Wall clock time and date at job start Tue Mar 31 2020 23:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 110.65619 * 2 1 4 4 C 1.54940 * 110.73655 * 236.61233 * 2 1 3 5 5 N 1.48119 * 103.25356 * 204.28719 * 4 2 1 6 6 C 1.34776 * 127.03091 * 219.33590 * 5 4 2 7 7 O 1.21541 * 120.00171 * 359.97359 * 6 5 4 8 8 C 1.47951 * 119.99896 * 179.97438 * 6 5 4 9 9 N 1.32195 * 120.15739 * 5.48751 * 8 6 5 10 10 C 1.32028 * 122.68473 * 179.69376 * 9 8 6 11 11 C 1.36685 * 122.02479 * 0.59211 * 10 9 8 12 12 C 1.40534 * 118.84919 * 359.71497 * 11 10 9 13 13 C 1.40314 * 122.21916 * 179.97438 * 12 11 10 14 14 C 1.36207 * 119.45477 * 180.02562 * 13 12 11 15 15 C 1.39387 * 120.99703 * 359.97438 * 14 13 12 16 16 C 1.36255 * 121.08489 * 359.97438 * 15 14 13 17 17 C 1.40088 * 119.53926 * 0.02562 * 16 15 14 18 18 C 1.47482 * 105.93276 * 39.29015 * 5 4 2 19 19 C 1.54004 * 107.08344 * 334.55622 * 18 5 4 20 20 H 1.09005 * 110.32257 * 242.41422 * 19 18 5 21 21 N 1.46499 * 110.32458 * 120.19929 * 19 18 5 22 22 C 1.36940 * 120.00115 * 86.45418 * 21 19 18 23 23 H 1.08007 * 119.99904 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99946 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99911 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00091 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47009 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46875 * 119.99854 * 26 24 22 29 29 H 1.48498 * 109.47291 * 240.00292 * 26 24 22 30 30 H 1.09001 * 109.46909 * 296.80407 * 1 2 3 31 31 H 1.08995 * 109.47000 * 56.80577 * 1 2 3 32 32 H 1.08995 * 109.46948 * 176.80900 * 1 2 3 33 33 H 1.09003 * 109.46647 * 183.19274 * 3 2 1 34 34 H 1.08994 * 109.47267 * 303.19134 * 3 2 1 35 35 H 1.08998 * 109.46811 * 63.19389 * 3 2 1 36 36 H 1.09004 * 110.66441 * 322.72240 * 4 2 1 37 37 H 1.08997 * 110.66678 * 85.67871 * 4 2 1 38 38 H 1.08001 * 118.99385 * 180.27979 * 10 9 8 39 39 H 1.08001 * 120.57883 * 179.73228 * 11 10 9 40 40 H 1.07998 * 120.27853 * 359.97438 * 13 12 11 41 41 H 1.07997 * 119.50299 * 180.02562 * 14 13 12 42 42 H 1.07997 * 119.45699 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.22862 * 179.97438 * 16 15 14 44 44 H 1.08998 * 109.91204 * 215.19187 * 18 5 4 45 45 H 1.08998 * 109.91319 * 93.91921 * 18 5 4 46 46 H 0.96993 * 120.00026 * 266.44446 * 21 19 18 47 47 H 0.97004 * 119.99456 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 6 2.0787 -0.7974 -1.2099 5 7 3.4279 -1.2112 -0.7602 6 6 4.5538 -1.2496 -1.5001 7 8 4.5237 -0.9215 -2.6700 8 6 5.8264 -1.6910 -0.8881 9 7 5.8431 -2.1510 0.3511 10 6 6.9484 -2.5634 0.9438 11 6 8.1623 -2.5319 0.3164 12 6 8.2318 -2.0506 -1.0022 13 6 9.4402 -1.9866 -1.7124 14 6 9.4428 -1.5096 -2.9883 15 6 8.2636 -1.0850 -3.5982 16 6 7.0727 -1.1343 -2.9380 17 6 7.0309 -1.6190 -1.6243 18 6 3.2875 -1.5717 0.6630 19 6 2.0776 -0.7916 1.2100 20 1 2.3928 -0.1081 1.9984 21 7 1.0608 -1.7179 1.7145 22 6 1.1318 -2.1772 3.0026 23 1 1.9377 -1.8570 3.6465 24 6 0.1681 -3.0544 3.4807 25 7 -0.8136 -3.4450 2.6958 26 14 0.2653 -3.6817 5.2376 27 1 1.4552 -3.0971 5.9067 28 1 -0.9614 -3.2836 5.9738 29 1 0.3791 -5.1622 5.2291 30 1 -0.3633 0.4634 0.9173 31 1 -0.3633 0.5626 -0.8599 32 1 -0.3633 -1.0260 -0.0572 33 1 3.1581 1.4096 -0.0572 34 1 1.6716 1.9701 -0.8599 35 1 1.7643 1.9351 0.9172 36 1 1.4559 -1.6693 -1.4102 37 1 2.1430 -0.1613 -2.0926 38 1 6.8926 -2.9325 1.9573 39 1 9.0526 -2.8712 0.8249 40 1 10.3609 -2.3121 -1.2512 41 1 10.3724 -1.4604 -3.5358 42 1 8.2942 -0.7115 -4.6111 43 1 6.1675 -0.8014 -3.4238 44 1 4.1883 -1.2897 1.2080 45 1 3.1126 -2.6433 0.7590 46 1 0.3372 -2.0056 1.1362 47 1 -1.4869 -4.0583 3.0299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996202278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:39 Heat of formation + Delta-G solvation = 39.504442 kcal Electronic energy + Delta-G solvation = -29651.044777 eV Core-core repulsion = 25798.990047 eV Total energy + Delta-G solvation = -3852.054730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23777 -40.97510 -39.25983 -38.38502 -35.80807 -34.66246 -33.89945 -32.61698 -32.16786 -30.79911 -29.30326 -28.17508 -27.84431 -25.90413 -25.37656 -24.50899 -23.68034 -23.05544 -20.98220 -20.08903 -19.16979 -18.98133 -18.33079 -17.73876 -17.23919 -17.11321 -16.71733 -16.48743 -15.80914 -15.63993 -15.48778 -15.35767 -15.00923 -14.73047 -14.64420 -14.43802 -14.15300 -13.85130 -13.82645 -13.40454 -13.22630 -13.13155 -13.06808 -12.84440 -12.77074 -12.70906 -12.48011 -12.45300 -12.14062 -11.99321 -11.83413 -11.42057 -11.34159 -11.20029 -11.00820 -10.94076 -10.33658 -10.14676 -9.73738 -9.06843 -8.97582 -7.89981 -5.17765 -0.97512 -0.12097 0.69514 1.50149 1.50777 1.58953 1.60333 1.80684 2.19581 2.59506 2.98362 3.07285 3.41853 3.48915 3.59695 3.68774 3.79369 3.82075 3.88633 3.92567 4.05062 4.20296 4.27964 4.35690 4.39177 4.47325 4.48763 4.60220 4.65504 4.72305 4.76669 4.83224 4.88082 5.00931 5.02386 5.06848 5.09859 5.10716 5.15368 5.25628 5.34717 5.40968 5.42820 5.52271 5.55075 5.61411 5.62936 5.90707 6.31942 6.44219 6.67828 7.02461 7.39630 8.12807 8.37869 9.33427 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.003342 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.179906 B = 8377.223560 C = 9906.472768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.121 4.121 4 C 0.116 3.884 5 N -0.589 5.589 6 C 0.579 3.421 7 O -0.562 6.562 8 C 0.091 3.909 9 N -0.464 5.464 10 C 0.047 3.953 11 C -0.105 4.105 12 C -0.053 4.053 13 C -0.108 4.108 14 C -0.098 4.098 15 C -0.111 4.111 16 C -0.127 4.127 17 C -0.085 4.085 18 C 0.102 3.898 19 C 0.167 3.833 20 H 0.063 0.937 21 N -0.723 5.723 22 C -0.233 4.233 23 H 0.077 0.923 24 C -0.072 4.072 25 N -0.968 5.968 26 Si 0.967 3.033 27 H -0.265 1.265 28 H -0.296 1.296 29 H -0.298 1.298 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.181 0.819 39 H 0.186 0.814 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.091 0.909 45 H 0.046 0.954 46 H 0.379 0.621 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.925 6.673 -9.742 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.081 4.081 3 C -0.178 4.178 4 C -0.006 4.006 5 N -0.319 5.319 6 C 0.368 3.632 7 O -0.443 6.443 8 C -0.060 4.060 9 N -0.176 5.176 10 C -0.099 4.099 11 C -0.124 4.124 12 C -0.058 4.058 13 C -0.126 4.126 14 C -0.117 4.117 15 C -0.129 4.129 16 C -0.146 4.146 17 C -0.088 4.088 18 C -0.024 4.024 19 C 0.057 3.943 20 H 0.081 0.919 21 N -0.365 5.365 22 C -0.365 4.365 23 H 0.094 0.906 24 C -0.264 4.264 25 N -0.619 5.619 26 Si 0.797 3.203 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.226 1.226 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.198 0.802 39 H 0.203 0.797 40 H 0.187 0.813 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.215 0.785 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 21.286 6.738 -9.639 24.319 hybrid contribution -0.191 -0.964 0.487 1.097 sum 21.095 5.774 -9.151 23.709 Atomic orbital electron populations 1.21497 0.92745 1.01319 1.01887 1.21879 0.96526 0.95950 0.93713 1.21641 1.00056 0.93343 1.02801 1.22627 0.81568 0.98470 0.97927 1.48675 1.07825 1.62552 1.12803 1.17737 0.82474 0.78059 0.84918 1.90532 1.85110 1.52360 1.16267 1.21148 0.92900 1.00469 0.91438 1.67499 1.32886 1.07837 1.09341 1.22772 0.87563 0.98013 1.01572 1.22604 1.00522 0.96014 0.93293 1.18580 0.93570 0.98441 0.95249 1.21384 0.96635 0.99522 0.95034 1.21490 0.99250 0.95813 0.95146 1.21455 0.91950 0.98207 1.01277 1.22037 1.01202 0.98083 0.93325 1.18877 0.92834 1.00841 0.96273 1.23228 1.00646 0.99181 0.79339 1.21359 0.88275 0.90543 0.94143 0.91933 1.42758 1.29053 1.53060 1.11611 1.19643 1.07197 1.19951 0.89705 0.90557 1.25454 0.97866 1.01458 1.01664 1.69816 1.16236 1.38954 1.36861 0.85160 0.77305 0.77254 0.80580 1.18930 1.22361 1.22572 0.92917 0.90749 0.93926 0.93616 0.90805 0.91736 0.91828 0.89090 0.80208 0.79725 0.81276 0.81805 0.83297 0.83319 0.89078 0.93601 0.78543 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 7.82 71.99 0.56 -3.28 16 2 C -0.08 -2.58 0.93 -50.97 -0.05 -2.62 16 3 C -0.12 -3.29 8.49 71.98 0.61 -2.68 16 4 C 0.12 3.89 5.98 86.73 0.52 4.41 16 5 N -0.59 -21.25 3.20 -812.68 -2.60 -23.86 16 6 C 0.58 21.10 7.85 86.82 0.68 21.79 16 7 O -0.56 -21.34 13.65 -3.85 -0.05 -21.39 16 8 C 0.09 3.00 6.78 42.43 0.29 3.29 16 9 N -0.46 -14.66 6.79 -184.95 -1.26 -15.91 16 10 C 0.05 1.10 11.06 84.30 0.93 2.04 16 11 C -0.10 -1.88 9.88 22.47 0.22 -1.65 16 12 C -0.05 -1.13 5.75 -21.29 -0.12 -1.26 16 13 C -0.11 -1.54 9.82 22.30 0.22 -1.32 16 14 C -0.10 -1.31 9.95 22.07 0.22 -1.09 16 15 C -0.11 -2.03 9.95 22.08 0.22 -1.81 16 16 C -0.13 -3.38 9.23 22.26 0.21 -3.17 16 17 C -0.09 -2.43 5.76 -21.14 -0.12 -2.55 16 18 C 0.10 3.91 5.78 86.53 0.50 4.41 16 19 C 0.17 6.57 3.09 45.88 0.14 6.71 16 20 H 0.06 2.47 7.83 -2.38 -0.02 2.45 16 21 N -0.72 -35.15 4.51 -318.73 -1.44 -36.59 16 22 C -0.23 -12.53 9.97 84.03 0.84 -11.69 16 23 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 24 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 25 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 26 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 29 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.04 1.62 6.23 -2.39 -0.01 1.60 16 33 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 2.27 8.02 -2.38 -0.02 2.25 16 37 H 0.09 2.82 7.77 -2.39 -0.02 2.80 16 38 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.15 4.57 4.96 -3.00 -0.01 4.55 16 44 H 0.09 3.40 6.08 -2.39 -0.01 3.39 16 45 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 46 H 0.38 19.71 5.51 -92.71 -0.51 19.20 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -70.54 377.09 3.78 -66.76 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.48 Total: 35.39 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.34 Total: 5.93 kcal Atomic # 7 Polarization: -129.31 SS G_CDS: -5.01 Total: -134.33 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.54 3.78 -66.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996202278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.261 kcal (2) G-P(sol) polarization free energy of solvation -70.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds