Wall clock time and date at job start Tue Mar 31 2020 23:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.88843 * 2 1 4 4 C 1.55121 * 111.19412 * 236.06809 * 2 1 3 5 5 N 1.47423 * 104.72420 * 279.19516 * 4 2 1 6 6 C 1.34774 * 125.65398 * 155.81634 * 5 4 2 7 7 O 1.21568 * 119.99889 * 5.07686 * 6 5 4 8 8 C 1.47769 * 120.00175 * 185.07259 * 6 5 4 9 9 C 1.40638 * 119.80219 * 171.92813 * 8 6 5 10 10 C 1.35703 * 120.91784 * 180.02562 * 9 8 6 11 11 C 1.40756 * 120.11473 * 0.02562 * 10 9 8 12 12 N 1.33648 * 120.82994 * 179.97438 * 11 10 9 13 13 C 1.31119 * 121.38863 * 180.02562 * 12 11 10 14 14 C 1.39310 * 121.77465 * 359.97438 * 13 12 11 15 15 C 1.36577 * 119.90448 * 359.97438 * 14 13 12 16 16 C 1.40891 * 118.16012 * 0.04978 * 15 14 13 17 17 C 1.38540 * 119.80561 * 351.91098 * 8 6 5 18 18 C 1.47030 * 108.70102 * 335.54931 * 5 4 2 19 19 C 1.54326 * 107.26742 * 1.28670 * 18 5 4 20 20 H 1.08991 * 110.72242 * 263.82840 * 19 18 5 21 21 N 1.46505 * 110.71711 * 140.55494 * 19 18 5 22 22 C 1.36939 * 119.99553 * 86.45214 * 21 19 18 23 23 H 1.07993 * 120.00286 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99546 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00139 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99991 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47236 * 60.00136 * 26 24 22 28 28 H 1.48503 * 109.47461 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.47076 * 300.00248 * 26 24 22 30 30 H 1.09003 * 109.47168 * 296.12171 * 1 2 3 31 31 H 1.08997 * 109.47270 * 56.11766 * 1 2 3 32 32 H 1.08992 * 109.47172 * 176.12168 * 1 2 3 33 33 H 1.08993 * 109.47561 * 183.88175 * 3 2 1 34 34 H 1.09000 * 109.47209 * 303.88632 * 3 2 1 35 35 H 1.09008 * 109.47154 * 63.87981 * 3 2 1 36 36 H 1.09004 * 110.50136 * 160.34950 * 4 2 1 37 37 H 1.09005 * 110.34195 * 37.95476 * 4 2 1 38 38 H 1.07994 * 119.54111 * 359.72733 * 9 8 6 39 39 H 1.08000 * 119.94036 * 179.97438 * 10 9 8 40 40 H 1.08008 * 119.11280 * 180.02562 * 13 12 11 41 41 H 1.08007 * 120.05112 * 179.97438 * 14 13 12 42 42 H 1.07999 * 120.92612 * 179.97438 * 15 14 13 43 43 H 1.08000 * 120.30167 * 0.02562 * 17 8 6 44 44 H 1.08995 * 109.87982 * 120.70523 * 18 5 4 45 45 H 1.09000 * 109.88178 * 241.87366 * 18 5 4 46 46 H 0.96998 * 120.00174 * 266.45388 * 21 19 18 47 47 H 0.97003 * 120.00046 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0908 -0.8073 -1.2000 5 7 2.0138 -2.2161 -0.7725 6 6 1.9471 -3.2834 -1.5928 7 8 2.0401 -3.1325 -2.7954 8 6 1.7609 -4.6371 -1.0302 9 6 1.5216 -5.7243 -1.8896 10 6 1.3469 -6.9769 -1.3975 11 6 1.4030 -7.2045 -0.0096 12 7 1.2325 -8.4320 0.4907 13 6 1.2820 -8.6564 1.7816 14 6 1.5147 -7.6314 2.6959 15 6 1.6987 -6.3526 2.2530 16 6 1.6442 -6.1153 0.8653 17 6 1.8234 -4.8278 0.3406 18 6 2.0285 -2.2644 0.6969 19 6 2.0862 -0.8074 1.2025 20 1 3.1133 -0.5155 1.4212 21 7 1.2343 -0.6340 2.3818 22 6 1.7297 -0.9029 3.6298 23 1 2.7484 -1.2424 3.7448 24 6 0.9227 -0.7380 4.7471 25 7 -0.3188 -0.3237 4.6070 26 14 1.5986 -1.1041 6.4496 27 1 2.7662 -0.2267 6.7179 28 1 0.5452 -0.8513 7.4654 29 1 2.0215 -2.5260 6.5191 30 1 -0.3634 0.4525 0.9227 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3633 -1.0252 -0.0695 33 1 3.1629 1.4034 -0.0696 34 1 1.6698 1.9732 -0.8531 35 1 1.7824 1.9303 0.9228 36 1 3.1253 -0.5271 -1.3985 37 1 1.4764 -0.6456 -2.0858 38 1 1.4715 -5.5594 -2.9557 39 1 1.1637 -7.8003 -2.0718 40 1 1.1395 -9.6632 2.1458 41 1 1.5494 -7.8476 3.7535 42 1 1.8797 -5.5454 2.9473 43 1 2.0071 -3.9918 0.9992 44 1 1.1218 -2.7475 1.0609 45 1 2.9063 -2.8112 1.0411 46 1 0.3194 -0.3287 2.2785 47 1 -0.8826 -0.2081 5.3878 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996223837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:54 Heat of formation + Delta-G solvation = 59.907933 kcal Electronic energy + Delta-G solvation = -29732.022450 eV Core-core repulsion = 25880.852481 eV Total energy + Delta-G solvation = -3851.169968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07815 -40.06558 -38.17062 -36.63422 -34.37572 -33.77212 -33.13059 -31.00150 -30.72427 -30.17510 -27.86500 -27.06759 -26.46849 -24.85021 -24.07615 -23.62624 -22.39406 -21.41821 -20.03109 -18.85025 -18.24653 -17.37555 -17.19673 -16.79427 -16.09926 -15.92376 -15.29116 -14.78269 -14.57767 -14.42069 -14.15180 -14.09786 -13.95184 -13.65159 -13.41248 -13.17616 -13.08990 -12.77343 -12.58810 -12.52308 -12.18656 -11.85304 -11.68428 -11.59800 -11.47172 -11.15204 -11.09613 -10.97789 -10.66194 -10.62940 -10.47923 -10.34430 -10.00612 -9.86468 -9.73466 -9.55073 -9.05243 -8.89708 -8.43361 -8.34210 -7.19177 -5.95088 -3.26243 0.17033 0.63005 1.85887 2.41828 3.09031 3.30824 3.35341 3.37222 3.38374 4.06164 4.15395 4.40634 4.47031 4.53468 4.63191 4.81619 4.83109 4.92722 5.03562 5.06604 5.12374 5.21850 5.35238 5.42459 5.48644 5.55274 5.66992 5.68419 5.75214 5.81352 5.84790 5.91523 5.95131 5.98991 6.03101 6.05348 6.18331 6.20107 6.24751 6.30001 6.33777 6.42960 6.50427 6.53792 6.66576 6.71472 6.79122 7.52556 7.66400 7.77701 8.22409 8.26327 9.35116 9.88682 10.23832 11.26596 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008327 B = 0.004729 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3361.756677 B = 5919.812689 C = 8851.039705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.603 5.603 6 C 0.570 3.430 7 O -0.549 6.549 8 C -0.129 4.129 9 C -0.051 4.051 10 C -0.108 4.108 11 C 0.142 3.858 12 N -0.484 5.484 13 C 0.139 3.861 14 C -0.185 4.185 15 C -0.039 4.039 16 C -0.113 4.113 17 C -0.084 4.084 18 C 0.059 3.941 19 C 0.179 3.821 20 H 0.068 0.932 21 N -0.711 5.711 22 C -0.253 4.253 23 H 0.072 0.928 24 C -0.004 4.004 25 N -0.927 5.927 26 Si 0.906 3.094 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.147 0.853 43 H 0.179 0.821 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.391 0.609 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 -8.616 -7.549 12.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.187 4.187 4 C -0.004 4.004 5 N -0.335 5.335 6 C 0.360 3.640 7 O -0.428 6.428 8 C -0.132 4.132 9 C -0.071 4.071 10 C -0.127 4.127 11 C 0.020 3.980 12 N -0.192 5.192 13 C -0.034 4.034 14 C -0.205 4.205 15 C -0.065 4.065 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.067 4.067 19 C 0.066 3.934 20 H 0.086 0.914 21 N -0.353 5.353 22 C -0.384 4.384 23 H 0.089 0.911 24 C -0.201 4.201 25 N -0.574 5.574 26 Si 0.737 3.263 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.165 0.835 43 H 0.196 0.804 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.228 0.772 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.818 -9.230 -8.717 13.257 hybrid contribution 0.148 0.349 1.737 1.778 sum 3.966 -8.881 -6.981 11.972 Atomic orbital electron populations 1.21655 0.93473 1.01859 1.02062 1.22021 0.96557 0.95433 0.94692 1.21648 1.00265 0.94500 1.02267 1.22391 1.00769 0.79543 0.97697 1.48346 1.71273 1.06185 1.07730 1.17887 0.76957 0.83559 0.85603 1.90741 1.51809 1.85913 1.14370 1.19890 1.05766 0.93842 0.93722 1.20867 0.94882 0.90831 1.00549 1.20635 1.01920 0.97339 0.92816 1.19050 0.96277 0.88415 0.94218 1.68057 1.14044 1.21830 1.15272 1.23009 0.92320 0.99624 0.88408 1.21905 1.03088 0.93788 1.01726 1.21723 0.92715 0.97925 0.94174 1.18868 1.03564 0.94628 0.94454 1.23359 0.93213 0.97802 0.95821 1.23816 1.01247 1.03335 0.78274 1.21271 0.95665 0.89361 0.87070 0.91379 1.42547 1.13197 1.79227 1.00308 1.19190 0.96786 1.38797 0.83634 0.91053 1.24745 0.95931 1.01549 0.97906 1.69639 1.06573 1.51766 1.29442 0.86305 0.77781 0.78074 0.84187 1.21122 1.21640 1.21178 0.90809 0.93178 0.92765 0.92755 0.93004 0.91263 0.91382 0.90658 0.84219 0.84380 0.82417 0.84275 0.83498 0.80414 0.89685 0.91370 0.77199 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.94 37.16 0.30 -1.75 16 2 C -0.09 -1.26 0.87 -152.24 -0.13 -1.39 16 3 C -0.13 -1.71 8.68 37.16 0.32 -1.39 16 4 C 0.12 1.70 5.83 -2.42 -0.01 1.69 16 5 N -0.60 -9.37 3.31 -177.03 -0.59 -9.95 16 6 C 0.57 9.47 7.80 -12.37 -0.10 9.37 16 7 O -0.55 -10.33 16.64 5.31 0.09 -10.24 16 8 C -0.13 -1.95 5.87 -104.98 -0.62 -2.57 16 9 C -0.05 -0.70 9.49 -39.58 -0.38 -1.07 16 10 C -0.11 -1.42 9.95 -39.54 -0.39 -1.82 16 11 C 0.14 2.02 6.61 -84.78 -0.56 1.46 16 12 N -0.48 -6.54 10.33 -10.91 -0.11 -6.66 16 13 C 0.14 1.50 11.14 -17.46 -0.19 1.31 16 14 C -0.19 -1.95 10.03 -39.78 -0.40 -2.34 16 15 C -0.04 -0.49 9.89 -39.18 -0.39 -0.88 16 16 C -0.11 -1.60 5.74 -106.81 -0.61 -2.21 16 17 C -0.08 -1.21 8.35 -38.74 -0.32 -1.53 16 18 C 0.06 0.92 4.30 -3.06 -0.01 0.91 16 19 C 0.18 3.06 2.85 -66.09 -0.19 2.87 16 20 H 0.07 1.17 8.02 -51.93 -0.42 0.76 16 21 N -0.71 -15.29 5.08 -51.65 -0.26 -15.55 16 22 C -0.25 -6.15 9.98 -15.06 -0.15 -6.30 16 23 H 0.07 1.67 7.83 -52.49 -0.41 1.25 16 24 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 25 N -0.93 -25.57 13.06 55.49 0.72 -24.85 16 26 Si 0.91 20.44 29.55 -169.99 -5.02 15.42 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.07 1.28 6.34 -51.93 -0.33 0.95 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.89 7.91 -51.93 -0.41 0.47 16 33 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 37 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 38 H 0.14 1.79 7.63 -52.49 -0.40 1.39 16 39 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 42 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.18 2.55 2.72 -59.60 -0.16 2.39 16 44 H 0.09 1.45 6.55 -51.93 -0.34 1.11 16 45 H 0.07 1.01 6.80 -51.93 -0.35 0.65 16 46 H 0.39 9.02 5.26 -40.82 -0.21 8.81 16 47 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 378.21 15.07 5.70 5.70 Total: -1.00 -29.77 378.21 -9.79 -39.56 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.38 Total: 12.43 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.94 Total: -5.85 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.24 Total: -57.01 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.77 -9.79 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996223837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.465 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds