Wall clock time and date at job start Tue Mar 31 2020 23:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 110.89032 * 2 1 4 4 C 1.55135 * 111.19631 * 236.06387 * 2 1 3 5 5 N 1.47427 * 104.72020 * 279.19474 * 4 2 1 6 6 C 1.34779 * 125.64454 * 155.81638 * 5 4 2 7 7 O 1.21508 * 120.00000 * 359.71063 * 6 5 4 8 8 C 1.48267 * 119.99871 * 179.71655 * 6 5 4 9 9 C 1.40280 * 119.24025 * 179.97438 * 8 6 5 10 10 C 1.36507 * 119.81643 * 179.97438 * 9 8 6 11 11 C 1.40750 * 118.24134 * 0.02562 * 10 9 8 12 12 C 1.40422 * 121.27007 * 180.26802 * 11 10 9 13 13 C 1.36132 * 119.64932 * 180.24944 * 12 11 10 14 14 C 1.39439 * 120.91134 * 359.49181 * 13 12 11 15 15 C 1.35994 * 121.08805 * 0.24379 * 14 13 12 16 16 C 1.40832 * 119.73258 * 0.02562 * 15 14 13 17 17 N 1.31876 * 119.24061 * 0.02562 * 8 6 5 18 18 C 1.47017 * 108.70584 * 335.55117 * 5 4 2 19 19 C 1.54325 * 107.27158 * 1.28672 * 18 5 4 20 20 H 1.08999 * 110.71707 * 263.83182 * 19 18 5 21 21 N 1.46500 * 110.71922 * 140.55632 * 19 18 5 22 22 C 1.36933 * 120.00071 * 86.45599 * 21 19 18 23 23 H 1.08001 * 120.00000 * 359.97438 * 22 21 19 24 24 C 1.38810 * 120.00224 * 180.02562 * 22 21 19 25 25 N 1.31622 * 120.00134 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99962 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46796 * 90.00365 * 26 24 22 28 28 H 1.48498 * 109.47289 * 210.00298 * 26 24 22 29 29 H 1.48500 * 109.47146 * 330.00662 * 26 24 22 30 30 H 1.08996 * 109.47769 * 296.12237 * 1 2 3 31 31 H 1.09007 * 109.46962 * 56.12112 * 1 2 3 32 32 H 1.08997 * 109.47192 * 176.11644 * 1 2 3 33 33 H 1.08997 * 109.47557 * 183.87744 * 3 2 1 34 34 H 1.09002 * 109.47062 * 303.87968 * 3 2 1 35 35 H 1.09005 * 109.46968 * 63.87662 * 3 2 1 36 36 H 1.09000 * 110.49805 * 160.34970 * 4 2 1 37 37 H 1.08998 * 110.33570 * 37.95537 * 4 2 1 38 38 H 1.08005 * 120.09039 * 359.97216 * 9 8 6 39 39 H 1.08001 * 120.87647 * 179.97438 * 10 9 8 40 40 H 1.07995 * 120.17742 * 0.02562 * 12 11 10 41 41 H 1.08002 * 119.54710 * 179.77992 * 13 12 11 42 42 H 1.08004 * 119.45640 * 180.25414 * 14 13 12 43 43 H 1.07995 * 120.13722 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.88184 * 120.70568 * 18 5 4 45 45 H 1.09000 * 109.87898 * 241.71635 * 18 5 4 46 46 H 0.96996 * 120.00327 * 266.45566 * 21 19 18 47 47 H 0.96996 * 120.00093 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0909 -0.8075 -1.2000 5 7 2.0139 -2.2162 -0.7723 6 6 1.9471 -3.2836 -1.5926 7 8 1.9420 -3.1246 -2.7973 8 6 1.8799 -4.6517 -1.0251 9 6 1.8103 -5.7511 -1.8935 10 6 1.7484 -7.0159 -1.3837 11 6 1.7564 -7.1712 0.0152 12 6 1.7008 -8.4431 0.6077 13 6 1.7052 -8.5548 1.9644 14 6 1.7750 -7.4232 2.7761 15 6 1.8355 -6.1757 2.2380 16 6 1.8275 -6.0175 0.8386 17 7 1.8858 -4.8068 0.2845 18 6 2.0284 -2.2644 0.6970 19 6 2.0861 -0.8075 1.2026 20 1 3.1132 -0.5156 1.4212 21 7 1.2342 -0.6340 2.3818 22 6 1.7294 -0.9028 3.6298 23 1 2.7479 -1.2431 3.7448 24 6 0.9221 -0.7389 4.7470 25 7 1.3980 -0.9978 5.9466 26 14 -0.8398 -0.1510 4.5480 27 1 -1.7365 -1.3228 4.3795 28 1 -1.2458 0.6135 5.7546 29 1 -0.9378 0.7233 3.3518 30 1 -0.3634 0.4524 0.9226 31 1 -0.3633 0.5729 -0.8532 32 1 -0.3633 -1.0253 -0.0696 33 1 3.1629 1.4033 -0.0695 34 1 1.6698 1.9731 -0.8532 35 1 1.7823 1.9302 0.9227 36 1 3.1253 -0.5272 -1.3985 37 1 1.4765 -0.6458 -2.0857 38 1 1.8056 -5.5973 -2.9626 39 1 1.6940 -7.8746 -2.0365 40 1 1.6510 -9.3279 -0.0097 41 1 1.6588 -9.5337 2.4183 42 1 1.7811 -7.5393 3.8498 43 1 1.8896 -5.3098 2.8811 44 1 1.1217 -2.7475 1.0610 45 1 2.9048 -2.8136 1.0412 46 1 0.3193 -0.3287 2.2785 47 1 0.8340 -0.8829 6.7273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996549593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:00 Heat of formation + Delta-G solvation = 31.982125 kcal Electronic energy + Delta-G solvation = -29823.448124 eV Core-core repulsion = 25971.067201 eV Total energy + Delta-G solvation = -3852.380922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16202 -41.14148 -39.48247 -37.84520 -36.03346 -34.93410 -34.29345 -33.06874 -31.77540 -31.03518 -29.54881 -28.38628 -27.92616 -25.94306 -25.43929 -24.57242 -23.15902 -22.78993 -21.14914 -20.52529 -19.47457 -18.99742 -18.64525 -17.99147 -17.33345 -17.06011 -16.53536 -16.17124 -15.98697 -15.61197 -15.42936 -15.26524 -15.20323 -14.90078 -14.81612 -14.37811 -14.24951 -14.08970 -13.88845 -13.73609 -13.45929 -13.20757 -12.99532 -12.85330 -12.73038 -12.65102 -12.54156 -12.46048 -12.19391 -11.98854 -11.92218 -11.68656 -11.62306 -11.46435 -11.30700 -11.02490 -10.45151 -9.93731 -9.65100 -9.32866 -9.30073 -8.01044 -5.34552 -0.84617 -0.36467 0.91075 1.33578 1.34995 1.37719 1.44259 1.81100 2.17344 2.47126 2.86356 3.06633 3.27547 3.34929 3.55844 3.56609 3.64327 3.74786 3.82961 3.86370 4.01172 4.11798 4.21855 4.24288 4.36000 4.37694 4.42427 4.48491 4.59111 4.76172 4.77434 4.79548 4.88090 4.95848 4.98201 4.99863 5.03946 5.06907 5.11816 5.19571 5.24974 5.35010 5.36326 5.42982 5.48285 5.50081 5.78664 5.84993 6.22346 6.32938 6.59149 6.97398 7.07806 7.82051 8.01900 9.20182 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009250 B = 0.004665 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.210717 B = 6001.123375 C = 8457.626633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.080 4.080 3 C -0.126 4.126 4 C 0.118 3.882 5 N -0.591 5.591 6 C 0.575 3.425 7 O -0.563 6.563 8 C 0.091 3.909 9 C -0.138 4.138 10 C -0.045 4.045 11 C -0.099 4.099 12 C -0.096 4.096 13 C -0.102 4.102 14 C -0.096 4.096 15 C -0.116 4.116 16 C 0.095 3.905 17 N -0.457 5.457 18 C 0.117 3.883 19 C 0.172 3.828 20 H 0.066 0.934 21 N -0.735 5.735 22 C -0.224 4.224 23 H 0.060 0.940 24 C -0.054 4.054 25 N -0.979 5.979 26 Si 0.938 3.062 27 H -0.285 1.285 28 H -0.294 1.294 29 H -0.250 1.250 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.159 0.841 39 H 0.192 0.808 40 H 0.174 0.826 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.113 0.887 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.369 0.631 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -13.025 -16.029 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.081 4.081 3 C -0.183 4.183 4 C -0.004 4.004 5 N -0.322 5.322 6 C 0.363 3.637 7 O -0.443 6.443 8 C -0.062 4.062 9 C -0.159 4.159 10 C -0.070 4.070 11 C -0.101 4.101 12 C -0.114 4.114 13 C -0.120 4.120 14 C -0.116 4.116 15 C -0.135 4.135 16 C -0.028 4.028 17 N -0.169 5.169 18 C -0.009 4.009 19 C 0.062 3.938 20 H 0.084 0.916 21 N -0.380 5.380 22 C -0.355 4.355 23 H 0.078 0.922 24 C -0.245 4.245 25 N -0.629 5.629 26 Si 0.766 3.234 27 H -0.211 1.211 28 H -0.221 1.221 29 H -0.174 1.174 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.177 0.823 39 H 0.209 0.791 40 H 0.191 0.809 41 H 0.185 0.815 42 H 0.166 0.834 43 H 0.131 0.869 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.205 0.795 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.118 -12.305 -15.902 20.108 hybrid contribution -0.958 -0.095 0.451 1.063 sum -1.076 -12.401 -15.451 19.841 Atomic orbital electron populations 1.21682 0.93788 1.01355 1.02262 1.22027 0.96319 0.96493 0.93271 1.21646 1.01317 0.92787 1.02572 1.22547 1.02026 0.78403 0.97447 1.48369 1.69186 1.06598 1.08038 1.17891 0.76981 0.83680 0.85191 1.90713 1.53391 1.86019 1.14181 1.21316 1.00496 0.94483 0.89936 1.21839 1.00029 0.91966 1.02028 1.21900 0.93477 0.98172 0.93488 1.19318 1.00922 0.95006 0.94862 1.21442 0.98285 0.95709 0.95942 1.21449 0.97042 0.99785 0.93700 1.21297 0.96759 0.91510 1.02032 1.21013 1.00805 0.99286 0.92349 1.19247 1.00277 0.88321 0.94994 1.68142 1.10228 1.26183 1.12384 1.22772 1.01295 0.99403 0.77396 1.21465 0.94717 0.91526 0.86065 0.91605 1.42754 1.12808 1.80614 1.01778 1.18994 0.97275 1.35687 0.83556 0.92225 1.25315 1.01757 1.02679 0.94790 1.69857 1.37681 1.57275 0.98133 0.85669 0.81524 0.78514 0.77647 1.21147 1.22100 1.17446 0.93053 0.89819 0.94092 0.91517 0.90120 0.92960 0.89617 0.89449 0.82345 0.79111 0.80911 0.81517 0.83379 0.86857 0.92366 0.92937 0.79459 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 7.94 71.98 0.57 -3.36 16 2 C -0.08 -2.36 0.87 -50.71 -0.04 -2.40 16 3 C -0.13 -3.12 8.68 71.98 0.62 -2.50 16 4 C 0.12 3.34 5.85 86.93 0.51 3.85 16 5 N -0.59 -20.12 3.31 -814.26 -2.70 -22.81 16 6 C 0.57 20.08 7.84 86.91 0.68 20.77 16 7 O -0.56 -20.70 16.54 -3.74 -0.06 -20.76 16 8 C 0.09 2.95 6.73 42.30 0.28 3.23 16 9 C -0.14 -3.41 9.54 22.36 0.21 -3.20 16 10 C -0.04 -0.84 9.88 22.48 0.22 -0.62 16 11 C -0.10 -2.24 5.75 -21.22 -0.12 -2.37 16 12 C -0.10 -1.46 9.77 22.31 0.22 -1.24 16 13 C -0.10 -1.57 9.96 22.07 0.22 -1.35 16 14 C -0.10 -2.09 9.94 22.04 0.22 -1.87 16 15 C -0.12 -3.50 9.99 22.38 0.22 -3.28 16 16 C 0.09 2.94 6.61 40.47 0.27 3.21 16 17 N -0.46 -16.11 6.76 -177.77 -1.20 -17.31 16 18 C 0.12 4.48 4.83 86.73 0.42 4.90 16 19 C 0.17 6.55 2.85 46.18 0.13 6.68 16 20 H 0.07 2.59 8.02 -2.39 -0.02 2.57 16 21 N -0.74 -33.61 4.88 -317.32 -1.55 -35.15 16 22 C -0.22 -12.47 10.46 84.03 0.88 -11.60 16 23 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 24 C -0.05 -3.11 5.50 84.86 0.47 -2.65 16 25 N -0.98 -61.80 13.97 21.65 0.30 -61.50 16 26 Si 0.94 45.11 27.74 68.60 1.90 47.01 16 27 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 30 H 0.05 1.65 6.34 -2.39 -0.02 1.63 16 31 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.04 1.32 7.91 -2.39 -0.02 1.30 16 33 H 0.07 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.05 1.47 8.14 -2.38 -0.02 1.46 16 36 H 0.09 2.20 7.99 -2.39 -0.02 2.18 16 37 H 0.09 2.34 7.95 -2.39 -0.02 2.32 16 38 H 0.16 3.46 7.60 -2.91 -0.02 3.44 16 39 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.11 4.03 8.06 -2.91 -0.02 4.00 16 44 H 0.06 2.51 7.29 -2.39 -0.02 2.49 16 45 H 0.05 2.16 7.52 -2.39 -0.02 2.14 16 46 H 0.37 16.36 3.12 -92.71 -0.29 16.07 16 47 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -74.67 379.79 3.32 -71.35 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: 0.64 Total: 32.95 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 5.98 Total: 6.22 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -5.14 Total: -136.77 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.76 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Total: -74.67 3.32 -71.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996549593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.332 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds