Wall clock time and date at job start Tue Mar 31 2020 22:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30832 * 119.22560 * 2 1 4 4 C 1.33795 * 121.71445 * 179.97438 * 3 2 1 5 5 C 1.40532 * 120.81982 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.80786 * 179.97438 * 5 4 3 7 7 C 1.39338 * 121.09660 * 359.97438 * 6 5 4 8 8 C 1.36138 * 120.83938 * 0.04124 * 7 6 5 9 9 C 1.40552 * 119.61657 * 359.95529 * 8 7 6 10 10 C 1.40498 * 121.22410 * 180.28296 * 9 8 7 11 11 C 1.39042 * 117.96114 * 180.21297 * 10 9 8 12 12 C 1.47755 * 120.26753 * 179.78848 * 11 10 9 13 13 O 1.21562 * 120.00352 * 229.32518 * 12 11 10 14 14 N 1.34776 * 119.99883 * 49.32013 * 12 11 10 15 15 C 1.46500 * 120.00357 * 5.24784 * 14 12 11 16 16 C 1.46502 * 119.99823 * 185.24292 * 14 12 11 17 17 C 1.53781 * 113.69158 * 198.80185 * 16 14 12 18 18 C 1.53779 * 87.08250 * 89.12875 * 17 16 14 19 19 N 1.46497 * 113.61301 * 270.88566 * 18 17 16 20 20 C 1.36938 * 119.99816 * 256.74736 * 19 18 17 21 21 H 1.07996 * 120.00453 * 359.97438 * 20 19 18 22 22 C 1.38822 * 119.99951 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99684 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47613 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47022 * 120.00199 * 24 22 20 27 27 H 1.48504 * 109.47050 * 239.99708 * 24 22 20 28 28 C 1.53780 * 113.61692 * 296.33790 * 16 14 12 29 29 H 1.09006 * 109.47469 * 273.53034 * 1 2 3 30 30 H 1.09001 * 109.47595 * 33.53748 * 1 2 3 31 31 H 1.09006 * 109.47234 * 153.53526 * 1 2 3 32 32 H 1.07991 * 120.09864 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.45008 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.58125 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.19289 * 179.97438 * 8 7 6 36 36 H 1.07994 * 121.01513 * 0.02562 * 10 9 8 37 37 H 1.08998 * 109.47173 * 264.63892 * 15 14 12 38 38 H 1.09001 * 109.46722 * 24.63825 * 15 14 12 39 39 H 1.08997 * 109.47414 * 144.63284 * 15 14 12 40 40 H 1.09002 * 112.84802 * 67.53387 * 16 14 12 41 41 H 1.09004 * 113.61775 * 203.68329 * 17 16 14 42 42 H 1.09000 * 113.61288 * 334.57837 * 17 16 14 43 43 H 1.08995 * 113.69077 * 139.99583 * 18 17 16 44 44 H 0.97005 * 120.00254 * 76.74979 * 19 18 17 45 45 H 0.97004 * 120.00134 * 180.02562 * 23 22 20 46 46 H 1.08997 * 113.61403 * 25.34269 * 28 16 14 47 47 H 1.09001 * 113.61172 * 156.25444 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1457 1.1418 0.0000 4 6 3.4824 1.1999 0.0005 5 6 4.1493 2.4369 0.0010 6 6 5.5102 2.4720 0.0021 7 6 6.2604 1.2978 0.0032 8 6 5.6511 0.0803 0.0024 9 6 4.2476 0.0061 0.0014 10 6 3.5838 -1.2322 0.0065 11 6 2.1934 -1.2266 0.0006 12 6 1.4434 -2.4997 0.0008 13 8 0.5471 -2.6773 -0.8009 14 7 1.7532 -3.4640 0.8899 15 6 2.7535 -3.2083 1.9293 16 6 1.0895 -4.7681 0.8170 17 6 1.1857 -5.5838 2.1171 18 6 -0.1132 -4.8880 2.5572 19 7 0.1088 -3.6284 3.2713 20 6 -0.0239 -3.5810 4.6334 21 1 -0.2927 -4.4721 5.1812 22 6 0.1860 -2.3872 5.3102 23 7 0.5120 -1.3009 4.6425 24 14 0.0042 -2.3225 7.1682 25 1 -0.3665 -3.6675 7.6765 26 1 1.2914 -1.9011 7.7771 27 1 -1.0563 -1.3472 7.5281 28 6 -0.4270 -4.7021 1.0632 29 1 -0.3634 0.0633 1.0257 30 1 -0.3634 0.8566 -0.5678 31 1 -0.3634 -0.9200 -0.4580 32 1 3.5840 3.3570 0.0015 33 1 6.0168 3.4258 0.0021 34 1 7.3390 1.3541 0.0044 35 1 6.2428 -0.8232 0.0028 36 1 4.1366 -2.1599 0.0117 37 1 3.7250 -3.5734 1.5962 38 1 2.8138 -2.1368 2.1197 39 1 2.4659 -3.7244 2.8453 40 1 1.3631 -5.3330 -0.0741 41 1 1.0766 -6.6581 1.9677 42 1 2.0486 -5.3265 2.7312 43 1 -0.8114 -5.5486 3.0711 44 1 0.3499 -2.8278 2.7794 45 1 0.6591 -0.4667 5.1154 46 1 -0.8660 -3.7329 0.8267 47 1 -0.9770 -5.5353 0.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998862677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:31 Heat of formation + Delta-G solvation = 72.667488 kcal Electronic energy + Delta-G solvation = -30288.435862 eV Core-core repulsion = 26437.819189 eV Total energy + Delta-G solvation = -3850.616673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07685 -39.96553 -38.03351 -36.81914 -34.51916 -33.51359 -32.90027 -31.78499 -30.26382 -29.80205 -27.68738 -26.90966 -25.22500 -24.82052 -23.86938 -22.74944 -22.48304 -22.01634 -20.21113 -18.36072 -17.94675 -17.38665 -17.18312 -16.40955 -15.98185 -15.68762 -15.38343 -14.81763 -14.63098 -14.45391 -14.33720 -13.90645 -13.75040 -13.43665 -13.09620 -13.02314 -12.95782 -12.80504 -12.45088 -12.19251 -11.85850 -11.79099 -11.66540 -11.47936 -11.41785 -11.34474 -11.11894 -10.91433 -10.79596 -10.38920 -10.24035 -10.12180 -9.89467 -9.71415 -9.57936 -9.18511 -8.92351 -8.59462 -8.25468 -8.17410 -7.02578 -5.83983 -3.13235 0.30182 0.74532 1.91532 2.67710 3.03447 3.36537 3.38307 3.45034 3.46888 4.11710 4.25330 4.49566 4.52738 4.60113 4.74782 4.77331 4.90442 5.04972 5.14363 5.19332 5.21802 5.42038 5.44451 5.45228 5.61261 5.68810 5.79267 5.80478 5.83584 5.87573 5.91249 5.94142 6.05359 6.14467 6.15185 6.28420 6.30121 6.33734 6.34585 6.40812 6.57784 6.60377 6.64227 6.74244 6.83401 6.87026 7.09187 7.66795 7.68007 8.03639 8.34475 8.42201 9.46349 10.03616 10.39553 11.37409 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.004303 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.698715 B = 6505.452452 C = 7775.379460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.220 3.780 3 N -0.481 5.481 4 C 0.148 3.852 5 C -0.098 4.098 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.085 4.085 9 C -0.116 4.116 10 C -0.020 4.020 11 C -0.166 4.166 12 C 0.569 3.431 13 O -0.532 6.532 14 N -0.575 5.575 15 C 0.068 3.932 16 C 0.127 3.873 17 C -0.184 4.184 18 C 0.164 3.836 19 N -0.705 5.705 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.008 4.008 23 N -0.926 5.926 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.161 4.161 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.387 0.613 45 H 0.255 0.745 46 H 0.076 0.924 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 0.637 -10.712 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.068 3.932 3 N -0.190 5.190 4 C 0.026 3.974 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.146 4.146 8 C -0.104 4.104 9 C -0.118 4.118 10 C -0.046 4.046 11 C -0.171 4.171 12 C 0.357 3.643 13 O -0.410 6.410 14 N -0.307 5.307 15 C -0.074 4.074 16 C 0.024 3.976 17 C -0.225 4.225 18 C 0.052 3.948 19 N -0.344 5.344 20 C -0.376 4.376 21 H 0.090 0.910 22 C -0.205 4.205 23 N -0.574 5.574 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.201 4.201 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.223 0.777 45 H 0.065 0.935 46 H 0.095 0.905 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.667 1.375 -10.904 14.637 hybrid contribution 0.713 -0.368 1.046 1.318 sum 10.380 1.007 -9.857 14.350 Atomic orbital electron populations 1.21161 0.87815 1.05076 1.04558 1.21438 0.97429 0.86159 0.88222 1.67868 1.08129 1.28102 1.14903 1.18979 0.89241 0.92948 0.96194 1.20807 0.94174 0.96435 1.00248 1.20905 0.93688 0.98664 0.98477 1.20853 1.00170 0.92337 1.01252 1.20995 0.92488 0.98528 0.98394 1.18726 0.94837 0.93627 1.04633 1.21907 0.92963 0.97613 0.92135 1.20747 0.94311 0.95348 1.06684 1.17943 0.82828 0.82649 0.80921 1.90703 1.30389 1.79947 1.39992 1.47377 1.40613 1.12667 1.30001 1.22138 0.89285 1.03436 0.92567 1.21802 0.94359 0.83263 0.98156 1.24244 1.03740 0.98460 0.96064 1.21164 0.93373 0.89588 0.90675 1.42309 1.81907 1.05904 1.04317 1.19315 1.40037 0.95166 0.83067 0.91023 1.24725 1.02286 0.95666 0.97802 1.69662 1.53707 0.99782 1.34259 0.86155 0.77231 0.77320 0.85675 1.20577 1.21940 1.21882 1.23709 0.94932 1.02785 0.98629 0.88981 0.90477 0.88071 0.84720 0.85426 0.85627 0.85275 0.83896 0.93974 0.90628 0.87694 0.91017 0.90038 0.90304 0.92052 0.77724 0.93525 0.90483 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.82 36.00 0.35 -1.89 16 2 C 0.22 3.99 6.82 -82.15 -0.56 3.43 16 3 N -0.48 -8.54 10.20 -6.94 -0.07 -8.61 16 4 C 0.15 2.34 6.61 -84.79 -0.56 1.78 16 5 C -0.10 -1.26 9.97 -39.47 -0.39 -1.65 16 6 C -0.10 -0.99 9.94 -39.93 -0.40 -1.39 16 7 C -0.13 -1.25 9.96 -39.93 -0.40 -1.65 16 8 C -0.09 -0.95 9.77 -39.46 -0.39 -1.33 16 9 C -0.12 -1.66 5.74 -106.81 -0.61 -2.27 16 10 C -0.02 -0.29 7.80 -38.43 -0.30 -0.59 16 11 C -0.17 -2.85 4.67 -104.83 -0.49 -3.34 16 12 C 0.57 10.36 6.43 -12.37 -0.08 10.28 16 13 O -0.53 -10.61 13.51 5.31 0.07 -10.54 16 14 N -0.58 -9.85 2.10 -174.15 -0.37 -10.21 16 15 C 0.07 1.13 7.51 59.85 0.45 1.58 16 16 C 0.13 2.08 4.17 -67.12 -0.28 1.80 16 17 C -0.18 -2.93 7.16 -25.92 -0.19 -3.11 16 18 C 0.16 3.17 4.55 -67.12 -0.31 2.86 16 19 N -0.70 -16.69 3.86 -52.64 -0.20 -16.90 16 20 C -0.24 -6.44 9.98 -15.06 -0.15 -6.59 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 24 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C -0.16 -2.81 7.10 -25.92 -0.18 -3.00 16 29 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.83 5.31 -51.93 -0.28 1.56 16 32 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.70 7.06 -52.49 -0.37 1.33 16 37 H 0.04 0.56 7.61 -51.93 -0.39 0.16 16 38 H 0.08 1.39 6.20 -51.93 -0.32 1.07 16 39 H 0.10 2.00 4.72 -51.93 -0.24 1.75 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.33 5.77 -51.93 -0.30 1.03 16 43 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 44 H 0.39 9.77 6.13 -40.82 -0.25 9.52 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.08 1.56 7.05 -51.93 -0.37 1.20 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -30.97 374.14 -10.10 -41.07 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -6.30 Total: 14.05 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -4.57 Total: -5.41 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.08 Total: -61.49 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.07 Total: -10.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.97 -10.10 -41.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998862677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.741 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds