Wall clock time and date at job start Tue Mar 31 2020 22:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36541 * 120.87917 * 2 1 4 4 C 1.40236 * 119.82393 * 180.02562 * 3 2 1 5 5 C 1.48270 * 119.24436 * 179.97438 * 4 3 2 6 6 O 1.21500 * 120.00145 * 352.75483 * 5 4 3 7 7 N 1.34779 * 120.00214 * 172.75235 * 5 4 3 8 8 C 1.46496 * 119.99799 * 2.00036 * 7 5 4 9 9 C 1.46502 * 119.99977 * 181.99808 * 7 5 4 10 10 C 1.53779 * 113.61566 * 219.13420 * 9 7 5 11 11 C 1.53958 * 87.02183 * 220.05184 * 10 9 7 12 12 N 1.46495 * 113.74259 * 139.94529 * 11 10 9 13 13 C 1.36936 * 120.00156 * 107.39991 * 12 11 10 14 14 H 1.08003 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.38806 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.31623 * 120.00253 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00025 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47345 * 120.00141 * 17 15 13 20 20 H 1.48507 * 109.47009 * 240.00136 * 17 15 13 21 21 C 1.53779 * 87.10713 * 25.36554 * 11 10 9 22 22 N 1.31912 * 121.51824 * 359.92696 * 4 3 2 23 23 C 1.33244 * 121.29404 * 0.02562 * 22 4 3 24 24 C 1.40836 * 120.98091 * 180.02562 * 23 22 4 25 25 C 1.35992 * 119.73216 * 179.97438 * 24 23 22 26 26 C 1.39444 * 121.08904 * 0.02562 * 25 24 23 27 27 C 1.36125 * 120.92218 * 0.02562 * 26 25 24 28 28 C 1.40429 * 119.64940 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46729 * 270.05152 * 1 2 3 30 30 H 1.08997 * 109.47105 * 30.05723 * 1 2 3 31 31 H 1.09000 * 109.46807 * 150.05926 * 1 2 3 32 32 H 1.08001 * 120.08912 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47309 * 83.75097 * 8 7 5 34 34 H 1.09004 * 109.46823 * 203.75040 * 8 7 5 35 35 H 1.08999 * 109.47646 * 323.75346 * 8 7 5 36 36 H 1.08996 * 112.84965 * 350.33729 * 9 7 5 37 37 H 1.09002 * 113.61699 * 334.57436 * 10 9 7 38 38 H 1.08998 * 113.60939 * 105.47324 * 10 9 7 39 39 H 1.09001 * 113.53701 * 270.81434 * 11 10 9 40 40 H 0.96998 * 119.99825 * 287.40459 * 12 11 10 41 41 H 0.96995 * 120.00066 * 179.97438 * 16 15 13 42 42 H 1.09007 * 113.61413 * 220.08989 * 21 11 10 43 43 H 1.09000 * 113.61850 * 89.18951 * 21 11 10 44 44 H 1.07999 * 120.13494 * 359.96907 * 24 23 22 45 45 H 1.08003 * 119.45474 * 180.27220 * 25 24 23 46 46 H 1.07999 * 119.53670 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.17934 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1460 -0.0005 5 6 4.3579 2.4262 -0.0011 6 8 3.7632 3.4773 -0.1338 7 7 5.6977 2.4239 0.1456 8 6 6.4197 1.1545 0.2617 9 6 6.4320 3.6909 0.1890 10 6 7.7757 3.6501 -0.5577 11 6 8.3525 4.4860 0.5993 12 7 9.7022 4.0833 1.0023 13 6 10.7745 4.8768 0.6931 14 1 10.6251 5.7999 0.1526 15 6 12.0532 4.4955 1.0754 16 7 12.2352 3.3709 1.7346 17 14 13.5159 5.5784 0.6543 18 1 13.0471 6.7778 -0.0853 19 1 14.1949 6.0017 1.9052 20 1 14.4685 4.8163 -0.1926 21 6 7.2427 3.8891 1.4806 22 7 4.2787 0.0090 0.0004 23 6 3.6481 -1.1648 0.0013 24 6 4.3688 -2.3748 0.0029 25 6 3.6993 -3.5585 0.0044 26 6 2.3054 -3.5974 0.0039 27 6 1.5736 -2.4496 0.0014 28 6 2.2292 -1.2077 -0.0002 29 1 -0.3633 0.0009 1.0277 30 1 -0.3633 0.8894 -0.5147 31 1 -0.3633 -0.8905 -0.5129 32 1 1.6836 2.1162 -0.0004 33 1 6.6133 0.7543 -0.7335 34 1 7.3658 1.3205 0.7770 35 1 5.8172 0.4443 0.8279 36 1 5.8124 4.5484 -0.0736 37 1 8.2046 2.6506 -0.6305 38 1 7.7608 4.1759 -1.5124 39 1 8.2591 5.5614 0.4482 40 1 9.8363 3.2544 1.4880 41 1 13.1289 3.1043 2.0013 42 1 6.7980 4.6076 2.1693 43 1 7.5255 2.9551 1.9663 44 1 5.4487 -2.3627 0.0027 45 1 4.2564 -4.4838 0.0100 46 1 1.7994 -4.5515 0.0055 47 1 0.4945 -2.4937 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999003294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:14 Heat of formation + Delta-G solvation = 54.856084 kcal Electronic energy + Delta-G solvation = -28454.114093 eV Core-core repulsion = 24602.725060 eV Total energy + Delta-G solvation = -3851.389033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.29970 -41.12236 -39.47289 -37.86612 -36.46879 -35.72827 -34.72012 -32.11257 -31.60309 -31.28288 -28.87297 -27.97569 -26.98618 -26.53096 -25.75467 -24.57639 -23.68568 -22.28947 -21.03860 -20.28576 -19.12594 -19.03581 -18.84356 -17.83017 -17.65785 -16.83832 -16.62601 -16.32106 -15.99981 -15.73591 -15.45802 -15.32209 -15.06887 -14.94830 -14.43208 -14.36971 -14.15499 -14.04576 -13.93136 -13.52364 -13.34488 -13.24173 -13.14231 -12.99799 -12.83940 -12.68831 -12.35365 -12.33998 -12.22627 -12.12162 -12.00571 -11.73356 -11.49106 -11.28529 -11.18621 -10.89660 -10.25285 -9.90816 -9.60307 -9.20579 -9.00430 -7.95121 -5.23789 -0.87251 -0.36364 0.90090 1.31163 1.48238 1.48403 1.58715 1.81751 2.15867 2.56603 2.86817 3.04242 3.36217 3.44282 3.51944 3.69490 3.73834 3.77124 3.81883 3.91620 4.09315 4.17673 4.21292 4.25203 4.31673 4.37809 4.47927 4.50336 4.61210 4.72241 4.74988 4.76145 4.83482 4.85548 4.97629 4.98230 5.01512 5.08957 5.10447 5.13202 5.22555 5.40535 5.42145 5.47130 5.50968 5.54683 5.60572 5.87315 6.25756 6.27535 6.56533 6.96258 7.33254 8.07452 8.31937 9.28283 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019676 B = 0.002262 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.691436 B =12377.694261 C =13584.218294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.148 4.148 4 C 0.100 3.900 5 C 0.558 3.442 6 O -0.568 6.568 7 N -0.576 5.576 8 C 0.082 3.918 9 C 0.125 3.875 10 C -0.161 4.161 11 C 0.157 3.843 12 N -0.722 5.722 13 C -0.243 4.243 14 H 0.078 0.922 15 C -0.076 4.076 16 N -0.969 5.969 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.294 1.294 20 H -0.294 1.294 21 C -0.149 4.149 22 N -0.451 5.451 23 C 0.096 3.904 24 C -0.109 4.109 25 C -0.093 4.093 26 C -0.103 4.103 27 C -0.104 4.104 28 C -0.100 4.100 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.148 0.852 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.139 0.861 45 H 0.159 0.841 46 H 0.164 0.836 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.994 -17.014 -3.849 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.169 4.169 4 C -0.051 4.051 5 C 0.346 3.654 6 O -0.447 6.447 7 N -0.305 5.305 8 C -0.060 4.060 9 C 0.022 3.978 10 C -0.203 4.203 11 C 0.046 3.954 12 N -0.360 5.360 13 C -0.375 4.375 14 H 0.096 0.904 15 C -0.268 4.268 16 N -0.619 5.619 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.221 1.221 20 H -0.221 1.221 21 C -0.189 4.189 22 N -0.164 5.164 23 C -0.027 4.027 24 C -0.127 4.127 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.102 4.102 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.165 0.835 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.157 0.843 45 H 0.177 0.823 46 H 0.181 0.819 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -27.227 -16.352 -3.984 32.009 hybrid contribution 0.747 0.481 0.047 0.890 sum -26.480 -15.871 -3.937 31.122 Atomic orbital electron populations 1.21002 0.86586 1.05160 1.04577 1.20543 0.98765 0.90672 0.92863 1.21619 0.92766 1.00650 1.01884 1.21137 0.92407 0.91544 1.00017 1.18376 0.82211 0.87937 0.76859 1.90714 1.68923 1.32760 1.52342 1.47822 1.05759 1.08409 1.68470 1.22359 0.97004 0.84017 1.02604 1.22466 0.91273 0.86531 0.97569 1.24135 0.94589 1.01892 0.99687 1.21634 0.83303 0.96996 0.93465 1.42500 1.01571 1.25187 1.66692 1.19740 0.86922 1.02281 1.28513 0.90406 1.25564 1.00275 0.99176 1.01785 1.69818 1.21499 1.24873 1.45758 0.85083 0.79492 0.78270 0.76970 1.19043 1.22103 1.22121 1.23767 0.96637 1.01520 0.96941 1.68316 1.38646 0.97811 1.11643 1.19433 0.91138 0.92376 0.99785 1.21080 1.01039 0.90172 1.00441 1.21366 0.95267 0.98284 0.96336 1.21471 0.93890 0.99868 0.96833 1.21395 1.01773 0.90086 0.98926 1.19145 0.93529 0.95724 1.01814 0.88555 0.89785 0.88483 0.83462 0.92459 0.92137 0.87167 0.86692 0.90521 0.91536 0.89928 0.79311 0.94012 0.90727 0.90332 0.84284 0.82344 0.81877 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.59 71.24 0.68 -0.29 16 2 C -0.02 -0.35 5.92 -19.65 -0.12 -0.47 16 3 C -0.15 -3.44 9.22 22.36 0.21 -3.23 16 4 C 0.10 2.83 6.63 42.29 0.28 3.11 16 5 C 0.56 18.41 7.66 86.91 0.67 19.07 16 6 O -0.57 -21.09 15.77 -3.72 -0.06 -21.15 16 7 N -0.58 -18.46 3.08 -822.58 -2.54 -21.00 16 8 C 0.08 2.39 8.00 127.77 1.02 3.41 16 9 C 0.13 4.18 4.22 45.52 0.19 4.37 16 10 C -0.16 -5.83 7.31 31.18 0.23 -5.60 16 11 C 0.16 6.33 4.48 45.58 0.20 6.53 16 12 N -0.72 -36.69 5.41 -320.18 -1.73 -38.42 16 13 C -0.24 -13.54 9.97 84.03 0.84 -12.70 16 14 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 15 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 16 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 17 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 21 C -0.15 -5.21 7.34 31.12 0.23 -4.98 16 22 N -0.45 -11.90 5.95 -177.77 -1.06 -12.96 16 23 C 0.10 2.11 6.61 40.49 0.27 2.38 16 24 C -0.11 -1.86 9.99 22.38 0.22 -1.64 16 25 C -0.09 -1.00 9.94 22.04 0.22 -0.78 16 26 C -0.10 -0.85 9.95 22.07 0.22 -0.63 16 27 C -0.10 -1.08 9.31 22.31 0.21 -0.88 16 28 C -0.10 -1.77 5.75 -21.22 -0.12 -1.90 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.08 0.64 8.10 -2.39 -0.02 0.62 16 31 H 0.10 0.39 6.51 -2.39 -0.02 0.38 16 32 H 0.15 3.29 7.62 -2.91 -0.02 3.27 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.84 6.10 -2.38 -0.01 1.83 16 35 H 0.11 3.06 5.27 -3.02 -0.02 3.05 16 36 H 0.12 3.89 7.20 -2.39 -0.02 3.87 16 37 H 0.08 2.91 6.67 -2.39 -0.02 2.89 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.08 3.28 8.10 -2.39 -0.02 3.26 16 40 H 0.37 20.34 7.92 -92.71 -0.73 19.60 16 41 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.08 2.84 6.88 -2.39 -0.02 2.82 16 44 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 47 H 0.16 0.66 6.43 -2.91 -0.02 0.64 16 Total: -1.00 -72.66 381.23 3.11 -69.55 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.27 Total: 32.75 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.91 Total: 1.88 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -5.04 Total: -131.50 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -72.66 3.11 -69.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999003294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.407 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds