Wall clock time and date at job start Tue Mar 31 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 110.88344 * 2 1 4 4 C 1.55126 * 111.19125 * 236.06991 * 2 1 3 5 5 N 1.47426 * 104.72425 * 279.18387 * 4 2 1 6 6 C 1.34777 * 125.64649 * 155.81587 * 5 4 2 7 7 O 1.21603 * 120.00124 * 4.57952 * 6 5 4 8 8 C 1.47441 * 119.99773 * 184.30451 * 6 5 4 9 9 C 1.38960 * 121.16898 * 313.16449 * 8 6 5 10 10 N 1.32198 * 121.31651 * 180.02562 * 9 8 6 11 11 C 1.31202 * 123.69537 * 0.02562 * 10 9 8 12 12 C 1.40386 * 120.91612 * 359.97333 * 11 10 9 13 13 C 1.40397 * 122.14181 * 180.02562 * 12 11 10 14 14 C 1.36225 * 119.48606 * 180.02562 * 13 12 11 15 15 C 1.39299 * 121.10222 * 359.97438 * 14 13 12 16 16 C 1.36437 * 120.95242 * 0.02562 * 15 14 13 17 17 C 1.39695 * 119.43313 * 359.72400 * 16 15 14 18 18 C 1.47023 * 108.70046 * 335.55751 * 5 4 2 19 19 C 1.54321 * 107.27372 * 1.28263 * 18 5 4 20 20 H 1.08999 * 110.71841 * 140.55593 * 19 18 5 21 21 N 1.46493 * 110.71972 * 263.83355 * 19 18 5 22 22 C 1.36948 * 119.99783 * 273.54155 * 21 19 18 23 23 H 1.07998 * 119.99814 * 0.02562 * 22 21 19 24 24 C 1.38807 * 119.99919 * 179.97438 * 22 21 19 25 25 N 1.31620 * 119.99795 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00110 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47731 * 89.99846 * 26 24 22 28 28 H 1.48504 * 109.47171 * 209.99815 * 26 24 22 29 29 H 1.48502 * 109.47082 * 329.99470 * 26 24 22 30 30 H 1.08998 * 109.46858 * 296.11430 * 1 2 3 31 31 H 1.08993 * 109.47684 * 56.12214 * 1 2 3 32 32 H 1.08999 * 109.46531 * 176.12278 * 1 2 3 33 33 H 1.08996 * 109.47027 * 183.88561 * 3 2 1 34 34 H 1.09004 * 109.46896 * 303.88553 * 3 2 1 35 35 H 1.09003 * 109.46939 * 63.87933 * 3 2 1 36 36 H 1.09007 * 110.49488 * 160.34492 * 4 2 1 37 37 H 1.08994 * 110.34793 * 37.95380 * 4 2 1 38 38 H 1.08000 * 119.34057 * 0.02562 * 9 8 6 39 39 H 1.07996 * 119.53844 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.25573 * 0.02562 * 13 12 11 41 41 H 1.07994 * 119.45175 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.52100 * 180.02562 * 15 14 13 43 43 H 1.07997 * 120.28426 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.88196 * 120.70271 * 18 5 4 45 45 H 1.09000 * 109.87770 * 241.86608 * 18 5 4 46 46 H 0.97002 * 120.00403 * 93.55003 * 21 19 18 47 47 H 0.97003 * 119.99975 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4296 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0140 -2.2161 -0.7725 6 6 1.9473 -3.2834 -1.5929 7 8 2.0310 -3.1314 -2.7965 8 6 1.7788 -4.6359 -1.0306 9 6 2.5510 -5.0713 0.0395 10 7 2.4026 -6.2835 0.5456 11 6 1.5368 -7.1598 0.0942 12 6 0.6928 -6.8504 -0.9841 13 6 -0.2431 -7.7679 -1.4874 14 6 -1.0350 -7.4107 -2.5367 15 6 -0.9323 -6.1494 -3.1189 16 6 -0.0339 -5.2334 -2.6550 17 6 0.7901 -5.5651 -1.5768 18 6 2.0287 -2.2643 0.6968 19 6 2.0863 -0.8074 1.2025 20 1 1.4525 -0.6785 2.0799 21 7 3.4667 -0.4149 1.4962 22 6 4.0067 -0.6793 2.7267 23 1 3.4149 -1.1776 3.4803 24 6 5.3149 -0.3079 3.0048 25 7 5.8340 -0.5625 4.1872 26 14 6.3387 0.5532 1.7011 27 1 6.1588 2.0223 1.8208 28 1 7.7715 0.2129 1.8921 29 1 5.8998 0.1089 0.3538 30 1 -0.3633 0.4523 0.9228 31 1 -0.3634 0.5728 -0.8531 32 1 -0.3632 -1.0253 -0.0695 33 1 3.1629 1.4035 -0.0696 34 1 1.6696 1.9733 -0.8532 35 1 1.7822 1.9303 0.9227 36 1 3.1253 -0.5270 -1.3986 37 1 1.4765 -0.6457 -2.0858 38 1 3.2869 -4.4060 0.4663 39 1 1.4725 -8.1327 0.5586 40 1 -0.3345 -8.7494 -1.0461 41 1 -1.7544 -8.1171 -2.9236 42 1 -1.5732 -5.8929 -3.9495 43 1 0.0363 -4.2584 -3.1142 44 1 1.1221 -2.7476 1.0610 45 1 2.9066 -2.8111 1.0410 46 1 3.9983 0.0324 0.8193 47 1 6.7481 -0.3026 4.3818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996664907.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:08 Heat of formation + Delta-G solvation = 24.530450 kcal Electronic energy + Delta-G solvation = -29814.383562 eV Core-core repulsion = 25961.679511 eV Total energy + Delta-G solvation = -3852.704051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.09952 -41.08585 -39.33029 -38.37628 -35.89282 -34.85046 -33.73588 -33.06177 -32.21230 -30.88474 -29.85756 -28.16437 -27.80045 -25.93116 -25.23339 -24.58351 -23.68774 -22.92921 -20.78852 -20.53564 -19.43540 -19.24987 -18.53838 -18.14663 -17.20041 -17.16373 -16.67532 -16.38263 -16.10388 -15.73419 -15.41769 -15.24288 -15.10593 -14.99263 -14.72439 -14.54662 -14.37351 -13.97631 -13.70894 -13.67642 -13.54362 -13.22691 -13.10135 -12.92298 -12.89895 -12.84136 -12.77971 -12.30485 -12.28035 -11.97800 -11.91096 -11.64382 -11.42717 -11.31668 -11.15866 -11.00152 -10.50158 -10.12382 -9.80829 -9.36591 -9.17516 -8.02956 -5.36461 -0.92088 -0.17268 0.63992 1.34839 1.36567 1.42823 1.48433 1.79930 2.04952 2.45476 2.97641 3.10415 3.25692 3.33418 3.43496 3.47409 3.56932 3.66779 3.70777 3.86070 3.88023 3.92532 4.19409 4.24538 4.27816 4.36247 4.43118 4.48876 4.50295 4.58773 4.68527 4.69884 4.80585 4.84950 4.91353 4.99621 5.01244 5.03196 5.04278 5.13680 5.22740 5.33616 5.37872 5.44135 5.47114 5.48912 5.77943 5.85626 6.20919 6.30678 6.80149 6.89290 7.05964 7.80706 7.98692 9.18094 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.003592 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.869710 B = 7794.168076 C = 8910.973250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.117 3.883 5 N -0.598 5.598 6 C 0.580 3.420 7 O -0.571 6.571 8 C -0.188 4.188 9 C 0.114 3.886 10 N -0.521 5.521 11 C 0.182 3.818 12 C -0.134 4.134 13 C -0.070 4.070 14 C -0.120 4.120 15 C -0.079 4.079 16 C -0.139 4.139 17 C -0.008 4.008 18 C 0.080 3.920 19 C 0.177 3.823 20 H 0.082 0.918 21 N -0.738 5.738 22 C -0.224 4.224 23 H 0.066 0.934 24 C -0.054 4.054 25 N -0.978 5.978 26 Si 0.939 3.061 27 H -0.273 1.273 28 H -0.300 1.300 29 H -0.262 1.262 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.146 0.854 39 H 0.209 0.791 40 H 0.178 0.822 41 H 0.168 0.832 42 H 0.154 0.846 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.365 0.635 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.953 -11.567 -14.365 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.079 4.079 3 C -0.184 4.184 4 C -0.005 4.005 5 N -0.329 5.329 6 C 0.369 3.631 7 O -0.452 6.452 8 C -0.193 4.193 9 C -0.029 4.029 10 N -0.229 5.229 11 C 0.010 3.990 12 C -0.136 4.136 13 C -0.089 4.089 14 C -0.138 4.138 15 C -0.098 4.098 16 C -0.157 4.157 17 C -0.013 4.013 18 C -0.045 4.045 19 C 0.067 3.933 20 H 0.100 0.900 21 N -0.380 5.380 22 C -0.355 4.355 23 H 0.084 0.916 24 C -0.246 4.246 25 N -0.629 5.629 26 Si 0.768 3.232 27 H -0.199 1.199 28 H -0.228 1.228 29 H -0.188 1.188 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.163 0.837 39 H 0.226 0.774 40 H 0.195 0.805 41 H 0.186 0.814 42 H 0.171 0.829 43 H 0.135 0.865 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.200 0.800 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.274 -11.657 -14.108 25.863 hybrid contribution 1.246 1.059 -0.910 1.871 sum -17.028 -10.598 -15.018 25.056 Atomic orbital electron populations 1.21639 0.91018 1.01996 1.03392 1.22064 0.97501 0.95497 0.92799 1.21609 1.00057 0.93713 1.03032 1.22448 1.00553 0.79302 0.98236 1.48392 1.70561 1.06305 1.07670 1.17753 0.76197 0.83823 0.85281 1.90729 1.52803 1.86383 1.15275 1.21762 1.02262 0.94992 1.00309 1.22787 0.96547 0.92971 0.90586 1.67202 1.21725 1.03046 1.30945 1.24054 0.86329 0.98841 0.89747 1.19288 1.00917 0.94131 0.99238 1.21485 0.92331 0.99503 0.95614 1.21421 0.99921 0.96491 0.95927 1.21473 0.95903 0.93314 0.99113 1.21020 0.96967 1.01346 0.96335 1.19062 0.94071 0.92739 0.95430 1.23143 1.01111 1.01737 0.78497 1.21409 0.85641 0.89962 0.96319 0.90009 1.42782 1.11218 1.71220 1.12829 1.19006 0.95778 1.30531 0.90176 0.91557 1.25315 0.98397 1.02645 0.98214 1.69851 1.15534 1.54515 1.22964 0.85659 0.78152 0.79356 0.80076 1.19870 1.22755 1.18761 0.90961 0.90533 0.93157 0.94149 0.90173 0.91613 0.92785 0.89605 0.83673 0.77411 0.80461 0.81431 0.82873 0.86529 0.90812 0.92248 0.79998 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.59 71.98 0.62 -2.03 16 2 C -0.08 -2.12 0.83 -50.71 -0.04 -2.16 16 3 C -0.13 -3.32 8.22 71.98 0.59 -2.73 16 4 C 0.12 3.56 5.81 86.93 0.50 4.06 16 5 N -0.60 -19.97 3.31 -815.20 -2.70 -22.67 16 6 C 0.58 20.64 7.02 86.67 0.61 21.25 16 7 O -0.57 -22.74 15.83 -4.04 -0.06 -22.81 16 8 C -0.19 -6.12 5.59 -18.59 -0.10 -6.22 16 9 C 0.11 3.75 9.73 84.81 0.83 4.58 16 10 N -0.52 -15.35 10.22 -193.71 -1.98 -17.33 16 11 C 0.18 3.79 11.00 85.31 0.94 4.73 16 12 C -0.13 -2.78 5.74 -21.33 -0.12 -2.91 16 13 C -0.07 -0.85 9.82 22.33 0.22 -0.63 16 14 C -0.12 -1.34 9.94 22.06 0.22 -1.12 16 15 C -0.08 -1.26 9.96 22.10 0.22 -1.04 16 16 C -0.14 -3.40 9.31 22.20 0.21 -3.20 16 17 C -0.01 -0.21 5.90 -19.94 -0.12 -0.33 16 18 C 0.08 2.73 5.07 86.73 0.44 3.17 16 19 C 0.18 6.13 2.86 46.18 0.13 6.26 16 20 H 0.08 2.84 8.03 -2.39 -0.02 2.82 16 21 N -0.74 -32.19 4.41 -317.34 -1.40 -33.59 16 22 C -0.22 -12.08 10.46 84.03 0.88 -11.20 16 23 H 0.07 3.88 8.06 -2.91 -0.02 3.86 16 24 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 25 N -0.98 -61.54 13.97 21.65 0.30 -61.24 16 26 Si 0.94 45.23 27.74 68.60 1.90 47.13 16 27 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 28 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 29 H -0.26 -11.78 6.52 99.48 0.65 -11.14 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.14 7.91 -2.39 -0.02 1.12 16 33 H 0.04 1.22 6.38 -2.39 -0.02 1.20 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.80 7.99 -2.38 -0.02 1.78 16 37 H 0.09 2.42 8.00 -2.39 -0.02 2.40 16 38 H 0.15 5.19 5.91 -2.91 -0.02 5.17 16 39 H 0.21 2.28 8.06 -2.91 -0.02 2.25 16 40 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 41 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.12 3.29 6.51 -2.91 -0.02 3.27 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.06 2.32 5.91 -2.39 -0.01 2.31 16 46 H 0.37 15.83 3.96 -92.71 -0.37 15.46 16 47 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.46 377.47 3.11 -72.35 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.57 Total: 30.30 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.48 Total: 7.85 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -5.78 Total: -134.83 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Total: -75.46 3.11 -72.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996664907.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.879 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds