16 11 C -0.08 -2.20 9.96 22.40 0.22 -1.98 16 12 C 0.10 3.36 6.60 40.27 0.27 3.62 16 13 N -0.49 -16.03 10.34 -188.68 -1.95 -17.98 16 14 C 0.13 3.56 11.15 85.07 0.95 4.51 16 15 C -0.17 -5.04 10.03 22.17 0.22 -4.82 16 16 C -0.08 -2.88 9.23 22.45 0.21 -2.68 16 17 C -0.09 -3.36 5.76 -21.10 -0.12 -3.48 16 18 C 0.07 1.99 5.17 86.79 0.45 2.44 16 19 C 0.16 5.50 3.16 46.26 0.15 5.64 16 20 H 0.09 2.69 7.80 -2.39 -0.02 2.67 16 21 N -0.72 -33.48 4.60 -316.95 -1.46 -34.93 16 22 C -0.23 -11.79 9.96 84.03 0.84 -10.95 16 23 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 25 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 26 Si 0.96 45.54 29.55 68.60 2.03 47.57 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.02 1.01 6.21 -2.38 -0.01 1.00 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 2.20 7.68 -2.38 -0.02 2.18 16 37 H 0.05 1.75 7.64 -2.39 -0.02 1.73 16 38 H 0.16 3.34 6.62 -2.91 -0.02 3.32 16 39 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.20 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.13 5.14 6.08 -2.91 -0.02 5.12 16 44 H 0.11 2.26 8.13 -2.39 -0.02 2.24 16 45 H 0.07 2.45 6.04 -2.39 -0.01 2.44 16 46 H 0.37 19.65 5.67 -92.71 -0.53 19.13 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -75.55 378.18 2.81 -72.74 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: 0.47 Total: 39.90 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 6.17 Total: -0.69 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -5.80 Total: -134.38 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.06 Total: -25.14 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.55 2.81 -72.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996117314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.968 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds