Wall clock time and date at job start Tue Mar 31 2020 23:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 110.65619 * 2 1 4 4 C 1.54940 * 110.73655 * 236.61233 * 2 1 3 5 5 N 1.48119 * 103.25356 * 204.28719 * 4 2 1 6 6 C 1.34776 * 127.03091 * 219.33590 * 5 4 2 7 7 O 1.21541 * 120.00171 * 359.97359 * 6 5 4 8 8 C 1.47951 * 119.99896 * 179.97438 * 6 5 4 9 9 N 1.32195 * 120.15739 * 5.48751 * 8 6 5 10 10 C 1.32028 * 122.68473 * 179.69376 * 9 8 6 11 11 C 1.36685 * 122.02479 * 0.59211 * 10 9 8 12 12 C 1.40534 * 118.84919 * 359.71497 * 11 10 9 13 13 C 1.40314 * 122.21916 * 179.97438 * 12 11 10 14 14 C 1.36207 * 119.45477 * 180.02562 * 13 12 11 15 15 C 1.39387 * 120.99703 * 359.97438 * 14 13 12 16 16 C 1.36255 * 121.08489 * 359.97438 * 15 14 13 17 17 C 1.40088 * 119.53926 * 0.02562 * 16 15 14 18 18 C 1.47482 * 105.93276 * 39.29015 * 5 4 2 19 19 C 1.54004 * 107.08344 * 334.55622 * 18 5 4 20 20 H 1.09005 * 110.32257 * 242.41422 * 19 18 5 21 21 N 1.46499 * 110.32458 * 120.19929 * 19 18 5 22 22 C 1.36940 * 120.00115 * 86.45418 * 21 19 18 23 23 H 1.08007 * 119.99904 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99946 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99911 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00091 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47009 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46875 * 119.99854 * 26 24 22 29 29 H 1.48498 * 109.47291 * 240.00292 * 26 24 22 30 30 H 1.09001 * 109.46909 * 296.80407 * 1 2 3 31 31 H 1.08995 * 109.47000 * 56.80577 * 1 2 3 32 32 H 1.08995 * 109.46948 * 176.80900 * 1 2 3 33 33 H 1.09003 * 109.46647 * 183.19274 * 3 2 1 34 34 H 1.08994 * 109.47267 * 303.19134 * 3 2 1 35 35 H 1.08998 * 109.46811 * 63.19389 * 3 2 1 36 36 H 1.09004 * 110.66441 * 322.72240 * 4 2 1 37 37 H 1.08997 * 110.66678 * 85.67871 * 4 2 1 38 38 H 1.08001 * 118.99385 * 180.27979 * 10 9 8 39 39 H 1.08001 * 120.57883 * 179.73228 * 11 10 9 40 40 H 1.07998 * 120.27853 * 359.97438 * 13 12 11 41 41 H 1.07997 * 119.50299 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.45699 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.22862 * 179.97438 * 16 15 14 44 44 H 1.08998 * 109.91204 * 215.19187 * 18 5 4 45 45 H 1.08998 * 109.91319 * 93.91921 * 18 5 4 46 46 H 0.96993 * 120.00026 * 266.44446 * 21 19 18 47 47 H 0.97004 * 119.99456 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 6 2.0787 -0.7974 -1.2099 5 7 3.4279 -1.2112 -0.7602 6 6 4.5538 -1.2496 -1.5001 7 8 4.5237 -0.9215 -2.6700 8 6 5.8264 -1.6910 -0.8881 9 7 5.8431 -2.1510 0.3511 10 6 6.9484 -2.5634 0.9438 11 6 8.1623 -2.5319 0.3164 12 6 8.2318 -2.0506 -1.0022 13 6 9.4402 -1.9866 -1.7124 14 6 9.4428 -1.5096 -2.9883 15 6 8.2636 -1.0850 -3.5982 16 6 7.0727 -1.1343 -2.9380 17 6 7.0309 -1.6190 -1.6243 18 6 3.2875 -1.5717 0.6630 19 6 2.0776 -0.7916 1.2100 20 1 2.3928 -0.1081 1.9984 21 7 1.0608 -1.7179 1.7145 22 6 1.1318 -2.1772 3.0026 23 1 1.9377 -1.8570 3.6465 24 6 0.1681 -3.0544 3.4807 25 7 -0.8136 -3.4450 2.6958 26 14 0.2653 -3.6817 5.2376 27 1 1.4552 -3.0971 5.9067 28 1 -0.9614 -3.2836 5.9738 29 1 0.3791 -5.1622 5.2291 30 1 -0.3633 0.4634 0.9173 31 1 -0.3633 0.5626 -0.8599 32 1 -0.3633 -1.0260 -0.0572 33 1 3.1581 1.4096 -0.0572 34 1 1.6716 1.9701 -0.8599 35 1 1.7643 1.9351 0.9172 36 1 1.4559 -1.6693 -1.4102 37 1 2.1430 -0.1613 -2.0926 38 1 6.8926 -2.9325 1.9573 39 1 9.0526 -2.8712 0.8249 40 1 10.3609 -2.3121 -1.2512 41 1 10.3724 -1.4604 -3.5358 42 1 8.2942 -0.7115 -4.6111 43 1 6.1675 -0.8014 -3.4238 44 1 4.1883 -1.2897 1.2080 45 1 3.1126 -2.6433 0.7590 46 1 0.3372 -2.0056 1.1362 47 1 -1.4869 -4.0583 3.0299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996202278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:40 Heat of formation + Delta-G solvation = 56.289041 kcal Electronic energy + Delta-G solvation = -29650.316942 eV Core-core repulsion = 25798.990047 eV Total energy + Delta-G solvation = -3851.326895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22254 -39.68483 -37.89757 -37.49580 -34.04798 -33.29332 -32.86918 -31.28659 -30.74227 -29.90055 -27.71843 -26.88266 -26.50888 -24.65051 -23.71649 -23.62563 -22.70946 -21.56906 -19.77695 -18.62527 -18.03091 -17.41963 -17.21110 -16.66648 -15.96434 -15.86133 -15.64336 -14.84003 -14.62736 -14.39491 -14.12654 -13.90615 -13.77094 -13.74297 -13.42873 -13.21706 -12.92805 -12.57294 -12.39741 -12.28882 -12.15361 -11.81974 -11.67041 -11.64838 -11.53371 -11.28560 -10.91106 -10.89312 -10.52587 -10.41797 -10.30184 -10.17732 -9.93870 -9.66636 -9.62192 -9.32865 -9.27286 -8.88978 -8.39011 -8.13965 -7.00076 -5.79667 -3.08473 -0.03302 0.74593 1.60270 2.65658 3.07368 3.18990 3.42025 3.48152 3.50057 4.01341 4.11304 4.40319 4.53380 4.57857 4.63341 4.73189 4.88674 4.95827 5.03717 5.16843 5.19070 5.26514 5.30266 5.53049 5.55491 5.66529 5.68955 5.81395 5.84986 5.87662 5.91176 5.96274 6.04453 6.12321 6.19225 6.25408 6.31202 6.34235 6.40114 6.44188 6.45716 6.58887 6.62179 6.71608 6.78412 6.93486 7.03108 7.67346 7.70167 7.84580 8.29158 8.39371 9.50911 10.06402 10.41337 11.42821 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003342 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.179906 B = 8377.223560 C = 9906.472768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.115 3.885 5 N -0.584 5.584 6 C 0.583 3.417 7 O -0.548 6.548 8 C 0.132 3.868 9 N -0.441 5.441 10 C 0.076 3.924 11 C -0.137 4.137 12 C -0.031 4.031 13 C -0.121 4.121 14 C -0.096 4.096 15 C -0.128 4.128 16 C -0.088 4.088 17 C -0.073 4.073 18 C 0.080 3.920 19 C 0.172 3.828 20 H 0.064 0.936 21 N -0.715 5.715 22 C -0.240 4.240 23 H 0.072 0.928 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.173 0.827 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.388 0.612 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.019 5.957 -9.615 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.186 4.186 4 C -0.007 4.007 5 N -0.313 5.313 6 C 0.370 3.630 7 O -0.428 6.428 8 C -0.020 4.020 9 N -0.153 5.153 10 C -0.070 4.070 11 C -0.157 4.157 12 C -0.036 4.036 13 C -0.139 4.139 14 C -0.115 4.115 15 C -0.146 4.146 16 C -0.106 4.106 17 C -0.076 4.076 18 C -0.045 4.045 19 C 0.060 3.940 20 H 0.081 0.919 21 N -0.357 5.357 22 C -0.371 4.371 23 H 0.090 0.910 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.205 1.205 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.179 0.821 39 H 0.159 0.841 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.190 0.810 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.225 0.775 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.340 5.984 -9.492 20.654 hybrid contribution 0.787 -0.754 0.562 1.226 sum 18.127 5.230 -8.930 20.873 Atomic orbital electron populations 1.21591 0.92808 1.02616 1.01225 1.21937 0.96614 0.94984 0.95554 1.21701 1.00428 0.94967 1.01516 1.22636 0.81908 0.98730 0.97410 1.48686 1.07366 1.61910 1.13378 1.17329 0.81927 0.78701 0.85026 1.90542 1.84648 1.51841 1.15783 1.21381 0.92999 0.97208 0.90442 1.67678 1.30796 1.07585 1.09213 1.22354 0.87408 0.96764 1.00485 1.22139 0.99867 0.99536 0.94192 1.18195 0.93366 0.97752 0.94291 1.20904 0.96509 1.01370 0.95089 1.21049 0.98528 0.96949 0.95002 1.21093 0.92455 1.00508 1.00572 1.22200 1.00573 0.94998 0.92875 1.18696 0.92464 1.00606 0.95860 1.23708 1.01001 1.01542 0.78284 1.21196 0.88837 0.90962 0.92976 0.91854 1.42635 1.28309 1.52395 1.12404 1.19292 1.07932 1.21148 0.88689 0.91035 1.24722 0.97592 1.00325 0.98059 1.69664 1.15269 1.37765 1.35243 0.86146 0.77178 0.78391 0.84626 1.20533 1.21958 1.21944 0.91679 0.93751 0.91391 0.93133 0.92934 0.92300 0.90550 0.90305 0.82133 0.84137 0.85134 0.85699 0.85546 0.81014 0.89579 0.90293 0.77549 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 7.82 37.16 0.29 -1.73 16 2 C -0.09 -1.43 0.93 -152.63 -0.14 -1.58 16 3 C -0.13 -1.81 8.49 37.16 0.32 -1.49 16 4 C 0.12 1.87 5.98 -2.13 -0.01 1.86 16 5 N -0.58 -10.04 3.20 -170.84 -0.55 -10.59 16 6 C 0.58 10.07 7.85 -12.28 -0.10 9.97 16 7 O -0.55 -9.87 13.65 5.33 0.07 -9.80 16 8 C 0.13 2.10 6.78 -82.55 -0.56 1.54 16 9 N -0.44 -6.79 6.79 -9.81 -0.07 -6.86 16 10 C 0.08 0.92 11.06 -18.03 -0.20 0.72 16 11 C -0.14 -1.44 9.88 -39.28 -0.39 -1.82 16 12 C -0.03 -0.37 5.75 -106.82 -0.61 -0.98 16 13 C -0.12 -1.13 9.82 -39.53 -0.39 -1.52 16 14 C -0.10 -0.85 9.95 -39.88 -0.40 -1.25 16 15 C -0.13 -1.31 9.95 -39.87 -0.40 -1.71 16 16 C -0.09 -1.15 9.23 -39.60 -0.37 -1.52 16 17 C -0.07 -1.04 5.76 -106.59 -0.61 -1.66 16 18 C 0.08 1.46 5.78 -2.98 -0.02 1.44 16 19 C 0.17 3.28 3.09 -66.56 -0.21 3.07 16 20 H 0.06 1.23 7.83 -51.93 -0.41 0.83 16 21 N -0.72 -16.73 4.51 -52.10 -0.24 -16.97 16 22 C -0.24 -6.30 9.97 -15.06 -0.15 -6.45 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 26 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.24 6.23 -51.93 -0.32 0.91 16 33 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.29 8.02 -51.93 -0.42 0.87 16 37 H 0.08 1.21 7.77 -51.93 -0.40 0.81 16 38 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.17 2.48 4.96 -52.49 -0.26 2.22 16 44 H 0.09 1.54 6.08 -51.93 -0.32 1.22 16 45 H 0.08 1.66 7.92 -51.93 -0.41 1.25 16 46 H 0.39 9.59 5.51 -40.82 -0.23 9.37 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -30.62 377.09 -9.96 -40.59 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.53 Total: 11.06 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -4.04 Total: -3.50 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.12 Total: -60.80 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.07 Total: -9.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.62 -9.96 -40.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996202278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.875 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds