Wall clock time and date at job start Tue Mar 31 2020 22:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30821 * 119.22623 * 2 1 4 4 C 1.33789 * 121.71694 * 179.97438 * 3 2 1 5 5 C 1.40539 * 120.83072 * 180.02562 * 4 3 2 6 6 C 1.36130 * 119.81251 * 179.97438 * 5 4 3 7 7 C 1.39348 * 121.10152 * 0.02562 * 6 5 4 8 8 C 1.36141 * 120.82945 * 359.96576 * 7 6 5 9 9 C 1.40551 * 119.62014 * 0.06037 * 8 7 6 10 10 C 1.40493 * 121.21734 * 180.02562 * 9 8 7 11 11 C 1.39052 * 117.95906 * 179.97438 * 10 9 8 12 12 C 1.47759 * 120.26364 * 180.02562 * 11 10 9 13 13 O 1.21566 * 119.99699 * 228.68525 * 12 11 10 14 14 N 1.34776 * 120.00575 * 48.68413 * 12 11 10 15 15 C 1.46929 * 120.62751 * 5.50992 * 14 12 11 16 16 C 1.53627 * 108.54251 * 126.36799 * 15 14 12 17 17 C 1.53037 * 109.24036 * 54.85849 * 16 15 14 18 18 N 1.46503 * 109.45692 * 178.49354 * 17 16 15 19 19 C 1.36937 * 119.99489 * 275.06352 * 18 17 16 20 20 H 1.07998 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31621 * 119.99560 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00121 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46843 * 89.99847 * 23 21 19 25 25 H 1.48494 * 109.47057 * 209.99589 * 23 21 19 26 26 H 1.48500 * 109.47238 * 330.00312 * 23 21 19 27 27 C 1.53045 * 109.53491 * 298.50697 * 17 16 15 28 28 C 1.46922 * 120.63525 * 185.78762 * 14 12 11 29 29 H 1.09001 * 109.46934 * 95.45260 * 1 2 3 30 30 H 1.08998 * 109.47467 * 215.45075 * 1 2 3 31 31 H 1.08998 * 109.47383 * 335.46105 * 1 2 3 32 32 H 1.07993 * 120.09290 * 359.95861 * 5 4 3 33 33 H 1.08005 * 119.45130 * 179.72673 * 6 5 4 34 34 H 1.07998 * 119.58536 * 179.97438 * 7 6 5 35 35 H 1.08002 * 120.18588 * 180.02562 * 8 7 6 36 36 H 1.07997 * 121.02056 * 359.92746 * 10 9 8 37 37 H 1.09002 * 109.58291 * 246.20132 * 15 14 12 38 38 H 1.08995 * 109.58553 * 6.62484 * 15 14 12 39 39 H 1.08997 * 109.63323 * 294.86424 * 16 15 14 40 40 H 1.09005 * 109.42810 * 174.72687 * 16 15 14 41 41 H 1.08999 * 109.46561 * 58.53055 * 17 16 15 42 42 H 0.96997 * 120.00006 * 95.06744 * 18 17 16 43 43 H 0.97003 * 119.99783 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.49698 * 301.41689 * 27 17 16 45 45 H 1.09005 * 109.49678 * 181.32135 * 27 17 16 46 46 H 1.09004 * 109.58635 * 353.37580 * 28 14 12 47 47 H 1.08994 * 109.58571 * 113.65422 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1495 2.4368 0.0010 6 6 5.5104 2.4717 0.0021 7 6 6.2606 1.2975 0.0021 8 6 5.6511 0.0801 0.0018 9 6 4.2476 0.0060 0.0001 10 6 3.5838 -1.2323 0.0003 11 6 2.1933 -1.2266 -0.0009 12 6 1.4434 -2.4997 -0.0002 13 8 0.5367 -2.6715 -0.7915 14 7 1.7645 -3.4706 0.8777 15 6 2.7750 -3.2349 1.9180 16 6 2.1609 -3.5810 3.2829 17 6 1.6210 -5.0125 3.2446 18 7 1.0663 -5.3601 4.5553 19 6 1.8882 -5.8348 5.5424 20 1 2.9452 -5.9525 5.3548 21 6 1.3627 -6.1647 6.7842 22 7 0.0745 -6.0207 7.0129 23 14 2.4837 -6.8129 8.1305 24 1 3.0057 -5.6757 8.9301 25 1 1.7181 -7.7289 9.0136 26 1 3.6184 -7.5493 7.5179 27 6 0.5238 -5.1173 2.1827 28 6 1.1154 -4.7869 0.8088 29 1 -0.3633 -0.0977 -1.0230 30 1 -0.3634 -0.8371 0.5960 31 1 -0.3634 0.9348 0.4268 32 1 3.5842 3.3569 0.0004 33 1 6.0171 3.4255 -0.0020 34 1 7.3391 1.3538 0.0025 35 1 6.2428 -0.8234 0.0022 36 1 4.1366 -2.1601 0.0005 37 1 3.6434 -3.8675 1.7338 38 1 3.0745 -2.1870 1.9056 39 1 1.3467 -2.8908 3.5038 40 1 2.9258 -3.5012 4.0554 41 1 2.4307 -5.6997 2.9993 42 1 0.1170 -5.2540 4.7238 43 1 -0.2927 -6.2509 7.8807 44 1 -0.2749 -4.4127 2.4140 45 1 0.1235 -6.1312 2.1721 46 1 0.3194 -4.7633 0.0644 47 1 1.8506 -5.5430 0.5337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996643250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:32 Heat of formation + Delta-G solvation = 12.482664 kcal Electronic energy + Delta-G solvation = -29078.589392 eV Core-core repulsion = 25225.362910 eV Total energy + Delta-G solvation = -3853.226482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.26533 -40.92948 -38.90754 -38.01698 -36.23084 -34.84491 -33.73183 -33.02374 -32.20378 -31.28871 -30.70988 -28.87303 -26.90333 -25.64293 -24.46248 -24.07174 -23.57141 -23.06306 -21.93797 -20.60980 -19.33874 -19.05455 -18.34205 -17.91630 -17.21663 -16.71493 -16.64342 -16.32757 -15.68151 -15.51029 -15.43580 -15.38462 -15.31061 -14.98517 -14.73937 -14.50111 -14.24978 -14.08518 -14.01322 -13.73805 -13.35576 -13.21278 -13.14005 -12.84355 -12.69613 -12.64459 -12.41783 -12.35282 -12.24672 -12.15285 -12.02622 -11.73329 -11.54712 -11.31984 -11.20274 -10.87751 -10.55282 -9.82527 -9.67101 -9.25211 -9.00242 -7.92703 -5.21553 -0.77666 -0.40282 0.86574 1.41456 1.48714 1.49900 1.58224 1.76785 2.05538 2.57356 3.01059 3.06202 3.26161 3.40893 3.51843 3.57409 3.79823 3.81808 3.87593 3.92399 4.07317 4.14584 4.22581 4.30110 4.35697 4.36768 4.37896 4.50148 4.59142 4.61565 4.68605 4.72321 4.75950 4.82871 4.83878 4.88267 5.00519 5.02780 5.05686 5.12789 5.28888 5.37044 5.43426 5.47062 5.48883 5.53824 5.58690 5.87064 6.25204 6.29101 6.79816 6.96857 7.34806 8.10772 8.33304 9.31089 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002825 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.327917 B = 9909.992940 C =11075.941078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.186 3.814 3 N -0.499 5.499 4 C 0.120 3.880 5 C -0.124 4.124 6 C -0.078 4.078 7 C -0.119 4.119 8 C -0.087 4.087 9 C -0.130 4.130 10 C -0.003 4.003 11 C -0.199 4.199 12 C 0.569 3.431 13 O -0.564 6.564 14 N -0.597 5.597 15 C 0.112 3.888 16 C -0.141 4.141 17 C 0.175 3.825 18 N -0.739 5.739 19 C -0.233 4.233 20 H 0.082 0.918 21 C -0.080 4.080 22 N -0.973 5.973 23 Si 0.971 3.029 24 H -0.289 1.289 25 H -0.300 1.300 26 H -0.265 1.265 27 C -0.129 4.129 28 C 0.123 3.877 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.174 0.826 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.369 0.631 43 H 0.249 0.751 44 H 0.046 0.954 45 H 0.076 0.924 46 H 0.088 0.912 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.499 14.456 -18.280 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.033 3.967 3 N -0.209 5.209 4 C -0.001 4.001 5 C -0.143 4.143 6 C -0.097 4.097 7 C -0.137 4.137 8 C -0.106 4.106 9 C -0.132 4.132 10 C -0.029 4.029 11 C -0.204 4.204 12 C 0.357 3.643 13 O -0.444 6.444 14 N -0.328 5.328 15 C -0.010 4.010 16 C -0.181 4.181 17 C 0.066 3.934 18 N -0.378 5.378 19 C -0.365 4.365 20 H 0.099 0.901 21 C -0.272 4.272 22 N -0.624 5.624 23 Si 0.800 3.200 24 H -0.217 1.217 25 H -0.227 1.227 26 H -0.190 1.190 27 C -0.168 4.168 28 C 0.001 3.999 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.179 0.821 34 H 0.181 0.819 35 H 0.179 0.821 36 H 0.191 0.809 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.201 0.799 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.106 0.894 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 13.800 15.111 -18.602 27.655 hybrid contribution -0.234 -1.051 1.320 1.704 sum 13.565 14.059 -17.282 26.084 Atomic orbital electron populations 1.20755 0.87852 1.03346 1.03797 1.21542 0.97637 0.86834 0.90649 1.67824 1.09549 1.28036 1.15471 1.19446 0.88853 0.94719 0.97088 1.21011 0.95456 0.95771 1.02036 1.21413 0.92781 1.00680 0.94847 1.21403 1.02222 0.91550 0.98485 1.21418 0.91212 1.00603 0.97358 1.19004 0.96360 0.92920 1.04879 1.22279 0.92021 0.99076 0.89526 1.20664 0.95387 0.94164 1.10198 1.18190 0.82509 0.83085 0.80489 1.90755 1.31341 1.80945 1.41323 1.48137 1.40971 1.13033 1.30703 1.22131 0.90638 1.02785 0.85494 1.22540 1.00288 0.98914 0.96406 1.20420 0.94835 0.93585 0.84520 1.42688 1.07684 1.77561 1.09850 1.19648 0.91931 1.33151 0.91801 0.90063 1.25568 0.97218 1.03908 1.00459 1.69832 1.12643 1.56709 1.23234 0.85172 0.78032 0.77539 0.79242 1.21665 1.22724 1.18981 1.22068 0.98266 1.01869 0.94573 1.21627 0.98415 0.83051 0.96790 0.89352 0.91575 0.89572 0.84334 0.82067 0.81920 0.82115 0.80891 0.88053 0.89272 0.94385 0.91526 0.92551 0.79947 0.94236 0.93496 0.90540 0.89370 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.59 8.96 71.24 0.64 -1.95 16 2 C 0.19 5.13 6.82 43.27 0.29 5.43 16 3 N -0.50 -13.67 10.20 -175.86 -1.79 -15.47 16 4 C 0.12 2.80 6.61 40.29 0.27 3.07 16 5 C -0.12 -2.19 9.97 22.34 0.22 -1.97 16 6 C -0.08 -0.87 9.94 22.05 0.22 -0.65 16 7 C -0.12 -1.14 9.96 22.05 0.22 -0.92 16 8 C -0.09 -1.08 9.77 22.35 0.22 -0.86 16 9 C -0.13 -2.51 5.74 -21.28 -0.12 -2.63 16 10 C 0.00 -0.06 7.43 23.02 0.17 0.11 16 11 C -0.20 -5.07 4.83 -20.00 -0.10 -5.16 16 12 C 0.57 16.04 6.31 86.76 0.55 16.59 16 13 O -0.56 -19.03 15.16 -3.92 -0.06 -19.09 16 14 N -0.60 -15.24 2.97 -821.58 -2.44 -17.68 16 15 C 0.11 2.58 5.33 86.51 0.46 3.04 16 16 C -0.14 -4.52 5.67 30.82 0.17 -4.34 16 17 C 0.17 6.33 2.73 45.02 0.12 6.45 16 18 N -0.74 -35.98 5.12 -322.80 -1.65 -37.63 16 19 C -0.23 -12.43 9.93 84.03 0.83 -11.60 16 20 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 22 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 23 Si 0.97 45.17 29.55 68.60 2.03 47.19 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 C -0.13 -4.07 5.55 30.67 0.17 -3.90 16 28 C 0.12 3.16 6.44 86.36 0.56 3.71 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 1.84 7.01 -2.39 -0.02 1.82 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 36 H 0.17 2.28 7.39 -2.91 -0.02 2.26 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 1.91 5.14 -2.39 -0.01 1.90 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 42 H 0.37 19.89 7.80 -92.71 -0.72 19.16 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 45 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 46 H 0.09 2.37 7.00 -2.38 -0.02 2.35 16 47 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -72.83 380.79 2.00 -70.83 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.27 Total: 30.56 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.36 Total: 0.41 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -5.60 Total: -129.90 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.06 Total: -19.09 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.83 2.00 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996643250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.313 kcal (2) G-P(sol) polarization free energy of solvation -72.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds