Wall clock time and date at job start Tue Mar 31 2020 23:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 110.88519 * 2 1 4 4 C 1.54910 * 111.00869 * 123.87889 * 2 1 3 5 5 N 1.47420 * 104.83055 * 81.06720 * 4 2 1 6 6 C 1.34784 * 125.64804 * 204.09494 * 5 4 2 7 7 O 1.21560 * 119.99790 * 355.06410 * 6 5 4 8 8 C 1.47752 * 119.99956 * 175.06197 * 6 5 4 9 9 C 1.40595 * 120.27080 * 187.82910 * 8 6 5 10 10 N 1.30801 * 121.54588 * 180.02562 * 9 8 6 11 11 C 1.33821 * 121.71361 * 359.97438 * 10 9 8 12 12 C 1.40524 * 120.81952 * 180.02562 * 11 10 9 13 13 C 1.36135 * 119.81754 * 179.91417 * 12 11 10 14 14 C 1.39334 * 121.08772 * 0.08794 * 13 12 11 15 15 C 1.36141 * 120.83387 * 359.93132 * 14 13 12 16 16 C 1.40541 * 119.61860 * 0.02562 * 15 14 13 17 17 C 1.39016 * 120.27249 * 7.55403 * 8 6 5 18 18 C 1.47017 * 108.70518 * 24.13115 * 5 4 2 19 19 C 1.54324 * 107.26916 * 358.94042 * 18 5 4 20 20 H 1.09009 * 110.71916 * 219.44395 * 19 18 5 21 21 N 1.46491 * 110.71965 * 96.17174 * 19 18 5 22 22 C 1.36940 * 120.00300 * 86.45463 * 21 19 18 23 23 H 1.07998 * 119.99998 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00169 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99897 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00239 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47198 * 89.99894 * 26 24 22 28 28 H 1.48495 * 109.47398 * 209.99930 * 26 24 22 29 29 H 1.48504 * 109.46735 * 330.00352 * 26 24 22 30 30 H 1.09000 * 109.47297 * 297.57246 * 1 2 3 31 31 H 1.08997 * 109.47623 * 57.57155 * 1 2 3 32 32 H 1.09001 * 109.46947 * 177.57213 * 1 2 3 33 33 H 1.08991 * 109.47054 * 182.42664 * 3 2 1 34 34 H 1.09000 * 109.47181 * 302.42873 * 3 2 1 35 35 H 1.08997 * 109.46894 * 62.42421 * 3 2 1 36 36 H 1.09004 * 110.36375 * 322.23202 * 4 2 1 37 37 H 1.08996 * 110.36740 * 199.90903 * 4 2 1 38 38 H 1.08005 * 119.23101 * 0.02562 * 9 8 6 39 39 H 1.08007 * 120.09394 * 359.97438 * 12 11 10 40 40 H 1.08002 * 119.45580 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.58424 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.19442 * 179.97438 * 15 14 13 43 43 H 1.08000 * 121.01391 * 0.02562 * 17 8 6 44 44 H 1.08994 * 109.88551 * 118.35971 * 18 5 4 45 45 H 1.09006 * 109.88504 * 239.52641 * 18 5 4 46 46 H 0.96998 * 120.00244 * 266.45080 * 21 19 18 47 47 H 0.97000 * 119.99636 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 6 2.0853 -0.8061 1.2006 5 7 2.0140 -2.2155 0.7741 6 6 1.9473 -3.2822 1.5953 7 8 2.0328 -3.1295 2.7982 8 6 1.7701 -4.6372 1.0333 9 6 1.5355 -5.7320 1.8835 10 7 1.3756 -6.9419 1.4130 11 6 1.4266 -7.1988 0.1007 12 6 1.2517 -8.5060 -0.3844 13 6 1.3059 -8.7440 -1.7237 14 6 1.5347 -7.7102 -2.6294 15 6 1.7094 -6.4307 -2.1983 16 6 1.6589 -6.1483 -0.8225 17 6 1.8285 -4.8390 -0.3409 18 6 2.0287 -2.2648 -0.6951 19 6 2.0862 -0.8083 -1.2019 20 1 1.4523 -0.6799 -2.0794 21 7 3.4666 -0.4160 -1.4960 22 6 4.0066 -0.6813 -2.7262 23 1 3.4148 -1.1801 -3.4794 24 6 5.3148 -0.3101 -3.0047 25 7 5.8339 -0.5656 -4.1869 26 14 6.3387 0.5521 -1.7016 27 1 7.0613 -0.4601 -0.8901 28 1 7.3201 1.4521 -2.3586 29 1 5.4484 1.3494 -0.8202 30 1 -0.3634 0.4757 0.9109 31 1 -0.3634 0.5510 -0.8674 32 1 -0.3633 -1.0268 -0.0435 33 1 3.1642 1.4030 -0.0435 34 1 1.6901 1.9655 -0.8674 35 1 1.7605 1.9386 0.9109 36 1 1.4672 -0.6453 2.0839 37 1 3.1182 -0.5227 1.4026 38 1 1.4860 -5.5703 2.9503 39 1 1.0738 -9.3196 0.3034 40 1 1.1702 -9.7508 -2.0901 41 1 1.5734 -7.9265 -3.6868 42 1 1.8866 -5.6374 -2.9094 43 1 2.0034 -4.0155 -1.0174 44 1 2.9064 -2.8119 -1.0390 45 1 1.1220 -2.7483 -1.0589 46 1 3.9983 0.0317 -0.8194 47 1 6.7480 -0.3058 -4.3816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996351920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:46 Heat of formation + Delta-G solvation = 43.572648 kcal Electronic energy + Delta-G solvation = -29741.826794 eV Core-core repulsion = 25889.948474 eV Total energy + Delta-G solvation = -3851.878320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26572 -41.18941 -39.46468 -37.85955 -35.97989 -35.34127 -34.06457 -33.03971 -31.76388 -31.12613 -29.97388 -28.11910 -27.72180 -26.22651 -25.19612 -24.72967 -23.36732 -22.85767 -21.16325 -20.60823 -19.45033 -19.40645 -18.32871 -17.77616 -17.28643 -17.18523 -16.57721 -16.42225 -16.10080 -15.62397 -15.54275 -15.24465 -15.21193 -14.91203 -14.64287 -14.60186 -14.34541 -14.14662 -13.72201 -13.65426 -13.36425 -13.20149 -12.90516 -12.81909 -12.76928 -12.72969 -12.65326 -12.44342 -12.17587 -11.96940 -11.83945 -11.66095 -11.55433 -11.42753 -11.26026 -11.00559 -10.54562 -9.96880 -9.70774 -9.32949 -9.31962 -8.01101 -5.33585 -0.86338 -0.44430 0.80807 1.35795 1.38332 1.44477 1.44593 1.81006 2.14635 2.47558 3.02143 3.08215 3.27283 3.28835 3.44529 3.51181 3.56696 3.66896 3.74509 3.79842 3.93819 3.98189 4.19150 4.23938 4.30183 4.35272 4.44070 4.44979 4.56172 4.66208 4.68520 4.69978 4.78380 4.86885 4.91192 4.96774 5.03984 5.04689 5.06696 5.16679 5.25737 5.32897 5.37549 5.41805 5.45289 5.50764 5.81128 5.83311 6.22936 6.33192 6.72790 6.92328 7.08571 7.84069 8.00861 9.19462 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.003968 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.639346 B = 7054.488714 C = 8538.756120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.129 4.129 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.575 3.425 7 O -0.574 6.574 8 C -0.202 4.202 9 C 0.174 3.826 10 N -0.494 5.494 11 C 0.117 3.883 12 C -0.119 4.119 13 C -0.075 4.075 14 C -0.115 4.115 15 C -0.096 4.096 16 C -0.128 4.128 17 C -0.042 4.042 18 C 0.065 3.935 19 C 0.175 3.825 20 H 0.089 0.911 21 N -0.739 5.739 22 C -0.220 4.220 23 H 0.075 0.925 24 C -0.051 4.051 25 N -0.977 5.977 26 Si 0.930 3.070 27 H -0.292 1.292 28 H -0.299 1.299 29 H -0.249 1.249 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.172 0.828 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.186 0.814 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.364 0.636 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.231 -9.543 5.549 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 C -0.187 4.187 4 C -0.006 4.006 5 N -0.329 5.329 6 C 0.366 3.634 7 O -0.456 6.456 8 C -0.207 4.207 9 C 0.000 4.000 10 N -0.202 5.202 11 C -0.003 4.003 12 C -0.137 4.137 13 C -0.095 4.095 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.067 4.067 18 C -0.059 4.059 19 C 0.065 3.935 20 H 0.107 0.893 21 N -0.382 5.382 22 C -0.351 4.351 23 H 0.093 0.907 24 C -0.243 4.243 25 N -0.627 5.627 26 Si 0.759 3.241 27 H -0.219 1.219 28 H -0.226 1.226 29 H -0.173 1.173 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.189 0.811 39 H 0.165 0.835 40 H 0.185 0.815 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.202 0.798 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.199 0.801 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.326 -10.353 6.488 18.829 hybrid contribution 1.655 1.237 0.168 2.074 sum -12.671 -9.116 6.656 16.969 Atomic orbital electron populations 1.21660 0.91029 1.02287 1.03245 1.22013 0.97497 0.95362 0.93041 1.21636 1.00258 0.93951 1.02813 1.22409 1.00652 0.79284 0.98271 1.48309 1.70712 1.06330 1.07561 1.17865 0.76480 0.83791 0.85299 1.90728 1.53303 1.86228 1.15365 1.20782 1.09994 0.94744 0.95220 1.23068 0.90046 0.86083 1.00815 1.68058 1.15263 1.22125 1.14751 1.19514 0.96949 0.95265 0.88610 1.21068 1.01452 0.94090 0.97115 1.21439 0.94806 1.01346 0.91883 1.21404 0.97928 0.91902 1.02058 1.21407 0.97882 0.99270 0.92909 1.19083 1.04077 0.93557 0.96222 1.23783 0.88888 0.98489 0.95524 1.23571 1.01512 1.01887 0.78968 1.21484 0.85610 0.89943 0.96489 0.89273 1.42845 1.11379 1.70968 1.13013 1.19043 0.95491 1.30179 0.90406 0.90749 1.25242 0.98495 1.02669 0.97907 1.69830 1.15449 1.54619 1.22844 0.85802 0.79486 0.78888 0.79895 1.21898 1.22618 1.17325 0.91073 0.90841 0.92633 0.94107 0.91469 0.90682 0.89702 0.92775 0.81082 0.83501 0.81481 0.82092 0.83509 0.79767 0.91050 0.88556 0.80085 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.60 71.98 0.62 -1.79 16 2 C -0.08 -1.94 0.83 -50.79 -0.04 -1.98 16 3 C -0.13 -3.21 8.35 71.98 0.60 -2.61 16 4 C 0.12 3.26 5.80 86.86 0.50 3.77 16 5 N -0.60 -17.97 3.31 -820.61 -2.72 -20.69 16 6 C 0.58 18.94 7.81 86.76 0.68 19.62 16 7 O -0.57 -21.76 16.67 -3.91 -0.07 -21.83 16 8 C -0.20 -6.07 5.88 -20.00 -0.12 -6.19 16 9 C 0.17 5.12 10.73 85.42 0.92 6.04 16 10 N -0.49 -14.47 10.30 -187.68 -1.93 -16.41 16 11 C 0.12 3.13 6.61 40.27 0.27 3.39 16 12 C -0.12 -2.39 9.97 22.34 0.22 -2.17 16 13 C -0.08 -1.10 9.94 22.04 0.22 -0.88 16 14 C -0.12 -1.78 9.96 22.05 0.22 -1.56 16 15 C -0.10 -1.96 9.77 22.34 0.22 -1.75 16 16 C -0.13 -3.29 5.74 -21.29 -0.12 -3.41 16 17 C -0.04 -1.13 8.44 23.02 0.19 -0.94 16 18 C 0.07 1.86 4.22 86.73 0.37 2.23 16 19 C 0.17 5.33 2.87 46.18 0.13 5.46 16 20 H 0.09 2.65 8.03 -2.38 -0.02 2.63 16 21 N -0.74 -29.69 4.39 -317.34 -1.39 -31.08 16 22 C -0.22 -11.02 10.46 84.03 0.88 -10.14 16 23 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 24 C -0.05 -2.79 5.50 84.86 0.47 -2.32 16 25 N -0.98 -58.85 13.97 21.65 0.30 -58.55 16 26 Si 0.93 43.43 27.74 68.60 1.90 45.33 16 27 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 29 H -0.25 -10.35 6.52 99.48 0.65 -9.70 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 1.08 7.81 -2.39 -0.02 1.07 16 33 H 0.04 1.21 6.17 -2.39 -0.01 1.20 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 2.25 8.00 -2.39 -0.02 2.23 16 37 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 38 H 0.17 4.73 7.65 -2.91 -0.02 4.71 16 39 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.19 4.73 2.88 -4.96 -0.01 4.72 16 44 H 0.07 2.35 6.70 -2.39 -0.02 2.34 16 45 H 0.10 2.24 6.67 -2.38 -0.02 2.22 16 46 H 0.36 14.81 3.88 -92.71 -0.36 14.45 16 47 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -69.27 375.60 2.89 -66.38 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.58 Total: 32.06 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 6.22 Total: 4.78 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -5.74 Total: -126.73 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.07 Total: -21.83 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.90 Total: 45.33 kcal Total: -69.27 2.89 -66.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996351920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.954 kcal (2) G-P(sol) polarization free energy of solvation -69.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds