Wall clock time and date at job start Tue Mar 31 2020 23:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 110.88519 * 2 1 4 4 C 1.54910 * 111.00869 * 123.87889 * 2 1 3 5 5 N 1.47420 * 104.83055 * 81.06720 * 4 2 1 6 6 C 1.34784 * 125.64804 * 204.09494 * 5 4 2 7 7 O 1.21560 * 119.99790 * 355.06410 * 6 5 4 8 8 C 1.47752 * 119.99956 * 175.06197 * 6 5 4 9 9 C 1.40595 * 120.27080 * 187.82910 * 8 6 5 10 10 N 1.30801 * 121.54588 * 180.02562 * 9 8 6 11 11 C 1.33821 * 121.71361 * 359.97438 * 10 9 8 12 12 C 1.40524 * 120.81952 * 180.02562 * 11 10 9 13 13 C 1.36135 * 119.81754 * 179.91417 * 12 11 10 14 14 C 1.39334 * 121.08772 * 0.08794 * 13 12 11 15 15 C 1.36141 * 120.83387 * 359.93132 * 14 13 12 16 16 C 1.40541 * 119.61860 * 0.02562 * 15 14 13 17 17 C 1.39016 * 120.27249 * 7.55403 * 8 6 5 18 18 C 1.47017 * 108.70518 * 24.13115 * 5 4 2 19 19 C 1.54324 * 107.26916 * 358.94042 * 18 5 4 20 20 H 1.09009 * 110.71916 * 219.44395 * 19 18 5 21 21 N 1.46491 * 110.71965 * 96.17174 * 19 18 5 22 22 C 1.36940 * 120.00300 * 86.45463 * 21 19 18 23 23 H 1.07998 * 119.99998 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00169 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99897 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00239 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47198 * 89.99894 * 26 24 22 28 28 H 1.48495 * 109.47398 * 209.99930 * 26 24 22 29 29 H 1.48504 * 109.46735 * 330.00352 * 26 24 22 30 30 H 1.09000 * 109.47297 * 297.57246 * 1 2 3 31 31 H 1.08997 * 109.47623 * 57.57155 * 1 2 3 32 32 H 1.09001 * 109.46947 * 177.57213 * 1 2 3 33 33 H 1.08991 * 109.47054 * 182.42664 * 3 2 1 34 34 H 1.09000 * 109.47181 * 302.42873 * 3 2 1 35 35 H 1.08997 * 109.46894 * 62.42421 * 3 2 1 36 36 H 1.09004 * 110.36375 * 322.23202 * 4 2 1 37 37 H 1.08996 * 110.36740 * 199.90903 * 4 2 1 38 38 H 1.08005 * 119.23101 * 0.02562 * 9 8 6 39 39 H 1.08007 * 120.09394 * 359.97438 * 12 11 10 40 40 H 1.08002 * 119.45580 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.58424 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.19442 * 179.97438 * 15 14 13 43 43 H 1.08000 * 121.01391 * 0.02562 * 17 8 6 44 44 H 1.08994 * 109.88551 * 118.35971 * 18 5 4 45 45 H 1.09006 * 109.88504 * 239.52641 * 18 5 4 46 46 H 0.96998 * 120.00244 * 266.45080 * 21 19 18 47 47 H 0.97000 * 119.99636 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0853 -0.8061 1.2006 5 7 2.0140 -2.2155 0.7741 6 6 1.9473 -3.2822 1.5953 7 8 2.0328 -3.1295 2.7982 8 6 1.7701 -4.6372 1.0333 9 6 1.5355 -5.7320 1.8835 10 7 1.3756 -6.9419 1.4130 11 6 1.4266 -7.1988 0.1007 12 6 1.2517 -8.5060 -0.3844 13 6 1.3059 -8.7440 -1.7237 14 6 1.5347 -7.7102 -2.6294 15 6 1.7094 -6.4307 -2.1983 16 6 1.6589 -6.1483 -0.8225 17 6 1.8285 -4.8390 -0.3409 18 6 2.0287 -2.2648 -0.6951 19 6 2.0862 -0.8083 -1.2019 20 1 1.4523 -0.6799 -2.0794 21 7 3.4666 -0.4160 -1.4960 22 6 4.0066 -0.6813 -2.7262 23 1 3.4148 -1.1801 -3.4794 24 6 5.3148 -0.3101 -3.0047 25 7 5.8339 -0.5656 -4.1869 26 14 6.3387 0.5521 -1.7016 27 1 7.0613 -0.4601 -0.8901 28 1 7.3201 1.4521 -2.3586 29 1 5.4484 1.3494 -0.8202 30 1 -0.3634 0.4757 0.9109 31 1 -0.3634 0.5510 -0.8674 32 1 -0.3633 -1.0268 -0.0435 33 1 3.1642 1.4030 -0.0435 34 1 1.6901 1.9655 -0.8674 35 1 1.7605 1.9386 0.9109 36 1 1.4672 -0.6453 2.0839 37 1 3.1182 -0.5227 1.4026 38 1 1.4860 -5.5703 2.9503 39 1 1.0738 -9.3196 0.3034 40 1 1.1702 -9.7508 -2.0901 41 1 1.5734 -7.9265 -3.6868 42 1 1.8866 -5.6374 -2.9094 43 1 2.0034 -4.0155 -1.0174 44 1 2.9064 -2.8119 -1.0390 45 1 1.1220 -2.7483 -1.0589 46 1 3.9983 0.0317 -0.8194 47 1 6.7480 -0.3058 -4.3816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996351920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:47 Heat of formation + Delta-G solvation = 61.925286 kcal Electronic energy + Delta-G solvation = -29741.030964 eV Core-core repulsion = 25889.948474 eV Total energy + Delta-G solvation = -3851.082489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18875 -40.05259 -38.22007 -36.88721 -34.54172 -33.92000 -32.95601 -31.22721 -30.79455 -30.21670 -28.59669 -27.02955 -26.59049 -24.99393 -23.94719 -23.53830 -22.25999 -21.57181 -20.02375 -19.22517 -18.43325 -17.73037 -17.31544 -16.65718 -16.05241 -15.97891 -15.46264 -14.88929 -14.71030 -14.51723 -14.39806 -14.24910 -14.00540 -13.72463 -13.57415 -13.35053 -13.02723 -12.72633 -12.58980 -12.24142 -12.17441 -11.92407 -11.88374 -11.84238 -11.73688 -11.60702 -11.31776 -11.06687 -10.70285 -10.62581 -10.57638 -10.38539 -10.18209 -9.99331 -9.70599 -9.51537 -9.09326 -8.95239 -8.48843 -8.41952 -7.48064 -5.93881 -3.31697 0.11977 0.53404 1.75451 2.49085 3.02715 3.22622 3.25484 3.29610 3.36485 4.00378 4.10993 4.36946 4.44330 4.44456 4.61176 4.66373 4.72888 4.83671 4.88861 4.97020 5.00189 5.09064 5.15194 5.34212 5.36284 5.39993 5.47914 5.61161 5.67544 5.70528 5.71221 5.79336 5.81840 5.90802 5.93620 5.95066 6.04300 6.09597 6.13318 6.14449 6.26168 6.29944 6.34509 6.41597 6.50239 6.60426 6.66599 7.58070 7.77044 7.79338 8.18954 8.24673 9.01152 9.73914 9.91735 11.23464 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.003968 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.639346 B = 7054.488714 C = 8538.756120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 C -0.130 4.130 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.576 3.424 7 O -0.545 6.545 8 C -0.186 4.186 9 C 0.184 3.816 10 N -0.483 5.483 11 C 0.139 3.861 12 C -0.104 4.104 13 C -0.091 4.091 14 C -0.125 4.125 15 C -0.080 4.080 16 C -0.113 4.113 17 C -0.045 4.045 18 C 0.056 3.944 19 C 0.184 3.816 20 H 0.082 0.918 21 N -0.736 5.736 22 C -0.255 4.255 23 H 0.093 0.907 24 C 0.014 3.986 25 N -0.927 5.927 26 Si 0.878 3.122 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.275 1.275 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.170 0.830 39 H 0.135 0.865 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.183 0.817 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.365 0.635 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.352 -8.747 5.664 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.093 4.093 3 C -0.188 4.188 4 C -0.002 4.002 5 N -0.331 5.331 6 C 0.365 3.635 7 O -0.425 6.425 8 C -0.191 4.191 9 C 0.010 3.990 10 N -0.190 5.190 11 C 0.018 3.982 12 C -0.122 4.122 13 C -0.111 4.111 14 C -0.143 4.143 15 C -0.099 4.099 16 C -0.115 4.115 17 C -0.071 4.071 18 C -0.069 4.069 19 C 0.072 3.928 20 H 0.100 0.900 21 N -0.378 5.378 22 C -0.385 4.385 23 H 0.111 0.889 24 C -0.183 4.183 25 N -0.573 5.573 26 Si 0.708 3.292 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.201 1.201 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.187 0.813 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.155 0.845 43 H 0.199 0.801 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.200 0.800 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.386 -9.566 6.567 16.972 hybrid contribution 1.188 1.159 0.220 1.674 sum -11.199 -8.407 6.788 15.561 Atomic orbital electron populations 1.21682 0.93414 1.01792 1.01864 1.22055 0.95855 0.95970 0.95413 1.21644 1.01882 0.93830 1.01403 1.22321 1.01124 0.79493 0.97294 1.48275 1.71180 1.06138 1.07489 1.17637 0.77062 0.83165 0.85606 1.90756 1.51751 1.85746 1.14209 1.20895 1.08130 0.95455 0.94648 1.23025 0.89423 0.85966 1.00597 1.68057 1.14876 1.22218 1.13879 1.19078 0.96388 0.93882 0.88829 1.20796 1.00827 0.94856 0.95750 1.20980 0.97604 0.99640 0.92900 1.20956 1.00281 0.92724 1.00306 1.21185 0.97165 0.97825 0.93746 1.18891 1.03549 0.93916 0.95104 1.23753 0.89404 0.97890 0.96017 1.23731 1.00933 1.03043 0.79209 1.21218 0.87815 0.88830 0.94911 0.90026 1.42828 1.09546 1.70863 1.14604 1.19015 0.96288 1.33555 0.89600 0.88911 1.24641 0.96924 1.00426 0.96270 1.69686 1.15318 1.51673 1.20609 0.86679 0.80799 0.79903 0.81812 1.20994 1.21523 1.20143 0.92602 0.92006 0.92675 0.91732 0.91702 0.93108 0.90598 0.91371 0.81332 0.84727 0.85239 0.85195 0.84457 0.80055 0.89157 0.91366 0.80048 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.60 37.16 0.32 -1.14 16 2 C -0.09 -1.24 0.83 -152.36 -0.13 -1.36 16 3 C -0.13 -1.77 8.35 37.16 0.31 -1.46 16 4 C 0.12 1.76 5.80 -2.53 -0.01 1.75 16 5 N -0.60 -9.20 3.31 -173.34 -0.57 -9.77 16 6 C 0.58 9.45 7.81 -12.37 -0.10 9.35 16 7 O -0.55 -10.20 16.67 5.31 0.09 -10.11 16 8 C -0.19 -2.76 5.88 -104.83 -0.62 -3.38 16 9 C 0.18 2.65 10.73 -17.10 -0.18 2.46 16 10 N -0.48 -7.04 10.30 -10.67 -0.11 -7.15 16 11 C 0.14 1.90 6.61 -84.79 -0.56 1.34 16 12 C -0.10 -1.15 9.97 -39.48 -0.39 -1.54 16 13 C -0.09 -0.83 9.94 -39.93 -0.40 -1.23 16 14 C -0.12 -1.18 9.96 -39.93 -0.40 -1.58 16 15 C -0.08 -0.90 9.77 -39.47 -0.39 -1.29 16 16 C -0.11 -1.50 5.74 -106.82 -0.61 -2.11 16 17 C -0.05 -0.62 8.44 -38.43 -0.32 -0.95 16 18 C 0.06 0.83 4.22 -3.07 -0.01 0.82 16 19 C 0.18 2.95 2.87 -66.10 -0.19 2.76 16 20 H 0.08 1.29 8.03 -51.92 -0.42 0.88 16 21 N -0.74 -15.07 4.39 -51.66 -0.23 -15.30 16 22 C -0.26 -6.37 10.46 -15.06 -0.16 -6.53 16 23 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 24 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 25 N -0.93 -27.19 13.97 55.49 0.78 -26.41 16 26 Si 0.88 20.83 27.74 -169.99 -4.71 16.11 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.05 6.52 56.52 0.37 -5.68 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.62 7.81 -51.93 -0.41 0.21 16 33 H 0.06 1.02 6.17 -51.93 -0.32 0.70 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 1.07 8.00 -51.93 -0.42 0.65 16 37 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 38 H 0.17 2.23 7.65 -52.48 -0.40 1.82 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.18 2.37 2.88 -54.67 -0.16 2.21 16 44 H 0.09 1.50 6.70 -51.93 -0.35 1.15 16 45 H 0.07 0.85 6.67 -51.93 -0.35 0.50 16 46 H 0.36 7.60 3.88 -40.82 -0.16 7.44 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -31.16 375.60 -9.40 -40.56 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.36 Total: 10.21 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -3.94 Total: -3.79 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.14 Total: -58.64 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.11 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.16 -9.40 -40.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996351920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.482 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds