Wall clock time and date at job start Tue Mar 31 2020 22:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39429 * 119.54395 * 2 1 4 4 C 1.35998 * 121.08173 * 180.02562 * 3 2 1 5 5 C 1.40826 * 119.73876 * 359.97438 * 4 3 2 6 6 N 1.33269 * 120.98138 * 180.25311 * 5 4 3 7 7 C 1.31874 * 121.29756 * 180.26408 * 6 5 4 8 8 C 1.48278 * 119.23731 * 179.75919 * 7 6 5 9 9 O 1.21501 * 119.99766 * 172.90238 * 8 7 6 10 10 N 1.34774 * 120.00278 * 352.61765 * 8 7 6 11 11 C 1.46495 * 119.99839 * 354.64866 * 10 8 7 12 12 C 1.46498 * 119.99884 * 174.64637 * 10 8 7 13 13 C 1.53787 * 113.61156 * 219.14070 * 12 10 8 14 14 C 1.53956 * 87.01660 * 220.04928 * 13 12 10 15 15 N 1.46500 * 113.74436 * 139.94759 * 14 13 12 16 16 C 1.36932 * 120.00378 * 107.39781 * 15 14 13 17 17 H 1.08001 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.38819 * 120.00092 * 179.97438 * 16 15 14 19 19 N 1.31613 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46987 * 60.00651 * 20 18 16 22 22 H 1.48498 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47149 * 300.00359 * 20 18 16 24 24 C 1.53776 * 113.61472 * 121.53222 * 12 10 8 25 25 C 1.40279 * 121.51833 * 359.47326 * 7 6 5 26 26 C 1.36502 * 119.81897 * 0.25813 * 25 7 6 27 27 C 1.40762 * 118.24537 * 0.02562 * 26 25 7 28 28 C 1.36139 * 119.53840 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47210 * 89.99521 * 1 2 3 30 30 H 1.09000 * 109.47176 * 209.99526 * 1 2 3 31 31 H 1.09000 * 109.46536 * 329.99822 * 1 2 3 32 32 H 1.08001 * 119.46088 * 0.02671 * 3 2 1 33 33 H 1.08005 * 120.13057 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47331 * 85.08744 * 11 10 8 35 35 H 1.09003 * 109.47321 * 205.08491 * 11 10 8 36 36 H 1.08999 * 109.47681 * 325.08532 * 11 10 8 37 37 H 1.08998 * 112.85148 * 350.33123 * 12 10 8 38 38 H 1.08999 * 113.61565 * 334.56182 * 13 12 10 39 39 H 1.08997 * 113.61370 * 105.47130 * 13 12 10 40 40 H 1.09009 * 113.53606 * 270.80833 * 14 13 12 41 41 H 0.97002 * 119.99832 * 287.40036 * 15 14 13 42 42 H 0.96998 * 119.99779 * 179.97438 * 19 18 16 43 43 H 1.08998 * 113.61681 * 254.52834 * 24 12 10 44 44 H 1.09004 * 113.61375 * 25.43414 * 24 12 10 45 45 H 1.07993 * 120.08919 * 180.23728 * 25 7 6 46 46 H 1.07996 * 120.88060 * 179.97438 * 26 25 7 47 47 H 1.08002 * 120.17538 * 359.94594 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5541 1.2495 -0.0005 5 6 4.2852 0.0459 -0.0005 6 7 5.6179 0.0528 0.0040 7 6 6.3087 -1.0705 -0.0011 8 6 7.7903 -1.0095 -0.0012 9 8 8.4402 -2.0284 0.1241 10 7 8.4160 0.1753 -0.1460 11 6 7.6379 1.3858 -0.4204 12 6 9.8742 0.2527 -0.0289 13 6 10.3672 1.5093 0.7080 14 6 11.4984 1.5785 -0.3341 15 7 11.8040 2.9390 -0.7835 16 6 12.9590 3.5514 -0.3760 17 1 13.6449 3.0314 0.2764 18 6 13.2488 4.8403 -0.8022 19 7 12.4133 5.4739 -1.5976 20 14 14.8241 5.6760 -0.2457 21 1 15.9931 4.8782 -0.6952 22 1 14.8971 7.0371 -0.8349 23 1 14.8340 5.7773 1.2358 24 6 10.5643 0.8110 -1.2846 25 6 5.6743 -2.3217 -0.0006 26 6 4.3111 -2.3915 0.0000 27 6 3.5824 -1.1871 -0.0005 28 6 2.1782 -1.1844 -0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6384 2.1388 0.0004 33 1 4.0710 2.1978 -0.0009 34 1 7.2810 1.8090 0.5186 35 1 8.2675 2.1144 -0.9312 36 1 6.7863 1.1349 -1.0528 37 1 10.3190 -0.6719 0.3392 38 1 9.6726 2.3475 0.6545 39 1 10.7172 1.3122 1.7212 40 1 12.3881 1.0171 -0.0487 41 1 11.1882 3.4060 -1.3697 42 1 12.6157 6.3747 -1.8951 43 1 11.0732 0.0511 -1.8776 44 1 9.9236 1.4580 -1.8837 45 1 6.2629 -3.2271 -0.0011 46 1 3.8049 -3.3455 -0.0001 47 1 1.6336 -2.1171 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999089954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:41 Heat of formation + Delta-G solvation = 69.772359 kcal Electronic energy + Delta-G solvation = -28212.493087 eV Core-core repulsion = 24361.750872 eV Total energy + Delta-G solvation = -3850.742215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39051 -39.94942 -38.25495 -37.33225 -34.90801 -33.84947 -33.09330 -32.28073 -30.60361 -29.94765 -27.88830 -26.82697 -25.14024 -24.94943 -24.36358 -23.59992 -22.50321 -22.04182 -19.94876 -18.79035 -18.31225 -17.54295 -17.14353 -17.05389 -16.27974 -15.71151 -15.63613 -14.78974 -14.74493 -14.61730 -14.47470 -14.37866 -13.98312 -13.75080 -13.61141 -13.44623 -13.03886 -12.86014 -12.80272 -12.69148 -12.22055 -12.03658 -11.88833 -11.74092 -11.67642 -11.48799 -11.21807 -10.91482 -10.85032 -10.58208 -10.48336 -10.28103 -10.15061 -9.93125 -9.63304 -9.35528 -9.06014 -8.87579 -8.55563 -8.35219 -6.97061 -5.78423 -3.07123 -0.11522 0.35563 1.59754 2.17599 2.99940 3.04394 3.44299 3.48695 3.49613 3.75321 3.83623 4.17278 4.32298 4.34787 4.49543 4.59710 4.62509 4.73012 4.89142 5.05993 5.09760 5.14018 5.16898 5.21055 5.38708 5.40370 5.43484 5.48368 5.49577 5.59863 5.65294 5.72981 5.86768 5.90567 5.92205 5.99992 6.06235 6.11758 6.18628 6.22670 6.34185 6.39044 6.42319 6.53884 6.60205 6.83453 7.06113 7.38804 7.55170 7.69867 8.16342 8.40042 9.51273 10.08300 10.43104 11.43879 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.002176 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.537414 B =12866.437197 C =14134.876438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.075 4.075 3 C -0.104 4.104 4 C -0.078 4.078 5 C 0.113 3.887 6 N -0.430 5.430 7 C 0.117 3.883 8 C 0.561 3.439 9 O -0.539 6.539 10 N -0.574 5.574 11 C 0.086 3.914 12 C 0.113 3.887 13 C -0.173 4.173 14 C 0.170 3.830 15 N -0.709 5.709 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.161 4.161 25 C -0.122 4.122 26 C -0.067 4.067 27 C -0.083 4.083 28 C -0.107 4.107 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.244 -14.130 2.808 29.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.075 4.075 3 C -0.124 4.124 4 C -0.097 4.097 5 C -0.010 4.010 6 N -0.142 5.142 7 C -0.036 4.036 8 C 0.347 3.653 9 O -0.417 6.417 10 N -0.303 5.303 11 C -0.056 4.056 12 C 0.010 3.990 13 C -0.215 4.215 14 C 0.057 3.943 15 N -0.347 5.347 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.201 4.201 25 C -0.142 4.142 26 C -0.093 4.093 27 C -0.085 4.085 28 C -0.125 4.125 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.168 0.832 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.305 -13.687 2.930 28.919 hybrid contribution 0.100 -0.021 0.119 0.157 sum -25.205 -13.708 3.049 28.853 Atomic orbital electron populations 1.20870 0.90687 1.03170 1.02704 1.19774 0.96584 0.93002 0.98134 1.20847 0.94011 0.97899 0.99633 1.20914 0.93569 0.97015 0.98203 1.19001 0.89302 0.92963 0.99689 1.68464 1.06827 1.29034 1.09845 1.21433 0.94598 0.89545 0.98031 1.17981 0.85608 0.83890 0.77787 1.90756 1.65903 1.33824 1.51178 1.47783 1.07658 1.07741 1.67111 1.22105 0.95459 0.86275 1.01790 1.22716 0.77427 0.99877 0.98959 1.24364 1.01152 0.95964 1.00050 1.21373 0.93443 0.87497 0.91991 1.42342 1.24078 1.11022 1.57234 1.19272 0.97549 0.96715 1.23984 0.91043 1.24766 0.98720 0.97313 1.00096 1.69646 1.36924 1.13277 1.38221 0.86251 0.83124 0.78626 0.78085 1.21219 1.21716 1.21231 1.23920 0.99209 0.99960 0.97057 1.21740 0.95069 0.98872 0.98532 1.21433 0.93672 0.97784 0.96405 1.18954 0.94795 0.94033 1.00695 1.20834 0.92136 0.98318 1.01245 0.90751 0.91299 0.91143 0.85042 0.84132 0.92196 0.91173 0.89552 0.86790 0.89731 0.92099 0.90242 0.78086 0.93418 0.91655 0.89962 0.83242 0.83794 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.98 36.01 0.36 -0.12 16 2 C -0.07 -0.50 5.85 -104.93 -0.61 -1.12 16 3 C -0.10 -0.75 9.58 -39.94 -0.38 -1.13 16 4 C -0.08 -0.71 9.99 -39.41 -0.39 -1.11 16 5 C 0.11 1.26 6.61 -84.85 -0.56 0.70 16 6 N -0.43 -5.45 6.10 -7.54 -0.05 -5.50 16 7 C 0.12 1.57 6.56 -82.95 -0.54 1.02 16 8 C 0.56 8.82 7.65 -12.13 -0.09 8.73 16 9 O -0.54 -9.61 15.81 5.37 0.08 -9.53 16 10 N -0.57 -8.84 3.08 -173.96 -0.54 -9.38 16 11 C 0.09 1.19 7.80 59.84 0.47 1.66 16 12 C 0.11 1.85 4.19 -67.12 -0.28 1.57 16 13 C -0.17 -3.06 7.32 -25.82 -0.19 -3.25 16 14 C 0.17 3.38 4.48 -67.03 -0.30 3.08 16 15 N -0.71 -17.63 5.41 -52.54 -0.28 -17.92 16 16 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 19 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 20 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C -0.16 -2.79 7.35 -25.92 -0.19 -2.98 16 25 C -0.12 -1.33 9.54 -39.44 -0.38 -1.71 16 26 C -0.07 -0.59 9.88 -39.25 -0.39 -0.97 16 27 C -0.08 -0.79 5.75 -106.71 -0.61 -1.41 16 28 C -0.11 -0.78 9.37 -39.52 -0.37 -1.15 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 35 H 0.07 1.01 6.14 -51.93 -0.32 0.69 16 36 H 0.09 1.13 5.76 -51.93 -0.30 0.83 16 37 H 0.11 1.90 7.25 -51.93 -0.38 1.52 16 38 H 0.08 1.55 6.70 -51.93 -0.35 1.20 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.57 8.10 -51.92 -0.42 1.15 16 41 H 0.39 10.11 7.92 -40.82 -0.32 9.79 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.08 1.44 6.86 -51.93 -0.36 1.09 16 45 H 0.15 1.52 7.62 -52.49 -0.40 1.12 16 46 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -32.59 385.01 -10.60 -43.18 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.60 Total: 8.78 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.72 Total: -5.54 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.14 Total: -60.01 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.59 -10.60 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999089954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.957 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds