Wall clock time and date at job start Tue Mar 31 2020 22:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36614 * 120.92198 * 2 1 4 4 C 1.39271 * 119.90759 * 179.97438 * 3 2 1 5 5 N 1.31149 * 121.76975 * 359.97438 * 4 3 2 6 6 C 1.33617 * 121.39426 * 0.02562 * 5 4 3 7 7 C 1.40764 * 120.84018 * 180.02562 * 6 5 4 8 8 C 1.35702 * 120.11296 * 179.97438 * 7 6 5 9 9 C 1.40632 * 120.92375 * 0.02562 * 8 7 6 10 10 C 1.47773 * 119.79732 * 179.97438 * 9 8 7 11 11 O 1.21570 * 119.99628 * 147.39897 * 10 9 8 12 12 N 1.34775 * 120.00214 * 327.39952 * 10 9 8 13 13 C 1.46494 * 119.99938 * 4.22877 * 12 10 9 14 14 C 1.46501 * 119.99679 * 184.22785 * 12 10 9 15 15 C 1.53784 * 113.61172 * 217.49298 * 14 12 10 16 16 C 1.53775 * 87.08172 * 220.02309 * 15 14 12 17 17 N 1.46501 * 113.61320 * 139.98365 * 16 15 14 18 18 C 1.36937 * 119.99748 * 107.50112 * 17 16 15 19 19 H 1.07996 * 120.00610 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99978 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99886 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46986 * 59.99904 * 22 20 18 24 24 H 1.48495 * 109.47404 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47106 * 300.00349 * 22 20 18 26 26 C 1.53778 * 87.08395 * 25.43496 * 16 15 14 27 27 C 1.38542 * 120.40129 * 0.02562 * 9 8 7 28 28 C 1.40189 * 119.39645 * 359.97230 * 27 9 8 29 29 H 1.08998 * 109.47259 * 90.00083 * 1 2 3 30 30 H 1.09000 * 109.47448 * 210.00144 * 1 2 3 31 31 H 1.09002 * 109.47129 * 330.00352 * 1 2 3 32 32 H 1.08007 * 120.04656 * 359.95572 * 3 2 1 33 33 H 1.07991 * 119.11582 * 179.97438 * 4 3 2 34 34 H 1.08003 * 119.94319 * 359.97438 * 7 6 5 35 35 H 1.07999 * 119.53437 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47216 * 95.31786 * 13 12 10 37 37 H 1.08996 * 109.47624 * 215.31677 * 13 12 10 38 38 H 1.09003 * 109.47365 * 335.32057 * 13 12 10 39 39 H 1.08992 * 112.85530 * 348.80901 * 14 12 10 40 40 H 1.08996 * 113.61712 * 334.57751 * 15 14 12 41 41 H 1.09002 * 113.60819 * 105.47565 * 15 14 12 42 42 H 1.09000 * 113.69476 * 270.87474 * 16 15 14 43 43 H 0.97001 * 120.00198 * 287.50574 * 17 16 15 44 44 H 0.96993 * 120.00236 * 179.97438 * 21 20 18 45 45 H 1.08998 * 113.61957 * 220.01632 * 26 16 15 46 46 H 1.08998 * 113.61232 * 89.11263 * 26 16 15 47 47 H 1.08003 * 120.30533 * 179.70099 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 0.0005 5 7 4.2721 0.0203 0.0016 6 6 3.6479 -1.1611 0.0016 7 6 4.3794 -2.3638 0.0032 8 6 3.7303 -3.5555 0.0038 9 6 2.3252 -3.6130 0.0022 10 6 1.6439 -4.9244 0.0023 11 8 0.5760 -5.0545 0.5684 12 7 2.2066 -5.9761 -0.6252 13 6 3.5354 -5.8445 -1.2276 14 6 1.4891 -7.2510 -0.7048 15 6 2.4017 -8.4810 -0.5661 16 6 1.5531 -9.1369 -1.6681 17 7 2.3398 -9.9085 -2.6335 18 6 2.2901 -11.2769 -2.6194 19 1 1.6706 -11.7873 -1.8969 20 6 3.0351 -12.0080 -3.5345 21 7 3.7897 -11.3859 -4.4154 22 14 2.9668 -13.8746 -3.5158 23 1 1.5702 -14.3212 -3.7517 24 1 3.8463 -14.4129 -4.5843 25 1 3.4297 -14.3737 -2.1960 26 6 1.2152 -7.7147 -2.1453 27 6 1.5757 -2.4478 -0.0005 28 6 2.2308 -1.2084 -0.0010 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6848 2.1163 -0.0007 33 1 4.1436 2.0813 0.0001 34 1 5.4592 -2.3380 0.0041 35 1 4.3008 -4.4725 0.0046 36 1 4.2896 -6.1988 -0.5248 37 1 3.5813 -6.4389 -2.1400 38 1 3.7243 -4.7977 -1.4659 39 1 0.6100 -7.2829 -0.0613 40 1 3.4339 -8.2946 -0.8625 41 1 2.3210 -8.9776 0.4009 42 1 0.6915 -9.6864 -1.2888 43 1 2.8960 -9.4500 -3.2827 44 1 4.3105 -11.8967 -5.0546 45 1 0.1768 -7.5925 -2.4533 46 1 1.9231 -7.3188 -2.8735 47 1 0.4967 -2.4938 -0.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998821445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:09 Heat of formation + Delta-G solvation = 53.255630 kcal Electronic energy + Delta-G solvation = -28254.419518 eV Core-core repulsion = 24402.961084 eV Total energy + Delta-G solvation = -3851.458434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.20586 -41.27535 -39.53396 -37.83532 -36.30930 -35.67478 -34.90655 -32.23146 -31.51264 -31.44198 -28.86313 -28.26181 -26.80293 -26.46423 -25.63964 -24.60926 -23.71886 -22.07533 -21.32146 -20.30528 -19.54397 -19.03630 -18.37806 -18.03308 -17.35437 -16.89172 -16.48966 -16.41748 -15.99227 -15.63729 -15.57234 -15.43884 -15.15189 -14.91715 -14.59020 -14.38258 -14.17745 -14.00839 -13.79389 -13.56835 -13.51408 -13.24130 -13.18354 -13.12682 -12.82861 -12.70806 -12.52332 -12.28591 -12.18798 -12.13908 -11.94849 -11.68421 -11.44760 -11.18139 -10.97237 -10.85938 -10.51719 -9.84011 -9.69829 -9.25708 -8.98803 -7.94183 -5.22330 -0.81979 -0.36218 0.82928 1.35355 1.48934 1.51052 1.57046 1.82827 2.12341 2.57582 3.01444 3.23545 3.36331 3.37197 3.47406 3.63389 3.72846 3.77305 3.79284 3.92225 3.94014 4.00899 4.11540 4.25275 4.27432 4.32880 4.44665 4.50057 4.54715 4.69822 4.70061 4.74367 4.77015 4.85101 4.86698 4.89039 4.93109 5.00312 5.06080 5.12504 5.13926 5.17004 5.32052 5.39812 5.48639 5.51942 5.63081 5.75347 6.27491 6.31415 6.88594 6.98127 7.34532 8.09402 8.33470 9.28544 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.002028 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.535707 B =13803.484930 C =14365.818277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.022 4.022 3 C -0.180 4.180 4 C 0.143 3.857 5 N -0.512 5.512 6 C 0.127 3.873 7 C -0.104 4.104 8 C -0.086 4.086 9 C -0.144 4.144 10 C 0.556 3.444 11 O -0.577 6.577 12 N -0.588 5.588 13 C 0.052 3.948 14 C 0.130 3.870 15 C -0.160 4.160 16 C 0.154 3.846 17 N -0.722 5.722 18 C -0.245 4.245 19 H 0.076 0.924 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.297 1.297 25 H -0.279 1.279 26 C -0.150 4.150 27 C -0.034 4.034 28 C -0.129 4.129 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.174 0.826 33 H 0.193 0.807 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 28.950 9.821 30.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.028 4.028 5 N -0.221 5.221 6 C 0.006 3.994 7 C -0.122 4.122 8 C -0.106 4.106 9 C -0.147 4.147 10 C 0.346 3.654 11 O -0.458 6.458 12 N -0.318 5.318 13 C -0.089 4.089 14 C 0.026 3.974 15 C -0.202 4.202 16 C 0.043 3.957 17 N -0.359 5.359 18 C -0.377 4.377 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.800 3.200 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.205 1.205 26 C -0.190 4.190 27 C -0.053 4.053 28 C -0.131 4.131 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.192 0.808 33 H 0.210 0.790 34 H 0.174 0.826 35 H 0.184 0.816 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.129 0.871 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.208 0.792 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.100 0.900 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.792 28.545 10.131 30.343 hybrid contribution -0.527 -1.207 -0.486 1.404 sum -2.319 27.338 9.645 29.082 Atomic orbital electron populations 1.21009 0.88173 1.04693 1.04197 1.20608 0.98086 0.91725 0.92616 1.22170 0.95389 0.99750 1.02608 1.23675 0.92441 0.96877 0.89836 1.68124 1.40670 0.98267 1.15026 1.19291 0.90007 0.93338 0.96769 1.20919 1.01373 0.89439 1.00487 1.21666 0.92473 1.00094 0.96334 1.19836 0.94855 0.92517 1.07463 1.18640 0.84372 0.84465 0.77946 1.90738 1.23949 1.85028 1.46131 1.47745 1.19190 1.10677 1.54163 1.22656 0.82464 1.04454 0.99321 1.22345 0.96274 0.81201 0.97539 1.24091 0.99889 0.95485 1.00689 1.21613 0.93711 0.90059 0.90314 1.42472 1.52716 1.02749 1.37988 1.19651 1.21282 0.84158 1.12581 0.90567 1.25536 1.00272 1.02234 0.98626 1.69788 1.33671 1.35696 1.22612 0.85247 0.77256 0.80553 0.76912 1.20549 1.22286 1.20465 1.23782 1.01867 0.96842 0.96546 1.21470 1.00502 0.90010 0.93359 1.18828 0.94321 0.94467 1.05488 0.89037 0.91204 0.88181 0.80824 0.79015 0.82631 0.81605 0.90094 0.90954 0.87729 0.87137 0.89876 0.91637 0.90345 0.79224 0.94023 0.91157 0.90017 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.59 71.23 0.68 -0.52 16 2 C -0.02 -0.33 5.92 -19.60 -0.12 -0.44 16 3 C -0.18 -1.90 9.72 22.14 0.22 -1.69 16 4 C 0.14 1.84 11.14 85.04 0.95 2.79 16 5 N -0.51 -10.14 10.33 -188.46 -1.95 -12.09 16 6 C 0.13 2.71 6.61 40.37 0.27 2.98 16 7 C -0.10 -1.98 9.95 22.30 0.22 -1.76 16 8 C -0.09 -1.65 7.31 22.27 0.16 -1.49 16 9 C -0.14 -3.40 5.45 -20.10 -0.11 -3.51 16 10 C 0.56 15.96 7.42 86.77 0.64 16.61 16 11 O -0.58 -20.34 16.22 -3.94 -0.06 -20.40 16 12 N -0.59 -15.72 3.08 -823.13 -2.54 -18.26 16 13 C 0.05 1.10 7.33 127.77 0.94 2.03 16 14 C 0.13 3.91 4.22 45.52 0.19 4.10 16 15 C -0.16 -5.23 7.35 31.12 0.23 -5.00 16 16 C 0.15 5.87 4.48 45.51 0.20 6.07 16 17 N -0.72 -35.22 5.40 -320.46 -1.73 -36.95 16 18 C -0.24 -13.32 9.97 84.04 0.84 -12.48 16 19 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 20 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 21 N -0.97 -57.98 13.06 21.65 0.28 -57.70 16 22 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 C -0.15 -4.87 7.40 31.12 0.23 -4.64 16 27 C -0.03 -0.75 8.88 22.82 0.20 -0.55 16 28 C -0.13 -2.61 5.74 -21.28 -0.12 -2.73 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.81 6.52 -2.39 -0.02 0.79 16 31 H 0.10 0.51 8.10 -2.39 -0.02 0.49 16 32 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.17 2.55 4.83 -2.91 -0.01 2.54 16 36 H 0.08 1.45 7.37 -2.38 -0.02 1.43 16 37 H 0.07 1.67 6.58 -2.39 -0.02 1.66 16 38 H 0.10 1.83 4.69 -2.39 -0.01 1.82 16 39 H 0.11 3.50 7.21 -2.39 -0.02 3.48 16 40 H 0.08 2.76 6.79 -2.39 -0.02 2.74 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 43 H 0.38 19.51 7.92 -92.71 -0.73 18.77 16 44 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.08 2.67 6.84 -2.39 -0.02 2.65 16 47 H 0.14 3.01 6.33 -2.91 -0.02 2.99 16 Total: -1.00 -72.33 378.95 2.41 -69.92 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.28 Total: 31.82 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 6.09 Total: -3.95 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -5.93 Total: -124.99 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -72.33 2.41 -69.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998821445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.176 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds