Wall clock time and date at job start Tue Mar 31 2020 22:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39308 * 119.11873 * 2 1 4 4 C 1.36584 * 119.90622 * 180.02562 * 3 2 1 5 5 C 1.40888 * 118.15992 * 0.02562 * 4 3 2 6 6 C 1.40181 * 121.22645 * 180.23387 * 5 4 3 7 7 C 1.38546 * 119.40310 * 180.24565 * 6 5 4 8 8 C 1.47755 * 119.80821 * 179.77391 * 7 6 5 9 9 O 1.21574 * 119.99784 * 323.60184 * 8 7 6 10 10 N 1.34781 * 120.00587 * 143.60277 * 8 7 6 11 11 C 1.46920 * 120.63505 * 174.31608 * 10 8 7 12 12 C 1.53191 * 108.89567 * 126.46519 * 11 10 8 13 13 C 1.53035 * 109.31147 * 54.56219 * 12 11 10 14 14 N 1.46504 * 109.46129 * 178.63169 * 13 12 11 15 15 C 1.36932 * 120.00049 * 205.00196 * 14 13 12 16 16 H 1.08000 * 120.00090 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00128 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00261 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47139 * 59.99973 * 19 17 15 21 21 H 1.48503 * 109.47393 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47103 * 300.00189 * 19 17 15 23 23 C 1.53044 * 109.53824 * 298.63445 * 13 12 11 24 24 C 1.46964 * 120.64661 * 354.13274 * 10 8 7 25 25 C 1.40631 * 120.39023 * 359.49652 * 7 6 5 26 26 C 1.35710 * 120.92040 * 0.27421 * 25 7 6 27 27 C 1.40757 * 120.10740 * 359.97438 * 26 25 7 28 28 N 1.31127 * 119.11414 * 180.02562 * 2 1 3 29 29 H 1.09010 * 109.47121 * 89.99697 * 1 2 3 30 30 H 1.08996 * 109.47275 * 210.00003 * 1 2 3 31 31 H 1.09001 * 109.47238 * 330.00247 * 1 2 3 32 32 H 1.08005 * 120.04361 * 0.04493 * 3 2 1 33 33 H 1.08002 * 120.91411 * 180.02562 * 4 3 2 34 34 H 1.08006 * 120.30004 * 0.02562 * 6 5 4 35 35 H 1.09003 * 109.58815 * 6.60772 * 11 10 8 36 36 H 1.08994 * 109.58814 * 246.32859 * 11 10 8 37 37 H 1.08994 * 109.49835 * 174.51668 * 12 11 10 38 38 H 1.09006 * 109.49580 * 294.60972 * 12 11 10 39 39 H 1.08992 * 109.46111 * 58.65669 * 13 12 11 40 40 H 0.96999 * 119.99505 * 24.99441 * 14 13 12 41 41 H 0.96995 * 120.00482 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.49531 * 181.31528 * 23 13 12 43 43 H 1.08991 * 109.49810 * 301.41119 * 23 13 12 44 44 H 1.09003 * 109.46069 * 113.75158 * 24 10 8 45 45 H 1.08996 * 109.71492 * 353.46362 * 24 10 8 46 46 H 1.07995 * 119.54339 * 180.25836 * 25 7 6 47 47 H 1.08000 * 119.94305 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2170 0.0000 4 6 3.5506 1.2358 -0.0005 5 6 4.2325 0.0029 -0.0016 6 6 5.6332 -0.0528 0.0027 7 6 6.2649 -1.2859 -0.0037 8 6 7.7408 -1.3551 -0.0043 9 8 8.3875 -0.5338 -0.6250 10 7 8.3702 -2.3286 0.6831 11 6 9.8281 -2.4864 0.5927 12 6 10.4161 -2.4834 2.0073 13 6 9.7189 -3.5558 2.8474 14 7 10.3013 -3.5780 4.1916 15 6 10.2406 -4.7195 4.9453 16 1 9.7630 -5.6035 4.5491 17 6 10.7929 -4.7407 6.2187 18 7 11.3745 -3.6633 6.7018 19 14 10.7107 -6.2982 7.2467 20 1 11.4087 -7.3987 6.5346 21 1 11.3672 -6.0614 8.5575 22 1 9.2904 -6.6726 7.4654 23 6 8.2249 -3.2387 2.9447 24 6 7.6120 -3.2503 1.5408 25 6 5.5096 -2.4722 -0.0038 26 6 4.1530 -2.4351 -0.0032 27 6 3.4804 -1.1986 -0.0019 28 7 2.1450 -1.1456 -0.0005 29 1 -0.3634 0.0001 -1.0278 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6312 2.1444 0.0007 33 1 4.0927 2.1699 -0.0001 34 1 6.2148 0.8573 0.0073 35 1 10.2502 -1.6606 0.0199 36 1 10.0638 -3.4301 0.1010 37 1 11.4838 -2.6969 1.9579 38 1 10.2609 -1.5057 2.4637 39 1 9.8536 -4.5298 2.3773 40 1 10.7300 -2.7839 4.5475 41 1 11.7601 -3.6779 7.5917 42 1 7.7330 -3.9901 3.5626 43 1 8.0903 -2.2541 3.3923 44 1 7.6648 -4.2575 1.1273 45 1 6.5712 -2.9311 1.5938 46 1 6.0161 -3.4260 -0.0046 47 1 3.5886 -3.3559 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997109953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:40 Heat of formation + Delta-G solvation = 36.144678 kcal Electronic energy + Delta-G solvation = -28482.153375 eV Core-core repulsion = 24629.952954 eV Total energy + Delta-G solvation = -3852.200421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31212 -40.12445 -37.64876 -37.08231 -34.58924 -33.84528 -32.70685 -31.87952 -30.81145 -30.42038 -29.35323 -28.24060 -25.23333 -24.28581 -23.67810 -23.00501 -22.39886 -22.22998 -20.55774 -19.33352 -18.64027 -17.56437 -17.07314 -16.75799 -16.18136 -15.71662 -15.24394 -14.96091 -14.89420 -14.68503 -14.36344 -14.18217 -13.80631 -13.65048 -13.48629 -13.42100 -13.36068 -13.24953 -13.03200 -12.61093 -12.44074 -12.35393 -11.95835 -11.79942 -11.62805 -11.33801 -10.98979 -10.90692 -10.87255 -10.80483 -10.49754 -10.28436 -9.92511 -9.85051 -9.80289 -9.68726 -9.00677 -8.88127 -8.64215 -8.45983 -7.00419 -5.79742 -3.09202 -0.02876 0.38352 1.63081 2.21335 2.86795 3.11063 3.41300 3.45898 3.47009 3.77386 3.80758 4.21555 4.30887 4.32773 4.46705 4.55430 4.70831 4.76453 4.86882 5.02974 5.08857 5.14733 5.19047 5.27092 5.30937 5.34750 5.45460 5.50104 5.54899 5.56672 5.61075 5.67224 5.70469 5.72348 5.89116 5.94888 5.96482 6.01846 6.18810 6.19587 6.34477 6.36025 6.45708 6.48032 6.59199 6.85786 7.01030 7.41936 7.59905 7.65361 8.11463 8.38386 9.49514 10.06868 10.41518 11.42694 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002413 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.280068 B =11599.076747 C =12681.319810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.164 3.836 3 C -0.178 4.178 4 C -0.044 4.044 5 C -0.117 4.117 6 C -0.031 4.031 7 C -0.125 4.125 8 C 0.559 3.441 9 O -0.543 6.543 10 N -0.598 5.598 11 C 0.116 3.884 12 C -0.139 4.139 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.151 4.151 24 C 0.094 3.906 25 C -0.075 4.075 26 C -0.101 4.101 27 C 0.149 3.851 28 N -0.479 5.479 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.143 0.857 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.168 8.171 -16.634 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.012 3.988 3 C -0.198 4.198 4 C -0.069 4.069 5 C -0.119 4.119 6 C -0.051 4.051 7 C -0.128 4.128 8 C 0.347 3.653 9 O -0.422 6.422 10 N -0.330 5.330 11 C -0.006 4.006 12 C -0.178 4.178 13 C 0.068 3.932 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.192 4.192 24 C -0.029 4.029 25 C -0.095 4.095 26 C -0.120 4.120 27 C 0.027 3.973 28 N -0.189 5.189 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.217 0.783 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.160 0.840 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.174 7.553 -16.850 26.620 hybrid contribution 0.581 0.179 0.948 1.126 sum -18.593 7.732 -15.902 25.658 Atomic orbital electron populations 1.20808 0.88505 1.03845 1.03370 1.21567 0.97255 0.88226 0.91799 1.21718 0.94976 0.99341 1.03758 1.21558 0.94522 0.97304 0.93552 1.18761 0.94277 0.94361 1.04504 1.21342 0.92363 0.97646 0.93743 1.19907 0.93502 0.94179 1.05253 1.18235 0.86967 0.80776 0.79315 1.90768 1.67180 1.39596 1.44629 1.48065 1.08382 1.31582 1.44928 1.21661 0.78488 1.02368 0.98126 1.22205 1.00617 1.00733 0.94242 1.20173 0.90034 0.95762 0.87198 1.42427 1.67920 1.13785 1.12278 1.19180 1.31054 0.90942 0.96023 0.91209 1.24757 1.01104 0.97364 0.97695 1.69651 1.43044 1.27497 1.17848 0.86279 0.77527 0.82733 0.79695 1.21247 1.21711 1.21269 1.22691 1.00123 1.02624 0.93773 1.22339 0.96030 0.92763 0.91734 1.21194 0.93754 0.98141 0.96420 1.20676 0.93630 0.96643 1.01035 1.18948 0.89086 0.92894 0.96390 1.67905 1.08317 1.28748 1.13894 0.90022 0.90138 0.90392 0.84341 0.83976 0.84154 0.89226 0.91298 0.90426 0.91788 0.93356 0.78253 0.93426 0.90501 0.92181 0.91168 0.89373 0.83959 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.14 36.00 0.37 -0.24 16 2 C 0.16 1.47 6.78 -82.50 -0.56 0.91 16 3 C -0.18 -1.35 9.64 -39.78 -0.38 -1.73 16 4 C -0.04 -0.37 9.89 -39.18 -0.39 -0.76 16 5 C -0.12 -1.29 5.74 -106.82 -0.61 -1.90 16 6 C -0.03 -0.36 9.36 -38.74 -0.36 -0.73 16 7 C -0.13 -1.56 5.26 -104.99 -0.55 -2.12 16 8 C 0.56 8.21 7.35 -12.37 -0.09 8.12 16 9 O -0.54 -9.50 16.24 5.30 0.09 -9.41 16 10 N -0.60 -8.31 2.98 -173.89 -0.52 -8.83 16 11 C 0.12 1.63 6.44 -3.71 -0.02 1.60 16 12 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 13 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 14 N -0.72 -17.61 5.12 -53.39 -0.27 -17.88 16 15 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 16 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 17 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 19 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 24 C 0.09 1.20 4.76 -3.69 -0.02 1.19 16 25 C -0.08 -0.80 7.24 -39.58 -0.29 -1.08 16 26 C -0.10 -1.07 9.95 -39.54 -0.39 -1.46 16 27 C 0.15 1.75 6.61 -84.78 -0.56 1.19 16 28 N -0.48 -5.48 10.23 -7.17 -0.07 -5.55 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.14 0.62 8.06 -52.48 -0.42 0.19 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.14 1.52 8.00 -52.48 -0.42 1.10 16 35 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.08 1.35 8.14 -51.92 -0.42 0.93 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.78 8.04 -51.93 -0.42 0.37 16 45 H 0.09 1.02 4.51 -51.93 -0.23 0.78 16 46 H 0.14 1.28 6.08 -52.49 -0.32 0.96 16 47 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 381.92 15.07 5.76 5.76 Total: -1.00 -33.35 381.92 -10.60 -43.95 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.69 Total: 8.14 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -4.59 Total: -6.03 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.14 Total: -59.42 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.35 -10.60 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997109953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.094 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds