Wall clock time and date at job start Tue Mar 31 2020 23:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 110.88408 * 2 1 4 4 C 1.55126 * 111.19501 * 236.06674 * 2 1 3 5 5 N 1.47425 * 104.71923 * 279.19185 * 4 2 1 6 6 C 1.34774 * 125.64984 * 155.82052 * 5 4 2 7 7 O 1.21613 * 119.99987 * 4.56683 * 6 5 4 8 8 C 1.47437 * 120.00457 * 184.57578 * 6 5 4 9 9 C 1.38957 * 121.17105 * 313.08613 * 8 6 5 10 10 N 1.32191 * 121.31895 * 179.97438 * 9 8 6 11 11 C 1.31202 * 123.69864 * 359.68140 * 10 9 8 12 12 C 1.40391 * 120.91245 * 0.61040 * 11 10 9 13 13 C 1.40394 * 122.14964 * 179.70452 * 12 11 10 14 14 C 1.36223 * 119.48704 * 179.72113 * 13 12 11 15 15 C 1.39296 * 121.10844 * 0.02562 * 14 13 12 16 16 C 1.36438 * 120.94456 * 359.97438 * 15 14 13 17 17 C 1.39688 * 119.43575 * 0.02562 * 16 15 14 18 18 C 1.47018 * 108.70448 * 335.54743 * 5 4 2 19 19 C 1.54331 * 107.26978 * 1.29252 * 18 5 4 20 20 H 1.08993 * 110.71591 * 263.82244 * 19 18 5 21 21 N 1.46502 * 110.71661 * 140.72981 * 19 18 5 22 22 C 1.36945 * 119.99763 * 86.45708 * 21 19 18 23 23 H 1.07994 * 119.99855 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99738 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00160 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99838 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47123 * 90.00198 * 26 24 22 28 28 H 1.48499 * 109.47016 * 210.00045 * 26 24 22 29 29 H 1.48499 * 109.47164 * 330.00005 * 26 24 22 30 30 H 1.08999 * 109.46981 * 296.11686 * 1 2 3 31 31 H 1.08997 * 109.47079 * 56.12126 * 1 2 3 32 32 H 1.08998 * 109.46645 * 176.12153 * 1 2 3 33 33 H 1.08999 * 109.47048 * 183.88634 * 3 2 1 34 34 H 1.09005 * 109.46480 * 303.87772 * 3 2 1 35 35 H 1.08998 * 109.47641 * 63.87742 * 3 2 1 36 36 H 1.08991 * 110.50148 * 160.34584 * 4 2 1 37 37 H 1.09006 * 110.33991 * 37.94975 * 4 2 1 38 38 H 1.08006 * 119.33487 * 359.97438 * 9 8 6 39 39 H 1.08000 * 119.54496 * 180.30900 * 11 10 9 40 40 H 1.08003 * 120.25271 * 359.74735 * 13 12 11 41 41 H 1.08003 * 119.44750 * 179.97438 * 14 13 12 42 42 H 1.08000 * 119.52805 * 179.97438 * 15 14 13 43 43 H 1.07995 * 120.28160 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.87988 * 120.70649 * 18 5 4 45 45 H 1.08992 * 109.88690 * 241.72022 * 18 5 4 46 46 H 0.96996 * 120.00317 * 266.44747 * 21 19 18 47 47 H 0.96995 * 120.00519 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0909 -0.8074 -1.2000 5 7 2.0140 -2.2161 -0.7724 6 6 1.9473 -3.2835 -1.5925 7 8 2.0311 -3.1316 -2.7962 8 6 1.7726 -4.6353 -1.0306 9 6 2.5403 -5.0733 0.0416 10 7 2.3857 -6.2845 0.5480 11 6 1.5128 -7.1552 0.0993 12 6 0.6767 -6.8450 -0.9849 13 6 -0.2619 -7.7588 -1.4900 14 6 -1.0500 -7.3986 -2.5410 15 6 -0.9403 -6.1383 -3.1242 16 6 -0.0390 -5.2259 -2.6586 17 6 0.7849 -5.5626 -1.5820 18 6 2.0287 -2.2643 0.6970 19 6 2.0862 -0.8073 1.2026 20 1 3.1133 -0.5154 1.4212 21 7 1.2376 -0.6349 2.3843 22 6 1.7370 -0.9033 3.6309 23 1 2.7562 -1.2424 3.7428 24 6 0.9330 -0.7394 4.7506 25 7 -0.3090 -0.3256 4.6142 26 14 1.6139 -1.1062 6.4509 27 1 2.2240 0.1243 7.0158 28 1 0.5134 -1.5644 7.3365 29 1 2.6454 -2.1698 6.3522 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5728 -0.8532 32 1 -0.3632 -1.0253 -0.0695 33 1 3.1629 1.4035 -0.0697 34 1 1.6697 1.9731 -0.8533 35 1 1.7823 1.9303 0.9226 36 1 3.1253 -0.5271 -1.3986 37 1 1.4765 -0.6457 -2.0857 38 1 3.2780 -4.4108 0.4697 39 1 1.4399 -8.1258 0.5673 40 1 -0.3585 -8.7396 -1.0483 41 1 -1.7716 -8.1022 -2.9293 42 1 -1.5778 -5.8797 -3.9567 43 1 0.0367 -4.2517 -3.1185 44 1 1.1220 -2.7475 1.0611 45 1 2.9050 -2.8134 1.0412 46 1 0.3221 -0.3305 2.2837 47 1 -0.8706 -0.2108 5.3966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996664905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:05 Heat of formation + Delta-G solvation = 40.708859 kcal Electronic energy + Delta-G solvation = -29710.509752 eV Core-core repulsion = 25858.507249 eV Total energy + Delta-G solvation = -3852.002503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.99949 -39.80383 -37.90985 -37.44718 -34.19730 -33.39960 -32.68231 -31.30611 -30.86439 -29.93339 -27.66030 -27.04415 -26.57496 -24.65305 -23.98636 -23.58465 -22.75832 -21.43225 -19.50280 -18.76047 -18.26506 -17.57219 -17.27295 -16.96815 -16.08828 -15.73937 -15.59938 -14.84748 -14.64858 -14.30484 -14.21161 -14.06329 -13.97973 -13.82076 -13.50532 -13.13760 -12.88562 -12.72822 -12.51785 -12.31509 -12.22088 -12.08786 -11.88391 -11.59042 -11.43991 -11.29172 -11.06861 -10.92337 -10.63455 -10.54427 -10.25915 -10.23775 -10.09215 -9.91145 -9.68784 -9.40559 -9.23500 -9.02088 -8.43764 -8.19934 -7.11704 -5.87582 -3.18102 0.04072 0.76218 1.57533 2.69501 2.92493 3.15281 3.38522 3.44881 3.45737 3.93333 4.21715 4.35956 4.46367 4.52194 4.56163 4.69314 4.71712 4.89274 5.00254 5.02706 5.08872 5.15057 5.37358 5.46110 5.49038 5.54999 5.58640 5.64831 5.74212 5.78184 5.79988 5.89401 5.92273 5.99325 6.08261 6.17431 6.20117 6.25019 6.29688 6.32931 6.36456 6.41556 6.54483 6.59540 6.64110 6.70190 6.85198 7.61070 7.66239 7.82631 8.19688 8.30658 9.42940 9.96179 10.31122 11.34461 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.003802 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.018947 B = 7362.837012 C = 8851.208721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.580 3.420 7 O -0.544 6.544 8 C -0.161 4.161 9 C 0.120 3.880 10 N -0.489 5.489 11 C 0.167 3.833 12 C -0.118 4.118 13 C -0.085 4.085 14 C -0.122 4.122 15 C -0.096 4.096 16 C -0.103 4.103 17 C 0.011 3.989 18 C 0.068 3.932 19 C 0.182 3.818 20 H 0.067 0.933 21 N -0.710 5.710 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.139 0.861 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.390 0.610 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.391 -9.930 -14.257 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.186 4.186 4 C -0.004 4.004 5 N -0.334 5.334 6 C 0.367 3.633 7 O -0.423 6.423 8 C -0.165 4.165 9 C -0.023 4.023 10 N -0.196 5.196 11 C -0.005 4.005 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.140 4.140 15 C -0.115 4.115 16 C -0.121 4.121 17 C 0.006 3.994 18 C -0.057 4.057 19 C 0.069 3.931 20 H 0.085 0.915 21 N -0.352 5.352 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.180 0.820 39 H 0.183 0.817 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.227 0.773 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.108 -10.003 -14.036 17.271 hybrid contribution -0.516 0.000 0.378 0.639 sum 0.592 -10.002 -13.658 16.939 Atomic orbital electron populations 1.21648 0.93527 1.01780 1.02018 1.22025 0.96532 0.95425 0.94747 1.21648 1.00268 0.94489 1.02245 1.22395 1.00776 0.79511 0.97670 1.48431 1.70795 1.05920 1.08220 1.17484 0.76999 0.83163 0.85607 1.90765 1.51478 1.85917 1.14173 1.21843 1.00331 0.95153 0.99220 1.22922 0.96843 0.92285 0.90286 1.67136 1.19756 1.03050 1.29638 1.23271 0.88383 0.98227 0.90641 1.18972 0.99771 0.94475 0.98824 1.20971 0.94448 0.98777 0.96291 1.20935 0.99666 0.96747 0.96638 1.21068 0.97578 0.93437 0.99463 1.21088 0.94732 1.00903 0.95357 1.18822 0.94050 0.91901 0.94657 1.23557 1.01721 1.03269 0.77190 1.21204 0.95580 0.89386 0.86935 0.91473 1.42528 1.13164 1.79213 1.00325 1.19253 0.96811 1.38317 0.83616 0.90980 1.24738 0.95928 1.01659 0.97958 1.69649 1.06667 1.52221 1.29161 0.86206 0.77764 0.77948 0.84369 1.21614 1.21745 1.20580 0.90816 0.93238 0.92843 0.92740 0.93047 0.91247 0.91320 0.90739 0.82009 0.81732 0.84693 0.85467 0.85395 0.84352 0.90703 0.92071 0.77309 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.95 37.16 0.30 -1.81 16 2 C -0.09 -1.32 0.87 -152.24 -0.13 -1.45 16 3 C -0.13 -1.76 8.68 37.16 0.32 -1.44 16 4 C 0.12 1.74 5.83 -2.41 -0.01 1.73 16 5 N -0.60 -9.65 3.31 -171.64 -0.57 -10.22 16 6 C 0.58 9.76 7.02 -12.52 -0.09 9.67 16 7 O -0.54 -10.17 15.82 5.27 0.08 -10.08 16 8 C -0.16 -2.54 5.60 -102.66 -0.57 -3.11 16 9 C 0.12 1.83 9.73 -17.13 -0.17 1.66 16 10 N -0.49 -7.16 10.22 -12.58 -0.13 -7.29 16 11 C 0.17 2.00 11.00 -17.01 -0.19 1.82 16 12 C -0.12 -1.46 5.74 -106.89 -0.61 -2.07 16 13 C -0.09 -0.80 9.82 -39.50 -0.39 -1.18 16 14 C -0.12 -1.09 9.94 -39.91 -0.40 -1.49 16 15 C -0.10 -1.00 9.96 -39.84 -0.40 -1.40 16 16 C -0.10 -1.38 9.31 -39.69 -0.37 -1.75 16 17 C 0.01 0.16 5.90 -104.74 -0.62 -0.46 16 18 C 0.07 1.17 5.08 -3.06 -0.02 1.16 16 19 C 0.18 3.30 2.84 -66.09 -0.19 3.12 16 20 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 21 N -0.71 -16.27 5.08 -51.65 -0.26 -16.54 16 22 C -0.25 -6.45 9.98 -15.06 -0.15 -6.60 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 25 N -0.93 -26.75 13.06 55.49 0.72 -26.03 16 26 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H 0.07 1.33 6.35 -51.93 -0.33 1.00 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.91 7.91 -51.93 -0.41 0.50 16 33 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 37 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 38 H 0.16 2.32 5.91 -52.48 -0.31 2.01 16 39 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.14 1.99 6.50 -52.49 -0.34 1.65 16 44 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 45 H 0.06 1.00 6.01 -51.93 -0.31 0.68 16 46 H 0.39 9.49 5.28 -40.82 -0.22 9.27 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -31.25 379.98 -9.73 -40.99 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.51 Total: 10.76 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.78 Total: -3.88 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.23 Total: -60.08 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.25 -9.73 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996664905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.698 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds