Wall clock time and date at job start Tue Mar 31 2020 22:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30832 * 119.22560 * 2 1 4 4 C 1.33795 * 121.71445 * 179.97438 * 3 2 1 5 5 C 1.40532 * 120.81982 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.80786 * 179.97438 * 5 4 3 7 7 C 1.39338 * 121.09660 * 359.97438 * 6 5 4 8 8 C 1.36138 * 120.83938 * 0.04124 * 7 6 5 9 9 C 1.40552 * 119.61657 * 359.95529 * 8 7 6 10 10 C 1.40498 * 121.22410 * 180.28296 * 9 8 7 11 11 C 1.39042 * 117.96114 * 180.21297 * 10 9 8 12 12 C 1.47755 * 120.26753 * 179.78848 * 11 10 9 13 13 O 1.21562 * 120.00352 * 229.32518 * 12 11 10 14 14 N 1.34776 * 119.99883 * 49.32013 * 12 11 10 15 15 C 1.46500 * 120.00357 * 5.24784 * 14 12 11 16 16 C 1.46502 * 119.99823 * 185.24292 * 14 12 11 17 17 C 1.53781 * 113.69158 * 198.80185 * 16 14 12 18 18 C 1.53779 * 87.08250 * 89.12875 * 17 16 14 19 19 N 1.46497 * 113.61301 * 270.88566 * 18 17 16 20 20 C 1.36938 * 119.99816 * 256.74736 * 19 18 17 21 21 H 1.07996 * 120.00453 * 359.97438 * 20 19 18 22 22 C 1.38822 * 119.99951 * 180.02562 * 20 19 18 23 23 N 1.31615 * 119.99684 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47613 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47022 * 120.00199 * 24 22 20 27 27 H 1.48504 * 109.47050 * 239.99708 * 24 22 20 28 28 C 1.53780 * 113.61692 * 296.33790 * 16 14 12 29 29 H 1.09006 * 109.47469 * 273.53034 * 1 2 3 30 30 H 1.09001 * 109.47595 * 33.53748 * 1 2 3 31 31 H 1.09006 * 109.47234 * 153.53526 * 1 2 3 32 32 H 1.07991 * 120.09864 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.45008 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.58125 * 180.02562 * 7 6 5 35 35 H 1.08002 * 120.19289 * 179.97438 * 8 7 6 36 36 H 1.07994 * 121.01513 * 0.02562 * 10 9 8 37 37 H 1.08998 * 109.47173 * 264.63892 * 15 14 12 38 38 H 1.09001 * 109.46722 * 24.63825 * 15 14 12 39 39 H 1.08997 * 109.47414 * 144.63284 * 15 14 12 40 40 H 1.09002 * 112.84802 * 67.53387 * 16 14 12 41 41 H 1.09004 * 113.61775 * 203.68329 * 17 16 14 42 42 H 1.09000 * 113.61288 * 334.57837 * 17 16 14 43 43 H 1.08995 * 113.69077 * 139.99583 * 18 17 16 44 44 H 0.97005 * 120.00254 * 76.74979 * 19 18 17 45 45 H 0.97004 * 120.00134 * 180.02562 * 23 22 20 46 46 H 1.08997 * 113.61403 * 25.34269 * 28 16 14 47 47 H 1.09001 * 113.61172 * 156.25444 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1457 1.1418 0.0000 4 6 3.4824 1.1999 0.0005 5 6 4.1493 2.4369 0.0010 6 6 5.5102 2.4720 0.0021 7 6 6.2604 1.2978 0.0032 8 6 5.6511 0.0803 0.0024 9 6 4.2476 0.0061 0.0014 10 6 3.5838 -1.2322 0.0065 11 6 2.1934 -1.2266 0.0006 12 6 1.4434 -2.4997 0.0008 13 8 0.5471 -2.6773 -0.8009 14 7 1.7532 -3.4640 0.8899 15 6 2.7535 -3.2083 1.9293 16 6 1.0895 -4.7681 0.8170 17 6 1.1857 -5.5838 2.1171 18 6 -0.1132 -4.8880 2.5572 19 7 0.1088 -3.6284 3.2713 20 6 -0.0239 -3.5810 4.6334 21 1 -0.2927 -4.4721 5.1812 22 6 0.1860 -2.3872 5.3102 23 7 0.5120 -1.3009 4.6425 24 14 0.0042 -2.3225 7.1682 25 1 -0.3665 -3.6675 7.6765 26 1 1.2914 -1.9011 7.7771 27 1 -1.0563 -1.3472 7.5281 28 6 -0.4270 -4.7021 1.0632 29 1 -0.3634 0.0633 1.0257 30 1 -0.3634 0.8566 -0.5678 31 1 -0.3634 -0.9200 -0.4580 32 1 3.5840 3.3570 0.0015 33 1 6.0168 3.4258 0.0021 34 1 7.3390 1.3541 0.0044 35 1 6.2428 -0.8232 0.0028 36 1 4.1366 -2.1599 0.0117 37 1 3.7250 -3.5734 1.5962 38 1 2.8138 -2.1368 2.1197 39 1 2.4659 -3.7244 2.8453 40 1 1.3631 -5.3330 -0.0741 41 1 1.0766 -6.6581 1.9677 42 1 2.0486 -5.3265 2.7312 43 1 -0.8114 -5.5486 3.0711 44 1 0.3499 -2.8278 2.7794 45 1 0.6591 -0.4667 5.1154 46 1 -0.8660 -3.7329 0.8267 47 1 -0.9770 -5.5353 0.6257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998862677.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:30 Heat of formation + Delta-G solvation = 55.358406 kcal Electronic energy + Delta-G solvation = -30289.186440 eV Core-core repulsion = 26437.819189 eV Total energy + Delta-G solvation = -3851.367251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.26769 -41.23522 -39.35788 -37.95699 -35.95728 -35.18683 -34.20388 -32.94153 -31.90605 -31.08206 -28.88426 -28.26761 -26.72955 -26.08988 -25.51286 -24.19050 -23.58435 -23.07653 -21.55497 -19.65620 -19.44293 -18.97810 -18.36079 -17.65737 -17.30657 -16.88651 -16.72134 -16.54837 -15.75949 -15.70149 -15.52940 -15.32563 -15.11647 -14.79761 -14.70737 -14.33358 -14.18006 -14.04505 -13.75626 -13.57024 -13.32965 -13.13107 -13.03256 -12.78174 -12.72592 -12.68457 -12.51682 -12.40151 -12.27794 -12.09930 -11.70809 -11.64824 -11.49313 -11.22985 -10.96786 -10.81921 -10.46510 -9.70780 -9.52888 -9.23000 -8.95214 -7.91167 -5.19277 -0.73390 -0.36108 0.89365 1.45999 1.46242 1.48335 1.56918 1.81023 2.15270 2.56359 3.03803 3.11913 3.30885 3.40570 3.53403 3.61844 3.70727 3.80207 3.86477 3.96045 4.03906 4.22854 4.27006 4.30698 4.34268 4.38458 4.40275 4.52336 4.60365 4.62050 4.71026 4.80520 4.87867 4.88953 4.92798 4.96327 5.04161 5.10669 5.15270 5.18623 5.35223 5.37842 5.45274 5.45733 5.49771 5.54170 5.74186 5.89657 6.29179 6.32304 6.83923 7.06337 7.36883 8.14205 8.38486 9.30122 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.004303 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.698715 B = 6505.452452 C = 7775.379460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.191 3.809 3 N -0.504 5.504 4 C 0.118 3.882 5 C -0.126 4.126 6 C -0.078 4.078 7 C -0.118 4.118 8 C -0.087 4.087 9 C -0.131 4.131 10 C -0.006 4.006 11 C -0.195 4.195 12 C 0.568 3.432 13 O -0.559 6.559 14 N -0.575 5.575 15 C 0.078 3.922 16 C 0.126 3.874 17 C -0.158 4.158 18 C 0.142 3.858 19 N -0.717 5.717 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.066 4.066 23 N -0.958 5.958 24 Si 0.964 3.036 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.302 1.302 28 C -0.156 4.156 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.136 0.864 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.377 0.623 45 H 0.246 0.754 46 H 0.040 0.960 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.098 -0.813 -11.038 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.038 3.962 3 N -0.213 5.213 4 C -0.004 4.004 5 C -0.145 4.145 6 C -0.097 4.097 7 C -0.136 4.136 8 C -0.106 4.106 9 C -0.133 4.133 10 C -0.032 4.032 11 C -0.200 4.200 12 C 0.357 3.643 13 O -0.440 6.440 14 N -0.306 5.306 15 C -0.064 4.064 16 C 0.023 3.977 17 C -0.199 4.199 18 C 0.032 3.968 19 N -0.356 5.356 20 C -0.369 4.369 21 H 0.095 0.905 22 C -0.259 4.259 23 N -0.609 5.609 24 Si 0.795 3.205 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.230 1.230 28 C -0.195 4.195 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.154 0.846 33 H 0.182 0.818 34 H 0.185 0.815 35 H 0.180 0.820 36 H 0.190 0.810 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.210 0.790 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.196 -0.141 -11.232 17.330 hybrid contribution -0.273 0.127 1.107 1.147 sum 12.923 -0.014 -10.125 16.417 Atomic orbital electron populations 1.20969 0.88679 1.04953 1.02877 1.21432 0.97370 0.87138 0.90277 1.67788 1.09796 1.28123 1.15632 1.19504 0.88793 0.94958 0.97132 1.21012 0.95670 0.95549 1.02250 1.21407 0.92506 1.00818 0.94986 1.21399 1.02248 0.91350 0.98579 1.21405 0.90915 1.00735 0.97524 1.19028 0.96568 0.92823 1.04836 1.22230 0.91928 0.99051 0.89969 1.20678 0.95589 0.94347 1.09388 1.18124 0.82508 0.83031 0.80682 1.90666 1.31562 1.80485 1.41280 1.47444 1.40676 1.12890 1.29542 1.22023 0.90940 1.01742 0.91706 1.21954 0.93169 0.83125 0.99421 1.24050 1.00829 1.00124 0.94881 1.21493 0.95695 0.88312 0.91291 1.42430 1.82250 1.07267 1.03689 1.19640 1.37875 0.94997 0.84432 0.90549 1.25400 1.03447 0.95633 1.01411 1.69834 1.55809 0.99935 1.35280 0.85206 0.76434 0.77422 0.81465 1.19053 1.22237 1.23004 1.23698 0.96369 1.02044 0.97374 0.91604 0.89274 0.89219 0.84569 0.81776 0.81472 0.82007 0.81040 0.89817 0.93030 0.90000 0.88582 0.86263 0.90905 0.92025 0.78977 0.94557 0.94067 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 9.82 71.23 0.70 -3.87 16 2 C 0.19 7.47 6.82 43.27 0.29 7.76 16 3 N -0.50 -19.11 10.20 -175.86 -1.79 -20.91 16 4 C 0.12 3.78 6.61 40.28 0.27 4.05 16 5 C -0.13 -3.17 9.97 22.34 0.22 -2.94 16 6 C -0.08 -1.32 9.94 22.05 0.22 -1.10 16 7 C -0.12 -1.76 9.96 22.05 0.22 -1.54 16 8 C -0.09 -1.62 9.77 22.35 0.22 -1.40 16 9 C -0.13 -3.60 5.74 -21.28 -0.12 -3.72 16 10 C -0.01 -0.17 7.80 23.01 0.18 0.01 16 11 C -0.19 -7.02 4.67 -20.00 -0.09 -7.11 16 12 C 0.57 21.40 6.43 86.76 0.56 21.96 16 13 O -0.56 -23.38 13.51 -3.91 -0.05 -23.43 16 14 N -0.57 -19.61 2.10 -823.16 -1.73 -21.34 16 15 C 0.08 2.57 7.51 127.77 0.96 3.53 16 16 C 0.13 3.91 4.17 45.52 0.19 4.10 16 17 C -0.16 -4.65 7.16 31.12 0.22 -4.43 16 18 C 0.14 5.40 4.55 45.52 0.21 5.61 16 19 N -0.72 -34.74 3.86 -320.45 -1.24 -35.98 16 20 C -0.24 -12.66 9.98 84.04 0.84 -11.82 16 21 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 22 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 23 N -0.96 -57.18 13.06 21.65 0.28 -56.90 16 24 Si 0.96 45.48 29.55 68.60 2.03 47.51 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 27 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 28 C -0.16 -5.37 7.10 31.12 0.22 -5.15 16 29 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.09 3.05 8.14 -2.39 -0.02 3.04 16 31 H 0.09 3.62 5.31 -2.38 -0.01 3.61 16 32 H 0.14 3.21 8.06 -2.92 -0.02 3.19 16 33 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.17 3.67 7.06 -2.91 -0.02 3.64 16 37 H 0.08 2.00 7.61 -2.39 -0.02 1.98 16 38 H 0.05 1.95 6.20 -2.39 -0.01 1.93 16 39 H 0.08 3.10 4.72 -2.39 -0.01 3.09 16 40 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.07 2.29 5.77 -2.39 -0.01 2.28 16 43 H 0.06 2.31 8.12 -2.39 -0.02 2.29 16 44 H 0.38 19.87 6.13 -92.70 -0.57 19.30 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.04 1.73 7.05 -2.39 -0.02 1.72 16 47 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -72.73 374.14 3.70 -69.03 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: 0.44 Total: 41.29 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 5.77 Total: 0.74 kcal Atomic # 7 Polarization: -130.64 SS G_CDS: -4.48 Total: -135.12 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.43 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -72.73 3.70 -69.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998862677.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.384 kcal (2) G-P(sol) polarization free energy of solvation -72.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds