Wall clock time and date at job start Tue Mar 31 2020 23:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 110.88408 * 2 1 4 4 C 1.55126 * 111.19501 * 236.06674 * 2 1 3 5 5 N 1.47425 * 104.71923 * 279.19185 * 4 2 1 6 6 C 1.34774 * 125.64984 * 155.82052 * 5 4 2 7 7 O 1.21613 * 119.99987 * 4.56683 * 6 5 4 8 8 C 1.47437 * 120.00457 * 184.57578 * 6 5 4 9 9 C 1.38957 * 121.17105 * 313.08613 * 8 6 5 10 10 N 1.32191 * 121.31895 * 179.97438 * 9 8 6 11 11 C 1.31202 * 123.69864 * 359.68140 * 10 9 8 12 12 C 1.40391 * 120.91245 * 0.61040 * 11 10 9 13 13 C 1.40394 * 122.14964 * 179.70452 * 12 11 10 14 14 C 1.36223 * 119.48704 * 179.72113 * 13 12 11 15 15 C 1.39296 * 121.10844 * 0.02562 * 14 13 12 16 16 C 1.36438 * 120.94456 * 359.97438 * 15 14 13 17 17 C 1.39688 * 119.43575 * 0.02562 * 16 15 14 18 18 C 1.47018 * 108.70448 * 335.54743 * 5 4 2 19 19 C 1.54331 * 107.26978 * 1.29252 * 18 5 4 20 20 H 1.08993 * 110.71591 * 263.82244 * 19 18 5 21 21 N 1.46502 * 110.71661 * 140.72981 * 19 18 5 22 22 C 1.36945 * 119.99763 * 86.45708 * 21 19 18 23 23 H 1.07994 * 119.99855 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99738 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00160 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99838 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47123 * 90.00198 * 26 24 22 28 28 H 1.48499 * 109.47016 * 210.00045 * 26 24 22 29 29 H 1.48499 * 109.47164 * 330.00005 * 26 24 22 30 30 H 1.08999 * 109.46981 * 296.11686 * 1 2 3 31 31 H 1.08997 * 109.47079 * 56.12126 * 1 2 3 32 32 H 1.08998 * 109.46645 * 176.12153 * 1 2 3 33 33 H 1.08999 * 109.47048 * 183.88634 * 3 2 1 34 34 H 1.09005 * 109.46480 * 303.87772 * 3 2 1 35 35 H 1.08998 * 109.47641 * 63.87742 * 3 2 1 36 36 H 1.08991 * 110.50148 * 160.34584 * 4 2 1 37 37 H 1.09006 * 110.33991 * 37.94975 * 4 2 1 38 38 H 1.08006 * 119.33487 * 359.97438 * 9 8 6 39 39 H 1.08000 * 119.54496 * 180.30900 * 11 10 9 40 40 H 1.08003 * 120.25271 * 359.74735 * 13 12 11 41 41 H 1.08003 * 119.44750 * 179.97438 * 14 13 12 42 42 H 1.08000 * 119.52805 * 179.97438 * 15 14 13 43 43 H 1.07995 * 120.28160 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.87988 * 120.70649 * 18 5 4 45 45 H 1.08992 * 109.88690 * 241.72022 * 18 5 4 46 46 H 0.96996 * 120.00317 * 266.44747 * 21 19 18 47 47 H 0.96995 * 120.00519 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0755 1.4295 0.0000 4 6 2.0909 -0.8074 -1.2000 5 7 2.0140 -2.2161 -0.7724 6 6 1.9473 -3.2835 -1.5925 7 8 2.0311 -3.1316 -2.7962 8 6 1.7726 -4.6353 -1.0306 9 6 2.5403 -5.0733 0.0416 10 7 2.3857 -6.2845 0.5480 11 6 1.5128 -7.1552 0.0993 12 6 0.6767 -6.8450 -0.9849 13 6 -0.2619 -7.7588 -1.4900 14 6 -1.0500 -7.3986 -2.5410 15 6 -0.9403 -6.1383 -3.1242 16 6 -0.0390 -5.2259 -2.6586 17 6 0.7849 -5.5626 -1.5820 18 6 2.0287 -2.2643 0.6970 19 6 2.0862 -0.8073 1.2026 20 1 3.1133 -0.5154 1.4212 21 7 1.2376 -0.6349 2.3843 22 6 1.7370 -0.9033 3.6309 23 1 2.7562 -1.2424 3.7428 24 6 0.9330 -0.7394 4.7506 25 7 -0.3090 -0.3256 4.6142 26 14 1.6139 -1.1062 6.4509 27 1 2.2240 0.1243 7.0158 28 1 0.5134 -1.5644 7.3365 29 1 2.6454 -2.1698 6.3522 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5728 -0.8532 32 1 -0.3632 -1.0253 -0.0695 33 1 3.1629 1.4035 -0.0697 34 1 1.6697 1.9731 -0.8533 35 1 1.7823 1.9303 0.9226 36 1 3.1253 -0.5271 -1.3986 37 1 1.4765 -0.6457 -2.0857 38 1 3.2780 -4.4108 0.4697 39 1 1.4399 -8.1258 0.5673 40 1 -0.3585 -8.7396 -1.0483 41 1 -1.7716 -8.1022 -2.9293 42 1 -1.5778 -5.8797 -3.9567 43 1 0.0367 -4.2517 -3.1185 44 1 1.1220 -2.7475 1.0611 45 1 2.9050 -2.8134 1.0412 46 1 0.3221 -0.3305 2.2837 47 1 -0.8706 -0.2108 5.3966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996664905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:04 Heat of formation + Delta-G solvation = 22.272269 kcal Electronic energy + Delta-G solvation = -29711.309222 eV Core-core repulsion = 25858.507249 eV Total energy + Delta-G solvation = -3852.801973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07234 -41.02417 -39.26713 -38.37282 -35.91027 -34.79394 -33.72858 -32.68319 -32.21794 -30.88773 -29.26852 -28.34100 -27.75053 -25.99216 -25.49564 -24.59636 -23.75501 -22.85201 -20.73758 -20.14421 -19.25542 -19.16437 -18.54616 -18.16696 -17.24531 -17.01541 -16.74289 -16.42174 -15.79601 -15.72611 -15.51268 -15.22815 -15.12581 -15.02806 -14.59213 -14.51004 -14.31574 -13.98033 -13.85519 -13.45672 -13.34883 -13.20497 -13.00134 -12.90298 -12.85594 -12.82143 -12.57959 -12.33163 -12.13383 -12.09512 -11.90722 -11.53716 -11.41546 -11.31098 -11.13934 -10.92401 -10.50800 -10.12962 -9.76923 -9.17771 -9.04763 -7.94458 -5.23495 -0.91984 -0.17151 0.63785 1.46816 1.49448 1.50020 1.58040 1.81225 2.06647 2.56651 2.97965 3.12976 3.33065 3.36848 3.46315 3.58067 3.66305 3.74966 3.77936 3.86019 3.88612 4.13122 4.21053 4.24374 4.26432 4.33486 4.39969 4.47610 4.53437 4.63241 4.69482 4.74668 4.79137 4.83251 4.97786 4.99092 5.02164 5.05232 5.08837 5.17874 5.22273 5.36289 5.39779 5.42846 5.47956 5.49501 5.54760 5.84427 6.26530 6.31668 6.79691 6.90580 7.35566 8.07234 8.31733 9.28591 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.003802 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.018947 B = 7362.837012 C = 8851.208721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.077 4.077 3 C -0.124 4.124 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.582 3.418 7 O -0.568 6.568 8 C -0.193 4.193 9 C 0.115 3.885 10 N -0.519 5.519 11 C 0.179 3.821 12 C -0.136 4.136 13 C -0.071 4.071 14 C -0.122 4.122 15 C -0.081 4.081 16 C -0.141 4.141 17 C -0.011 4.011 18 C 0.087 3.913 19 C 0.175 3.825 20 H 0.072 0.928 21 N -0.720 5.720 22 C -0.242 4.242 23 H 0.079 0.921 24 C -0.067 4.067 25 N -0.967 5.967 26 Si 0.966 3.034 27 H -0.287 1.287 28 H -0.299 1.299 29 H -0.270 1.270 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.209 0.791 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.153 0.847 43 H 0.116 0.884 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.380 0.620 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -12.159 -15.334 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.078 4.078 3 C -0.181 4.181 4 C -0.001 4.001 5 N -0.332 5.332 6 C 0.371 3.629 7 O -0.449 6.449 8 C -0.198 4.198 9 C -0.028 4.028 10 N -0.227 5.227 11 C 0.008 3.992 12 C -0.138 4.138 13 C -0.091 4.091 14 C -0.139 4.139 15 C -0.100 4.100 16 C -0.159 4.159 17 C -0.016 4.016 18 C -0.039 4.039 19 C 0.064 3.936 20 H 0.090 0.910 21 N -0.361 5.361 22 C -0.373 4.373 23 H 0.097 0.903 24 C -0.259 4.259 25 N -0.617 5.617 26 Si 0.795 3.205 27 H -0.214 1.214 28 H -0.226 1.226 29 H -0.195 1.195 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.176 0.824 39 H 0.225 0.775 40 H 0.195 0.805 41 H 0.186 0.814 42 H 0.171 0.829 43 H 0.134 0.866 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.216 0.784 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.098 -12.233 -15.147 19.500 hybrid contribution -0.572 0.555 0.571 0.980 sum 0.526 -11.678 -14.576 18.685 Atomic orbital electron populations 1.21568 0.94116 1.00770 1.01831 1.21976 0.95986 0.96404 0.93458 1.21613 1.01304 0.92953 1.02238 1.22487 1.01900 0.78497 0.97240 1.48407 1.70724 1.06566 1.07513 1.17694 0.76200 0.83738 0.85271 1.90730 1.52696 1.86391 1.15055 1.21835 1.02295 0.95096 1.00566 1.22888 0.96778 0.92919 0.90185 1.67182 1.21590 1.03280 1.30658 1.24020 0.86458 0.98955 0.89742 1.19300 1.00996 0.94261 0.99216 1.21491 0.92392 0.99606 0.95594 1.21416 0.99953 0.96492 0.96051 1.21474 0.95915 0.93397 0.99216 1.21034 0.97043 1.01224 0.96581 1.19105 0.94203 0.92911 0.95397 1.23142 1.00685 1.02126 0.77981 1.21401 0.95198 0.90428 0.86605 0.90978 1.42637 1.13283 1.79265 1.00950 1.19630 0.96845 1.36099 0.84770 0.90342 1.25446 0.96349 1.02896 1.01237 1.69797 1.07906 1.54527 1.29445 0.85256 0.76953 0.77853 0.80413 1.21423 1.22619 1.19501 0.93166 0.90672 0.94668 0.91208 0.90625 0.93293 0.89488 0.90249 0.82400 0.77498 0.80469 0.81449 0.82934 0.86582 0.93499 0.91313 0.78386 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.95 71.98 0.57 -3.51 16 2 C -0.08 -2.34 0.87 -50.71 -0.04 -2.39 16 3 C -0.12 -3.23 8.68 71.98 0.62 -2.60 16 4 C 0.12 3.47 5.83 86.93 0.51 3.98 16 5 N -0.60 -19.78 3.31 -815.21 -2.70 -22.48 16 6 C 0.58 20.45 7.02 86.67 0.61 21.06 16 7 O -0.57 -22.04 15.82 -4.07 -0.06 -22.10 16 8 C -0.19 -6.38 5.60 -18.59 -0.10 -6.48 16 9 C 0.12 3.64 9.73 84.81 0.83 4.47 16 10 N -0.52 -15.14 10.22 -193.71 -1.98 -17.12 16 11 C 0.18 3.98 11.00 85.31 0.94 4.92 16 12 C -0.14 -3.12 5.74 -21.33 -0.12 -3.24 16 13 C -0.07 -1.05 9.82 22.33 0.22 -0.83 16 14 C -0.12 -1.68 9.94 22.05 0.22 -1.46 16 15 C -0.08 -1.52 9.96 22.10 0.22 -1.30 16 16 C -0.14 -3.83 9.31 22.20 0.21 -3.62 16 17 C -0.01 -0.32 5.90 -19.94 -0.12 -0.44 16 18 C 0.09 3.07 5.08 86.73 0.44 3.51 16 19 C 0.17 6.44 2.84 46.18 0.13 6.57 16 20 H 0.07 2.61 8.02 -2.39 -0.02 2.59 16 21 N -0.72 -33.93 5.08 -317.32 -1.61 -35.54 16 22 C -0.24 -12.70 9.98 84.03 0.84 -11.86 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 24 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 25 N -0.97 -57.31 13.06 21.65 0.28 -57.02 16 26 Si 0.97 44.98 29.55 68.60 2.03 47.01 16 27 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 29 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 30 H 0.05 1.88 6.35 -2.39 -0.02 1.86 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 33 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 2.22 7.99 -2.39 -0.02 2.20 16 37 H 0.08 2.24 8.00 -2.38 -0.02 2.23 16 38 H 0.16 4.80 5.91 -2.91 -0.02 4.78 16 39 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.12 3.57 6.50 -2.91 -0.02 3.55 16 44 H 0.05 1.93 8.03 -2.39 -0.02 1.92 16 45 H 0.07 2.32 6.01 -2.39 -0.01 2.30 16 46 H 0.38 19.32 5.28 -92.71 -0.49 18.83 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -71.43 379.98 2.89 -68.54 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.50 Total: 35.16 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.43 Total: 3.56 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -6.01 Total: -132.17 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.06 Total: -22.10 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.43 2.89 -68.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996664905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.815 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds