Wall clock time and date at job start Tue Mar 31 2020 22:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39308 * 119.11873 * 2 1 4 4 C 1.36584 * 119.90622 * 180.02562 * 3 2 1 5 5 C 1.40888 * 118.15992 * 0.02562 * 4 3 2 6 6 C 1.40181 * 121.22645 * 180.23387 * 5 4 3 7 7 C 1.38546 * 119.40310 * 180.24565 * 6 5 4 8 8 C 1.47755 * 119.80821 * 179.77391 * 7 6 5 9 9 O 1.21574 * 119.99784 * 323.60184 * 8 7 6 10 10 N 1.34781 * 120.00587 * 143.60277 * 8 7 6 11 11 C 1.46920 * 120.63505 * 174.31608 * 10 8 7 12 12 C 1.53191 * 108.89567 * 126.46519 * 11 10 8 13 13 C 1.53035 * 109.31147 * 54.56219 * 12 11 10 14 14 N 1.46504 * 109.46129 * 178.63169 * 13 12 11 15 15 C 1.36932 * 120.00049 * 205.00196 * 14 13 12 16 16 H 1.08000 * 120.00090 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00128 * 179.97438 * 15 14 13 18 18 N 1.31623 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00261 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47139 * 59.99973 * 19 17 15 21 21 H 1.48503 * 109.47393 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47103 * 300.00189 * 19 17 15 23 23 C 1.53044 * 109.53824 * 298.63445 * 13 12 11 24 24 C 1.46964 * 120.64661 * 354.13274 * 10 8 7 25 25 C 1.40631 * 120.39023 * 359.49652 * 7 6 5 26 26 C 1.35710 * 120.92040 * 0.27421 * 25 7 6 27 27 C 1.40757 * 120.10740 * 359.97438 * 26 25 7 28 28 N 1.31127 * 119.11414 * 180.02562 * 2 1 3 29 29 H 1.09010 * 109.47121 * 89.99697 * 1 2 3 30 30 H 1.08996 * 109.47275 * 210.00003 * 1 2 3 31 31 H 1.09001 * 109.47238 * 330.00247 * 1 2 3 32 32 H 1.08005 * 120.04361 * 0.04493 * 3 2 1 33 33 H 1.08002 * 120.91411 * 180.02562 * 4 3 2 34 34 H 1.08006 * 120.30004 * 0.02562 * 6 5 4 35 35 H 1.09003 * 109.58815 * 6.60772 * 11 10 8 36 36 H 1.08994 * 109.58814 * 246.32859 * 11 10 8 37 37 H 1.08994 * 109.49835 * 174.51668 * 12 11 10 38 38 H 1.09006 * 109.49580 * 294.60972 * 12 11 10 39 39 H 1.08992 * 109.46111 * 58.65669 * 13 12 11 40 40 H 0.96999 * 119.99505 * 24.99441 * 14 13 12 41 41 H 0.96995 * 120.00482 * 179.97438 * 18 17 15 42 42 H 1.09009 * 109.49531 * 181.31528 * 23 13 12 43 43 H 1.08991 * 109.49810 * 301.41119 * 23 13 12 44 44 H 1.09003 * 109.46069 * 113.75158 * 24 10 8 45 45 H 1.08996 * 109.71492 * 353.46362 * 24 10 8 46 46 H 1.07995 * 119.54339 * 180.25836 * 25 7 6 47 47 H 1.08000 * 119.94305 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2170 0.0000 4 6 3.5506 1.2358 -0.0005 5 6 4.2325 0.0029 -0.0016 6 6 5.6332 -0.0528 0.0027 7 6 6.2649 -1.2859 -0.0037 8 6 7.7408 -1.3551 -0.0043 9 8 8.3875 -0.5338 -0.6250 10 7 8.3702 -2.3286 0.6831 11 6 9.8281 -2.4864 0.5927 12 6 10.4161 -2.4834 2.0073 13 6 9.7189 -3.5558 2.8474 14 7 10.3013 -3.5780 4.1916 15 6 10.2406 -4.7195 4.9453 16 1 9.7630 -5.6035 4.5491 17 6 10.7929 -4.7407 6.2187 18 7 11.3745 -3.6633 6.7018 19 14 10.7107 -6.2982 7.2467 20 1 11.4087 -7.3987 6.5346 21 1 11.3672 -6.0614 8.5575 22 1 9.2904 -6.6726 7.4654 23 6 8.2249 -3.2387 2.9447 24 6 7.6120 -3.2503 1.5408 25 6 5.5096 -2.4722 -0.0038 26 6 4.1530 -2.4351 -0.0032 27 6 3.4804 -1.1986 -0.0019 28 7 2.1450 -1.1456 -0.0005 29 1 -0.3634 0.0001 -1.0278 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6312 2.1444 0.0007 33 1 4.0927 2.1699 -0.0001 34 1 6.2148 0.8573 0.0073 35 1 10.2502 -1.6606 0.0199 36 1 10.0638 -3.4301 0.1010 37 1 11.4838 -2.6969 1.9579 38 1 10.2609 -1.5057 2.4637 39 1 9.8536 -4.5298 2.3773 40 1 10.7300 -2.7839 4.5475 41 1 11.7601 -3.6779 7.5917 42 1 7.7330 -3.9901 3.5626 43 1 8.0903 -2.2541 3.3923 44 1 7.6648 -4.2575 1.1273 45 1 6.5712 -2.9311 1.5938 46 1 6.0161 -3.4260 -0.0046 47 1 3.5886 -3.3559 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997109953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:39 Heat of formation + Delta-G solvation = 16.059873 kcal Electronic energy + Delta-G solvation = -28483.024317 eV Core-core repulsion = 24629.952954 eV Total energy + Delta-G solvation = -3853.071363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13647 -41.15801 -38.87775 -38.02993 -36.20363 -34.58992 -33.98703 -33.15773 -31.95552 -31.23348 -30.98405 -29.02096 -26.72393 -25.19907 -24.89153 -24.22522 -23.51600 -23.09223 -21.83010 -20.52662 -19.51725 -19.09730 -18.41101 -17.65766 -17.17646 -16.68107 -16.60833 -16.27577 -15.70338 -15.64920 -15.42402 -15.38764 -15.26694 -14.94897 -14.76157 -14.55018 -14.24509 -14.01264 -13.94027 -13.69750 -13.30608 -13.25157 -13.07456 -12.99861 -12.80244 -12.70699 -12.46086 -12.26258 -12.22511 -12.10925 -12.00148 -11.70924 -11.57602 -11.32482 -11.09611 -10.83006 -10.53190 -9.80881 -9.67550 -9.31944 -9.00147 -7.92639 -5.21530 -0.80171 -0.36483 0.85039 1.34902 1.48437 1.51039 1.56908 1.80793 2.12362 2.57339 2.99951 3.14040 3.32511 3.40771 3.53204 3.65464 3.79022 3.83758 3.88613 3.96764 3.98906 4.07202 4.14980 4.24287 4.35517 4.38174 4.39010 4.59535 4.65990 4.75234 4.78366 4.81147 4.82130 4.84043 4.86158 4.92112 4.98834 5.00962 5.05613 5.17670 5.19141 5.21745 5.30374 5.46888 5.50976 5.53842 5.59640 5.74477 6.28008 6.29985 6.89048 6.98477 7.34683 8.10541 8.33383 9.30878 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002413 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.280068 B =11599.076747 C =12681.319810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.172 4.172 4 C -0.051 4.051 5 C -0.133 4.133 6 C -0.033 4.033 7 C -0.145 4.145 8 C 0.559 3.441 9 O -0.577 6.577 10 N -0.598 5.598 11 C 0.122 3.878 12 C -0.128 4.128 13 C 0.173 3.827 14 N -0.739 5.739 15 C -0.235 4.235 16 H 0.081 0.919 17 C -0.080 4.080 18 N -0.973 5.973 19 Si 0.972 3.028 20 H -0.277 1.277 21 H -0.300 1.300 22 H -0.277 1.277 23 C -0.141 4.141 24 C 0.103 3.897 25 C -0.074 4.074 26 C -0.104 4.104 27 C 0.129 3.871 28 N -0.508 5.508 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.369 0.631 41 H 0.249 0.751 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.160 0.840 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.640 7.771 -17.911 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.005 3.995 3 C -0.191 4.191 4 C -0.076 4.076 5 C -0.136 4.136 6 C -0.053 4.053 7 C -0.148 4.148 8 C 0.349 3.651 9 O -0.459 6.459 10 N -0.329 5.329 11 C 0.000 4.000 12 C -0.167 4.167 13 C 0.065 3.935 14 N -0.378 5.378 15 C -0.366 4.366 16 H 0.099 0.901 17 C -0.272 4.272 18 N -0.624 5.624 19 Si 0.801 3.199 20 H -0.203 1.203 21 H -0.227 1.227 22 H -0.203 1.203 23 C -0.182 4.182 24 C -0.019 4.019 25 C -0.094 4.094 26 C -0.123 4.123 27 C 0.008 3.992 28 N -0.219 5.219 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.193 0.807 33 H 0.184 0.816 34 H 0.159 0.841 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.178 0.822 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.688 7.125 -18.173 29.179 hybrid contribution 1.204 0.415 1.266 1.796 sum -20.484 7.541 -16.907 27.610 Atomic orbital electron populations 1.20923 0.86186 1.04800 1.04431 1.22267 0.98928 0.88218 0.90043 1.22130 0.94748 1.00322 1.01939 1.21925 0.95280 0.97369 0.93015 1.18940 0.93986 0.95429 1.05207 1.21446 0.92911 0.97556 0.93382 1.19832 0.92179 0.95335 1.07413 1.18562 0.87845 0.80030 0.78618 1.90742 1.68140 1.40809 1.46180 1.48111 1.08327 1.31626 1.44806 1.21602 0.78637 1.03500 0.96296 1.22061 1.00514 0.98890 0.95256 1.20435 0.91232 0.96890 0.84963 1.42672 1.68367 1.12596 1.14131 1.19607 1.29161 0.91808 0.96058 0.90135 1.25572 1.01992 1.00312 0.99303 1.69822 1.45038 1.29645 1.17881 0.85236 0.77710 0.79391 0.77582 1.20284 1.22681 1.20316 1.22474 0.98490 1.01053 0.96181 1.22367 0.96295 0.94097 0.89115 1.21270 0.93719 0.98078 0.96318 1.20876 0.93699 0.97047 1.00631 1.19254 0.89679 0.93566 0.96730 1.67959 1.08178 1.30203 1.15535 0.88727 0.90770 0.87864 0.80723 0.81608 0.84071 0.89593 0.88897 0.90612 0.93488 0.92685 0.79933 0.94219 0.91355 0.94211 0.88320 0.87682 0.82245 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.14 71.24 0.72 -0.17 16 2 C 0.16 2.48 6.78 42.92 0.29 2.77 16 3 C -0.17 -2.12 9.64 22.14 0.21 -1.90 16 4 C -0.05 -0.77 9.89 22.53 0.22 -0.54 16 5 C -0.13 -2.83 5.74 -21.29 -0.12 -2.95 16 6 C -0.03 -0.77 9.36 22.82 0.21 -0.55 16 7 C -0.14 -3.52 5.26 -20.10 -0.11 -3.63 16 8 C 0.56 16.16 7.35 86.76 0.64 16.80 16 9 O -0.58 -20.29 16.24 -3.95 -0.06 -20.36 16 10 N -0.60 -15.90 2.98 -822.32 -2.45 -18.35 16 11 C 0.12 3.29 6.44 86.36 0.56 3.85 16 12 C -0.13 -4.17 5.55 30.67 0.17 -4.00 16 13 C 0.17 6.41 2.73 45.02 0.12 6.54 16 14 N -0.74 -36.40 5.12 -322.82 -1.65 -38.05 16 15 C -0.23 -12.62 9.93 84.03 0.83 -11.79 16 16 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 17 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 18 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 19 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 C -0.14 -4.59 5.66 30.67 0.17 -4.42 16 24 C 0.10 2.45 4.76 86.35 0.41 2.86 16 25 C -0.07 -1.47 7.24 22.27 0.16 -1.31 16 26 C -0.10 -2.09 9.95 22.30 0.22 -1.86 16 27 C 0.13 2.92 6.61 40.35 0.27 3.19 16 28 N -0.51 -11.02 10.23 -176.59 -1.81 -12.83 16 29 H 0.09 0.58 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.35 8.07 -2.39 -0.02 0.33 16 32 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.14 3.08 8.00 -2.91 -0.02 3.05 16 35 H 0.09 2.44 7.00 -2.39 -0.02 2.42 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 40 H 0.37 20.05 7.80 -92.71 -0.72 19.33 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 1.86 8.04 -2.39 -0.02 1.84 16 45 H 0.11 2.22 4.51 -2.39 -0.01 2.21 16 46 H 0.16 2.47 6.08 -2.91 -0.02 2.46 16 47 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -73.87 381.92 2.07 -71.81 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.27 Total: 30.76 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.46 Total: -1.21 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.63 Total: -128.58 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -73.87 2.07 -71.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997109953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.866 kcal (2) G-P(sol) polarization free energy of solvation -73.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds