Wall clock time and date at job start Tue Mar 31 2020 23:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 110.88344 * 2 1 4 4 C 1.55126 * 111.19125 * 236.06991 * 2 1 3 5 5 N 1.47426 * 104.72425 * 279.18387 * 4 2 1 6 6 C 1.34777 * 125.64649 * 155.81587 * 5 4 2 7 7 O 1.21603 * 120.00124 * 4.57952 * 6 5 4 8 8 C 1.47441 * 119.99773 * 184.30451 * 6 5 4 9 9 C 1.38960 * 121.16898 * 313.16449 * 8 6 5 10 10 N 1.32198 * 121.31651 * 180.02562 * 9 8 6 11 11 C 1.31202 * 123.69537 * 0.02562 * 10 9 8 12 12 C 1.40386 * 120.91612 * 359.97333 * 11 10 9 13 13 C 1.40397 * 122.14181 * 180.02562 * 12 11 10 14 14 C 1.36225 * 119.48606 * 180.02562 * 13 12 11 15 15 C 1.39299 * 121.10222 * 359.97438 * 14 13 12 16 16 C 1.36437 * 120.95242 * 0.02562 * 15 14 13 17 17 C 1.39695 * 119.43313 * 359.72400 * 16 15 14 18 18 C 1.47023 * 108.70046 * 335.55751 * 5 4 2 19 19 C 1.54321 * 107.27372 * 1.28263 * 18 5 4 20 20 H 1.08999 * 110.71841 * 140.55593 * 19 18 5 21 21 N 1.46493 * 110.71972 * 263.83355 * 19 18 5 22 22 C 1.36948 * 119.99783 * 273.54155 * 21 19 18 23 23 H 1.07998 * 119.99814 * 0.02562 * 22 21 19 24 24 C 1.38807 * 119.99919 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99795 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00110 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47731 * 89.99846 * 26 24 22 28 28 H 1.48504 * 109.47171 * 209.99815 * 26 24 22 29 29 H 1.48502 * 109.47082 * 329.99470 * 26 24 22 30 30 H 1.08998 * 109.46858 * 296.11430 * 1 2 3 31 31 H 1.08993 * 109.47684 * 56.12214 * 1 2 3 32 32 H 1.08999 * 109.46531 * 176.12278 * 1 2 3 33 33 H 1.08996 * 109.47027 * 183.88561 * 3 2 1 34 34 H 1.09004 * 109.46896 * 303.88553 * 3 2 1 35 35 H 1.09003 * 109.46939 * 63.87933 * 3 2 1 36 36 H 1.09007 * 110.49488 * 160.34492 * 4 2 1 37 37 H 1.08994 * 110.34793 * 37.95380 * 4 2 1 38 38 H 1.08000 * 119.34057 * 0.02562 * 9 8 6 39 39 H 1.07996 * 119.53844 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.25573 * 0.02562 * 13 12 11 41 41 H 1.07994 * 119.45175 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.52100 * 180.02562 * 15 14 13 43 43 H 1.07997 * 120.28426 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.88196 * 120.70271 * 18 5 4 45 45 H 1.09000 * 109.87770 * 241.86608 * 18 5 4 46 46 H 0.97002 * 120.00403 * 93.55003 * 21 19 18 47 47 H 0.97003 * 119.99975 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4296 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0140 -2.2161 -0.7725 6 6 1.9473 -3.2834 -1.5929 7 8 2.0310 -3.1314 -2.7965 8 6 1.7788 -4.6359 -1.0306 9 6 2.5510 -5.0713 0.0395 10 7 2.4026 -6.2835 0.5456 11 6 1.5368 -7.1598 0.0942 12 6 0.6928 -6.8504 -0.9841 13 6 -0.2431 -7.7679 -1.4874 14 6 -1.0350 -7.4107 -2.5367 15 6 -0.9323 -6.1494 -3.1189 16 6 -0.0339 -5.2334 -2.6550 17 6 0.7901 -5.5651 -1.5768 18 6 2.0287 -2.2643 0.6968 19 6 2.0863 -0.8074 1.2025 20 1 1.4525 -0.6785 2.0799 21 7 3.4667 -0.4149 1.4962 22 6 4.0067 -0.6793 2.7267 23 1 3.4149 -1.1776 3.4803 24 6 5.3149 -0.3079 3.0048 25 7 5.8340 -0.5625 4.1872 26 14 6.3387 0.5532 1.7011 27 1 6.1588 2.0223 1.8208 28 1 7.7715 0.2129 1.8921 29 1 5.8998 0.1089 0.3538 30 1 -0.3633 0.4523 0.9228 31 1 -0.3634 0.5728 -0.8531 32 1 -0.3632 -1.0253 -0.0695 33 1 3.1629 1.4035 -0.0696 34 1 1.6696 1.9733 -0.8532 35 1 1.7822 1.9303 0.9227 36 1 3.1253 -0.5270 -1.3986 37 1 1.4765 -0.6457 -2.0858 38 1 3.2869 -4.4060 0.4663 39 1 1.4725 -8.1327 0.5586 40 1 -0.3345 -8.7494 -1.0461 41 1 -1.7544 -8.1171 -2.9236 42 1 -1.5732 -5.8929 -3.9495 43 1 0.0363 -4.2584 -3.1142 44 1 1.1221 -2.7476 1.0610 45 1 2.9066 -2.8111 1.0410 46 1 3.9983 0.0324 0.8193 47 1 6.7481 -0.3026 4.3818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996664907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:09 Heat of formation + Delta-G solvation = 44.481277 kcal Electronic energy + Delta-G solvation = -29813.518430 eV Core-core repulsion = 25961.679511 eV Total energy + Delta-G solvation = -3851.838918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04496 -39.90551 -37.99883 -37.48675 -34.14822 -33.50728 -32.75441 -31.34830 -31.14364 -29.97748 -28.37399 -26.99690 -26.63257 -24.71596 -23.84608 -23.50813 -22.72092 -21.46281 -19.53880 -19.12059 -18.29705 -17.67076 -17.56290 -16.98195 -16.10335 -15.77835 -15.60472 -14.85131 -14.68387 -14.52964 -14.27783 -14.22901 -14.03095 -13.81615 -13.51468 -13.21599 -12.87028 -12.75549 -12.53154 -12.36257 -12.30077 -12.15796 -12.07708 -11.75208 -11.71993 -11.48305 -11.32954 -11.03671 -10.72602 -10.60107 -10.33207 -10.29109 -10.10995 -9.97318 -9.64761 -9.42382 -9.28359 -9.06655 -8.46831 -8.24054 -7.41611 -5.86488 -3.24163 0.00000 0.71459 1.52454 2.68987 2.90579 3.10494 3.31041 3.33425 3.40367 3.88392 4.19472 4.33860 4.42451 4.50340 4.51020 4.60473 4.65160 4.83989 4.89090 4.95844 4.98985 5.04749 5.20792 5.36623 5.43580 5.44695 5.49104 5.54674 5.59205 5.71399 5.75278 5.77835 5.85325 5.90712 5.97036 6.04253 6.08543 6.13410 6.16063 6.19536 6.23454 6.36706 6.38558 6.47093 6.58450 6.60168 6.62305 7.63532 7.81285 7.87747 8.18633 8.32054 9.08730 9.81077 9.99126 11.31093 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003592 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.869710 B = 7794.168076 C = 8910.973250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 C -0.127 4.127 4 C 0.120 3.880 5 N -0.598 5.598 6 C 0.580 3.420 7 O -0.543 6.543 8 C -0.162 4.162 9 C 0.121 3.879 10 N -0.487 5.487 11 C 0.165 3.835 12 C -0.119 4.119 13 C -0.085 4.085 14 C -0.123 4.123 15 C -0.097 4.097 16 C -0.103 4.103 17 C 0.010 3.990 18 C 0.066 3.934 19 C 0.186 3.814 20 H 0.081 0.919 21 N -0.736 5.736 22 C -0.252 4.252 23 H 0.093 0.907 24 C 0.013 3.987 25 N -0.927 5.927 26 Si 0.878 3.122 27 H -0.282 1.282 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.168 0.832 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.138 0.862 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.364 0.636 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.846 -9.789 -12.279 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.093 4.093 3 C -0.185 4.185 4 C -0.002 4.002 5 N -0.330 5.330 6 C 0.368 3.632 7 O -0.422 6.422 8 C -0.167 4.167 9 C -0.022 4.022 10 N -0.193 5.193 11 C -0.007 4.007 12 C -0.121 4.121 13 C -0.105 4.105 14 C -0.141 4.141 15 C -0.116 4.116 16 C -0.121 4.121 17 C 0.005 3.995 18 C -0.059 4.059 19 C 0.074 3.926 20 H 0.098 0.902 21 N -0.379 5.379 22 C -0.381 4.381 23 H 0.111 0.889 24 C -0.184 4.184 25 N -0.574 5.574 26 Si 0.708 3.292 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.185 0.815 39 H 0.183 0.817 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.198 0.802 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.113 -9.891 -11.985 21.676 hybrid contribution 0.495 0.713 -1.498 1.732 sum -14.618 -9.177 -13.483 21.902 Atomic orbital electron populations 1.21667 0.93443 1.01683 1.01878 1.22101 0.95813 0.95904 0.95510 1.21602 1.01212 0.93902 1.01766 1.22361 1.01025 0.79608 0.97234 1.48360 1.70791 1.05882 1.07979 1.17458 0.77039 0.83104 0.85619 1.90769 1.51390 1.85840 1.14208 1.21856 1.00351 0.95215 0.99304 1.23086 0.96562 0.92316 0.90248 1.67191 1.19564 1.02879 1.29693 1.23305 0.88430 0.98277 0.90667 1.18982 0.99792 0.94363 0.99001 1.20976 0.94443 0.98725 0.96310 1.20933 0.99755 0.96740 0.96652 1.21064 0.97654 0.93444 0.99449 1.21087 0.94774 1.00968 0.95293 1.18831 0.94081 0.91922 0.94670 1.23438 1.01487 1.02808 0.78168 1.21174 0.87741 0.88935 0.94710 0.90157 1.42818 1.09489 1.71133 1.14444 1.19036 0.96379 1.33370 0.89349 0.88909 1.24641 0.96889 1.00598 0.96270 1.69689 1.15302 1.51786 1.20614 0.86667 0.80563 0.80087 0.81886 1.20853 1.21601 1.20361 0.91973 0.92649 0.92743 0.92231 0.93096 0.91484 0.91334 0.90789 0.81518 0.81725 0.84698 0.85493 0.85440 0.84385 0.92186 0.89855 0.80161 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.59 37.16 0.32 -1.21 16 2 C -0.09 -1.30 0.83 -152.24 -0.13 -1.43 16 3 C -0.13 -1.77 8.22 37.16 0.31 -1.47 16 4 C 0.12 1.83 5.81 -2.41 -0.01 1.82 16 5 N -0.60 -9.67 3.31 -171.64 -0.57 -10.24 16 6 C 0.58 9.83 7.02 -12.51 -0.09 9.75 16 7 O -0.54 -10.36 15.83 5.28 0.08 -10.28 16 8 C -0.16 -2.52 5.59 -102.66 -0.57 -3.09 16 9 C 0.12 1.88 9.73 -17.13 -0.17 1.71 16 10 N -0.49 -7.07 10.22 -12.58 -0.13 -7.20 16 11 C 0.17 1.89 11.00 -17.01 -0.19 1.70 16 12 C -0.12 -1.38 5.74 -106.89 -0.61 -1.99 16 13 C -0.08 -0.72 9.82 -39.49 -0.39 -1.11 16 14 C -0.12 -0.99 9.94 -39.91 -0.40 -1.39 16 15 C -0.10 -0.92 9.96 -39.84 -0.40 -1.32 16 16 C -0.10 -1.29 9.31 -39.69 -0.37 -1.66 16 17 C 0.01 0.14 5.90 -104.75 -0.62 -0.47 16 18 C 0.07 1.08 5.07 -3.06 -0.02 1.07 16 19 C 0.19 3.20 2.86 -66.10 -0.19 3.01 16 20 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 21 N -0.74 -15.78 4.41 -51.66 -0.23 -16.01 16 22 C -0.25 -6.57 10.46 -15.06 -0.16 -6.72 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 24 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 25 N -0.93 -28.02 13.97 55.49 0.78 -27.24 16 26 Si 0.88 21.33 27.74 -169.99 -4.71 16.62 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 33 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.13 7.99 -51.93 -0.41 0.71 16 37 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 38 H 0.17 2.67 5.91 -52.49 -0.31 2.36 16 39 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.87 6.51 -52.49 -0.34 1.53 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.52 5.91 -51.93 -0.31 1.21 16 46 H 0.36 7.85 3.96 -40.82 -0.16 7.69 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -32.31 377.47 -9.37 -41.68 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.51 Total: 9.53 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.77 Total: -2.55 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: -0.15 Total: -60.69 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.31 -9.37 -41.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996664907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.166 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds