Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30821 * 119.22623 * 2 1 4 4 C 1.33789 * 121.71694 * 179.97438 * 3 2 1 5 5 C 1.40539 * 120.83072 * 180.02562 * 4 3 2 6 6 C 1.36130 * 119.81251 * 179.97438 * 5 4 3 7 7 C 1.39348 * 121.10152 * 0.02562 * 6 5 4 8 8 C 1.36141 * 120.82945 * 359.96576 * 7 6 5 9 9 C 1.40551 * 119.62014 * 0.06037 * 8 7 6 10 10 C 1.40493 * 121.21734 * 180.02562 * 9 8 7 11 11 C 1.39052 * 117.95906 * 179.97438 * 10 9 8 12 12 C 1.47759 * 120.26364 * 180.02562 * 11 10 9 13 13 O 1.21566 * 119.99699 * 228.68525 * 12 11 10 14 14 N 1.34776 * 120.00575 * 48.68413 * 12 11 10 15 15 C 1.46929 * 120.62751 * 5.50992 * 14 12 11 16 16 C 1.53627 * 108.54251 * 126.36799 * 15 14 12 17 17 C 1.53037 * 109.24036 * 54.85849 * 16 15 14 18 18 N 1.46503 * 109.45692 * 178.49354 * 17 16 15 19 19 C 1.36937 * 119.99489 * 275.06352 * 18 17 16 20 20 H 1.07998 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99560 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46843 * 89.99847 * 23 21 19 25 25 H 1.48494 * 109.47057 * 209.99589 * 23 21 19 26 26 H 1.48500 * 109.47238 * 330.00312 * 23 21 19 27 27 C 1.53045 * 109.53491 * 298.50697 * 17 16 15 28 28 C 1.46922 * 120.63525 * 185.78762 * 14 12 11 29 29 H 1.09001 * 109.46934 * 95.45260 * 1 2 3 30 30 H 1.08998 * 109.47467 * 215.45075 * 1 2 3 31 31 H 1.08998 * 109.47383 * 335.46105 * 1 2 3 32 32 H 1.07993 * 120.09290 * 359.95861 * 5 4 3 33 33 H 1.08005 * 119.45130 * 179.72673 * 6 5 4 34 34 H 1.07998 * 119.58536 * 179.97438 * 7 6 5 35 35 H 1.08002 * 120.18588 * 180.02562 * 8 7 6 36 36 H 1.07997 * 121.02056 * 359.92746 * 10 9 8 37 37 H 1.09002 * 109.58291 * 246.20132 * 15 14 12 38 38 H 1.08995 * 109.58553 * 6.62484 * 15 14 12 39 39 H 1.08997 * 109.63323 * 294.86424 * 16 15 14 40 40 H 1.09005 * 109.42810 * 174.72687 * 16 15 14 41 41 H 1.08999 * 109.46561 * 58.53055 * 17 16 15 42 42 H 0.96997 * 120.00006 * 95.06744 * 18 17 16 43 43 H 0.97003 * 119.99783 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.49698 * 301.41689 * 27 17 16 45 45 H 1.09005 * 109.49678 * 181.32135 * 27 17 16 46 46 H 1.09004 * 109.58635 * 353.37580 * 28 14 12 47 47 H 1.08994 * 109.58571 * 113.65422 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1495 2.4368 0.0010 6 6 5.5104 2.4717 0.0021 7 6 6.2606 1.2975 0.0021 8 6 5.6511 0.0801 0.0018 9 6 4.2476 0.0060 0.0001 10 6 3.5838 -1.2323 0.0003 11 6 2.1933 -1.2266 -0.0009 12 6 1.4434 -2.4997 -0.0002 13 8 0.5367 -2.6715 -0.7915 14 7 1.7645 -3.4706 0.8777 15 6 2.7750 -3.2349 1.9180 16 6 2.1609 -3.5810 3.2829 17 6 1.6210 -5.0125 3.2446 18 7 1.0663 -5.3601 4.5553 19 6 1.8882 -5.8348 5.5424 20 1 2.9452 -5.9525 5.3548 21 6 1.3627 -6.1647 6.7842 22 7 0.0745 -6.0207 7.0129 23 14 2.4837 -6.8129 8.1305 24 1 3.0057 -5.6757 8.9301 25 1 1.7181 -7.7289 9.0136 26 1 3.6184 -7.5493 7.5179 27 6 0.5238 -5.1173 2.1827 28 6 1.1154 -4.7869 0.8088 29 1 -0.3633 -0.0977 -1.0230 30 1 -0.3634 -0.8371 0.5960 31 1 -0.3634 0.9348 0.4268 32 1 3.5842 3.3569 0.0004 33 1 6.0171 3.4255 -0.0020 34 1 7.3391 1.3538 0.0025 35 1 6.2428 -0.8234 0.0022 36 1 4.1366 -2.1601 0.0005 37 1 3.6434 -3.8675 1.7338 38 1 3.0745 -2.1870 1.9056 39 1 1.3467 -2.8908 3.5038 40 1 2.9258 -3.5012 4.0554 41 1 2.4307 -5.6997 2.9993 42 1 0.1170 -5.2540 4.7238 43 1 -0.2927 -6.2509 7.8807 44 1 -0.2749 -4.4127 2.4140 45 1 0.1235 -6.1312 2.1721 46 1 0.3194 -4.7633 0.0644 47 1 1.8506 -5.5430 0.5337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996643250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = 31.712425 kcal Electronic energy + Delta-G solvation = -29077.755527 eV Core-core repulsion = 25225.362910 eV Total energy + Delta-G solvation = -3852.392617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39198 -39.91056 -37.77326 -37.07197 -34.69626 -33.86181 -32.23010 -32.06486 -31.07747 -30.22480 -29.21640 -28.02537 -25.60619 -24.32585 -23.25277 -22.83535 -22.61273 -22.25088 -20.68735 -19.42307 -18.42616 -17.48453 -17.14076 -16.91443 -16.26265 -15.82290 -15.32806 -14.87003 -14.84231 -14.64726 -14.45138 -14.05440 -13.80361 -13.67378 -13.50831 -13.38840 -13.30713 -13.20811 -12.93485 -12.45771 -12.29716 -12.05096 -11.97107 -11.77479 -11.62919 -11.55998 -11.06085 -10.94500 -10.86946 -10.72382 -10.52152 -10.27504 -10.16381 -9.87722 -9.72196 -9.61738 -8.97975 -8.93850 -8.60496 -8.52724 -7.02295 -5.81502 -3.11016 -0.02391 0.39876 1.59809 2.34279 2.73583 3.01469 3.39514 3.44603 3.46635 3.77696 3.88684 4.17801 4.27321 4.38918 4.49796 4.53836 4.66655 4.78872 4.91049 5.00481 5.08933 5.25536 5.27234 5.31912 5.34065 5.46418 5.47628 5.51681 5.56637 5.57974 5.60057 5.66025 5.75540 5.87363 5.92285 5.97015 5.99477 6.08198 6.16235 6.22727 6.30434 6.32910 6.45088 6.49760 6.55770 6.82800 6.98059 7.34825 7.64079 7.65985 8.05691 8.36607 9.47897 10.05043 10.39645 11.40980 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002825 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.327917 B = 9909.992940 C =11075.941078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.207 3.793 3 N -0.479 5.479 4 C 0.146 3.854 5 C -0.099 4.099 6 C -0.093 4.093 7 C -0.124 4.124 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.017 4.017 11 C -0.174 4.174 12 C 0.565 3.435 13 O -0.534 6.534 14 N -0.597 5.597 15 C 0.101 3.899 16 C -0.150 4.150 17 C 0.179 3.821 18 N -0.724 5.724 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.139 4.139 28 C 0.116 3.884 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.305 14.030 -17.202 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.054 3.946 3 N -0.188 5.188 4 C 0.025 3.975 5 C -0.118 4.118 6 C -0.113 4.113 7 C -0.142 4.142 8 C -0.104 4.104 9 C -0.118 4.118 10 C -0.043 4.043 11 C -0.180 4.180 12 C 0.352 3.648 13 O -0.412 6.412 14 N -0.330 5.330 15 C -0.022 4.022 16 C -0.191 4.191 17 C 0.069 3.931 18 N -0.364 5.364 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.178 4.178 28 C -0.006 4.006 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.552 14.670 -17.481 24.740 hybrid contribution 0.937 -1.057 1.064 1.768 sum 10.489 13.614 -16.417 23.767 Atomic orbital electron populations 1.20842 0.87676 1.03682 1.04145 1.21457 0.97371 0.86286 0.89514 1.67859 1.08302 1.27950 1.14669 1.18984 0.89086 0.93049 0.96408 1.20817 0.94222 0.96391 1.00371 1.20972 0.93687 0.98854 0.97774 1.20930 1.00460 0.92267 1.00504 1.21048 0.92409 0.98764 0.98191 1.18757 0.94979 0.93530 1.04513 1.21983 0.92920 0.97847 0.91545 1.20796 0.94405 0.95283 1.07483 1.18001 0.83015 0.82801 0.80993 1.90779 1.29968 1.80411 1.39996 1.48115 1.40909 1.13184 1.30764 1.22153 0.90505 1.01314 0.88262 1.22758 1.01239 1.01047 0.94051 1.20163 0.94056 0.92499 0.86384 1.42432 1.08448 1.77381 1.08137 1.19219 0.91258 1.35323 0.91432 0.91186 1.24756 0.95927 1.02270 0.97916 1.69664 1.10755 1.54407 1.23126 0.86208 0.79551 0.78379 0.82152 1.21724 1.21762 1.20746 1.22207 0.99445 1.02367 0.93772 1.21679 0.97743 0.82328 0.98839 0.89181 0.90173 0.90223 0.84571 0.85172 0.85325 0.84959 0.83549 0.91225 0.90479 0.92116 0.90600 0.93387 0.78227 0.93455 0.91701 0.90380 0.89097 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 8.96 36.01 0.32 -0.96 16 2 C 0.21 2.77 6.82 -82.15 -0.56 2.21 16 3 N -0.48 -6.42 10.20 -6.94 -0.07 -6.49 16 4 C 0.15 1.76 6.61 -84.79 -0.56 1.20 16 5 C -0.10 -0.95 9.97 -39.47 -0.39 -1.34 16 6 C -0.09 -0.68 9.94 -39.93 -0.40 -1.08 16 7 C -0.12 -0.87 9.96 -39.92 -0.40 -1.27 16 8 C -0.09 -0.70 9.77 -39.46 -0.39 -1.08 16 9 C -0.12 -1.25 5.74 -106.81 -0.61 -1.86 16 10 C -0.02 -0.18 7.43 -38.43 -0.29 -0.47 16 11 C -0.17 -2.26 4.83 -104.83 -0.51 -2.77 16 12 C 0.56 8.07 6.31 -12.37 -0.08 8.00 16 13 O -0.53 -8.88 15.16 5.31 0.08 -8.80 16 14 N -0.60 -8.05 2.97 -173.65 -0.52 -8.57 16 15 C 0.10 1.28 5.33 -3.48 -0.02 1.26 16 16 C -0.15 -2.46 5.67 -26.39 -0.15 -2.61 16 17 C 0.18 3.31 2.73 -67.89 -0.19 3.12 16 18 N -0.72 -17.42 5.12 -53.38 -0.27 -17.69 16 19 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 23 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 28 C 0.12 1.57 6.44 -3.72 -0.02 1.54 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.03 7.01 -51.93 -0.36 0.67 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 34 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.15 1.25 7.39 -52.49 -0.39 0.86 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.92 5.14 -51.93 -0.27 0.65 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 42 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -32.35 380.79 -10.70 -43.05 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.74 Total: 8.37 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -4.62 Total: -5.51 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.13 Total: -59.73 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.35 -10.70 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996643250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.767 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds