Wall clock time and date at job start Tue Mar 31 2020 22:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36614 * 120.92198 * 2 1 4 4 C 1.39271 * 119.90759 * 179.97438 * 3 2 1 5 5 N 1.31149 * 121.76975 * 359.97438 * 4 3 2 6 6 C 1.33617 * 121.39426 * 0.02562 * 5 4 3 7 7 C 1.40764 * 120.84018 * 180.02562 * 6 5 4 8 8 C 1.35702 * 120.11296 * 179.97438 * 7 6 5 9 9 C 1.40632 * 120.92375 * 0.02562 * 8 7 6 10 10 C 1.47773 * 119.79732 * 179.97438 * 9 8 7 11 11 O 1.21570 * 119.99628 * 147.39897 * 10 9 8 12 12 N 1.34775 * 120.00214 * 327.39952 * 10 9 8 13 13 C 1.46494 * 119.99938 * 4.22877 * 12 10 9 14 14 C 1.46501 * 119.99679 * 184.22785 * 12 10 9 15 15 C 1.53784 * 113.61172 * 217.49298 * 14 12 10 16 16 C 1.53775 * 87.08172 * 220.02309 * 15 14 12 17 17 N 1.46501 * 113.61320 * 139.98365 * 16 15 14 18 18 C 1.36937 * 119.99748 * 107.50112 * 17 16 15 19 19 H 1.07996 * 120.00610 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99978 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99886 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46986 * 59.99904 * 22 20 18 24 24 H 1.48495 * 109.47404 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47106 * 300.00349 * 22 20 18 26 26 C 1.53778 * 87.08395 * 25.43496 * 16 15 14 27 27 C 1.38542 * 120.40129 * 0.02562 * 9 8 7 28 28 C 1.40189 * 119.39645 * 359.97230 * 27 9 8 29 29 H 1.08998 * 109.47259 * 90.00083 * 1 2 3 30 30 H 1.09000 * 109.47448 * 210.00144 * 1 2 3 31 31 H 1.09002 * 109.47129 * 330.00352 * 1 2 3 32 32 H 1.08007 * 120.04656 * 359.95572 * 3 2 1 33 33 H 1.07991 * 119.11582 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.94319 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.53437 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47216 * 95.31786 * 13 12 10 37 37 H 1.08996 * 109.47624 * 215.31677 * 13 12 10 38 38 H 1.09003 * 109.47365 * 335.32057 * 13 12 10 39 39 H 1.08992 * 112.85530 * 348.80901 * 14 12 10 40 40 H 1.08996 * 113.61712 * 334.57751 * 15 14 12 41 41 H 1.09002 * 113.60819 * 105.47565 * 15 14 12 42 42 H 1.09000 * 113.69476 * 270.87474 * 16 15 14 43 43 H 0.97001 * 120.00198 * 287.50574 * 17 16 15 44 44 H 0.96993 * 120.00236 * 179.97438 * 21 20 18 45 45 H 1.08998 * 113.61957 * 220.01632 * 26 16 15 46 46 H 1.08998 * 113.61232 * 89.11263 * 26 16 15 47 47 H 1.08003 * 120.30533 * 179.70099 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 0.0005 5 7 4.2721 0.0203 0.0016 6 6 3.6479 -1.1611 0.0016 7 6 4.3794 -2.3638 0.0032 8 6 3.7303 -3.5555 0.0038 9 6 2.3252 -3.6130 0.0022 10 6 1.6439 -4.9244 0.0023 11 8 0.5760 -5.0545 0.5684 12 7 2.2066 -5.9761 -0.6252 13 6 3.5354 -5.8445 -1.2276 14 6 1.4891 -7.2510 -0.7048 15 6 2.4017 -8.4810 -0.5661 16 6 1.5531 -9.1369 -1.6681 17 7 2.3398 -9.9085 -2.6335 18 6 2.2901 -11.2769 -2.6194 19 1 1.6706 -11.7873 -1.8969 20 6 3.0351 -12.0080 -3.5345 21 7 3.7897 -11.3859 -4.4154 22 14 2.9668 -13.8746 -3.5158 23 1 1.5702 -14.3212 -3.7517 24 1 3.8463 -14.4129 -4.5843 25 1 3.4297 -14.3737 -2.1960 26 6 1.2152 -7.7147 -2.1453 27 6 1.5757 -2.4478 -0.0005 28 6 2.2308 -1.2084 -0.0010 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6848 2.1163 -0.0007 33 1 4.1436 2.0813 0.0001 34 1 5.4592 -2.3380 0.0041 35 1 4.3008 -4.4725 0.0046 36 1 4.2896 -6.1988 -0.5248 37 1 3.5813 -6.4389 -2.1400 38 1 3.7243 -4.7977 -1.4659 39 1 0.6100 -7.2829 -0.0613 40 1 3.4339 -8.2946 -0.8625 41 1 2.3210 -8.9776 0.4009 42 1 0.6915 -9.6864 -1.2888 43 1 2.8960 -9.4500 -3.2827 44 1 4.3105 -11.8967 -5.0546 45 1 0.1768 -7.5925 -2.4533 46 1 1.9231 -7.3188 -2.8735 47 1 0.4967 -2.4938 -0.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998821445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:11 Heat of formation + Delta-G solvation = 73.104607 kcal Electronic energy + Delta-G solvation = -28253.558801 eV Core-core repulsion = 24402.961084 eV Total energy + Delta-G solvation = -3850.597718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41935 -40.21953 -38.25369 -36.96187 -35.16347 -34.82652 -33.18338 -31.08667 -30.76558 -29.89889 -28.28912 -27.25643 -25.51444 -25.13086 -24.12323 -23.89546 -22.39590 -21.36693 -20.14449 -19.00105 -18.60950 -17.55760 -17.15957 -17.02073 -16.36567 -15.96040 -15.44825 -14.94149 -14.88646 -14.73092 -14.58392 -14.36916 -14.12258 -13.78423 -13.49766 -13.23235 -13.18425 -13.05157 -12.92372 -12.82841 -12.37803 -12.19540 -12.06150 -11.90651 -11.72836 -11.31122 -11.26910 -10.90835 -10.61796 -10.55072 -10.48137 -10.31349 -10.06572 -9.88776 -9.82497 -9.58511 -9.09289 -8.92029 -8.64138 -8.42299 -7.01863 -5.82534 -3.11542 -0.09153 0.34491 1.56155 2.18839 2.87983 3.07496 3.41493 3.46213 3.46934 3.73896 3.91005 4.10252 4.22566 4.27215 4.38876 4.56053 4.67740 4.69724 4.81916 4.97401 5.05082 5.07669 5.09831 5.12502 5.14478 5.29532 5.33953 5.40494 5.46550 5.52641 5.57637 5.63124 5.67137 5.70908 5.82600 5.90407 5.93685 5.97995 6.12107 6.14684 6.25820 6.30334 6.37660 6.43974 6.53457 6.74533 6.99598 7.42686 7.54327 7.66057 8.09663 8.35838 9.47195 10.03506 10.38194 11.39691 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.002028 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.535707 B =13803.484930 C =14365.818277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.012 4.012 3 C -0.188 4.188 4 C 0.142 3.858 5 N -0.482 5.482 6 C 0.145 3.855 7 C -0.101 4.101 8 C -0.088 4.088 9 C -0.125 4.125 10 C 0.555 3.445 11 O -0.540 6.540 12 N -0.589 5.589 13 C 0.056 3.944 14 C 0.115 3.885 15 C -0.174 4.174 16 C 0.170 3.830 17 N -0.709 5.709 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.163 4.163 27 C -0.034 4.034 28 C -0.112 4.112 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 26.801 9.061 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.020 4.020 3 C -0.207 4.207 4 C -0.030 4.030 5 N -0.191 5.191 6 C 0.024 3.976 7 C -0.119 4.119 8 C -0.107 4.107 9 C -0.129 4.129 10 C 0.344 3.656 11 O -0.419 6.419 12 N -0.319 5.319 13 C -0.086 4.086 14 C 0.012 3.988 15 C -0.216 4.216 16 C 0.057 3.943 17 N -0.347 5.347 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.203 4.203 27 C -0.053 4.053 28 C -0.114 4.114 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.723 26.370 9.335 28.027 hybrid contribution -0.494 -0.765 -0.304 0.960 sum -2.216 25.605 9.031 27.241 Atomic orbital electron populations 1.20954 0.89734 1.04018 1.03517 1.20255 0.96818 0.92014 0.92939 1.21765 0.95635 0.98792 1.04547 1.22994 0.91522 0.96493 0.91993 1.68077 1.39894 0.97712 1.13387 1.19011 0.89535 0.92620 0.96483 1.20722 1.00651 0.89685 1.00880 1.21615 0.93337 0.99384 0.96386 1.19967 0.94006 0.93742 1.05142 1.18281 0.84838 0.83708 0.78800 1.90767 1.22258 1.84385 1.44464 1.47743 1.18432 1.11463 1.54280 1.22454 0.83508 1.03203 0.99447 1.22676 0.96733 0.80657 0.98685 1.24323 1.00173 0.95320 1.01775 1.21332 0.93675 0.89235 0.90047 1.42343 1.52012 1.03302 1.37039 1.19266 1.22406 0.82626 1.13334 0.91038 1.24769 0.99716 0.98079 0.98280 1.69640 1.32324 1.34484 1.21605 0.86250 0.77332 0.85428 0.77067 1.21199 1.21690 1.21205 1.23938 1.01563 0.99018 0.95785 1.21383 1.00411 0.89720 0.93819 1.18651 0.94129 0.93881 1.04733 0.89826 0.90318 0.90402 0.84394 0.82267 0.84028 0.83045 0.91747 0.90088 0.89598 0.86658 0.89812 0.92041 0.90210 0.78107 0.93383 0.91695 0.90021 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 9.59 36.00 0.35 -0.38 16 2 C -0.01 -0.10 5.92 -104.22 -0.62 -0.72 16 3 C -0.19 -1.28 9.72 -39.78 -0.39 -1.67 16 4 C 0.14 1.11 11.14 -17.46 -0.19 0.91 16 5 N -0.48 -5.15 10.33 -10.92 -0.11 -5.26 16 6 C 0.14 1.61 6.61 -84.78 -0.56 1.05 16 7 C -0.10 -1.01 9.95 -39.54 -0.39 -1.40 16 8 C -0.09 -0.87 7.31 -39.59 -0.29 -1.16 16 9 C -0.13 -1.50 5.45 -104.98 -0.57 -2.07 16 10 C 0.56 8.00 7.42 -12.36 -0.09 7.90 16 11 O -0.54 -9.39 16.22 5.30 0.09 -9.31 16 12 N -0.59 -8.03 3.08 -174.14 -0.54 -8.56 16 13 C 0.06 0.62 7.33 59.84 0.44 1.06 16 14 C 0.12 1.76 4.22 -67.11 -0.28 1.47 16 15 C -0.17 -2.89 7.35 -25.92 -0.19 -3.08 16 16 C 0.17 3.25 4.48 -67.12 -0.30 2.95 16 17 N -0.71 -17.16 5.40 -52.64 -0.28 -17.44 16 18 C -0.25 -6.65 9.97 -15.06 -0.15 -6.80 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 22 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.16 -2.66 7.40 -25.92 -0.19 -2.85 16 27 C -0.03 -0.37 8.88 -38.74 -0.34 -0.72 16 28 C -0.11 -1.18 5.74 -106.81 -0.61 -1.79 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.49 6.52 -51.93 -0.34 0.15 16 31 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 33 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.15 1.27 4.83 -52.49 -0.25 1.01 16 36 H 0.06 0.63 7.37 -51.93 -0.38 0.24 16 37 H 0.08 0.96 6.58 -51.93 -0.34 0.62 16 38 H 0.09 0.80 4.69 -51.93 -0.24 0.56 16 39 H 0.12 1.84 7.21 -51.93 -0.37 1.46 16 40 H 0.08 1.42 6.79 -51.93 -0.35 1.06 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 43 H 0.38 9.82 7.92 -40.82 -0.32 9.50 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.34 6.84 -51.93 -0.36 0.99 16 47 H 0.14 1.47 6.33 -52.48 -0.33 1.14 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -33.23 378.95 -10.15 -43.38 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.22 Total: 8.99 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -4.49 Total: -7.73 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.21 Total: -58.06 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.23 -10.15 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998821445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.487 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds