Wall clock time and date at job start Tue Mar 31 2020 22:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39429 * 119.54395 * 2 1 4 4 C 1.35998 * 121.08173 * 180.02562 * 3 2 1 5 5 C 1.40826 * 119.73876 * 359.97438 * 4 3 2 6 6 N 1.33269 * 120.98138 * 180.25311 * 5 4 3 7 7 C 1.31874 * 121.29756 * 180.26408 * 6 5 4 8 8 C 1.48278 * 119.23731 * 179.75919 * 7 6 5 9 9 O 1.21501 * 119.99766 * 172.90238 * 8 7 6 10 10 N 1.34774 * 120.00278 * 352.61765 * 8 7 6 11 11 C 1.46495 * 119.99839 * 354.64866 * 10 8 7 12 12 C 1.46498 * 119.99884 * 174.64637 * 10 8 7 13 13 C 1.53787 * 113.61156 * 219.14070 * 12 10 8 14 14 C 1.53956 * 87.01660 * 220.04928 * 13 12 10 15 15 N 1.46500 * 113.74436 * 139.94759 * 14 13 12 16 16 C 1.36932 * 120.00378 * 107.39781 * 15 14 13 17 17 H 1.08001 * 120.00284 * 0.02562 * 16 15 14 18 18 C 1.38819 * 120.00092 * 179.97438 * 16 15 14 19 19 N 1.31613 * 119.99891 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99920 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46987 * 60.00651 * 20 18 16 22 22 H 1.48498 * 109.47070 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47149 * 300.00359 * 20 18 16 24 24 C 1.53776 * 113.61472 * 121.53222 * 12 10 8 25 25 C 1.40279 * 121.51833 * 359.47326 * 7 6 5 26 26 C 1.36502 * 119.81897 * 0.25813 * 25 7 6 27 27 C 1.40762 * 118.24537 * 0.02562 * 26 25 7 28 28 C 1.36139 * 119.53840 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47210 * 89.99521 * 1 2 3 30 30 H 1.09000 * 109.47176 * 209.99526 * 1 2 3 31 31 H 1.09000 * 109.46536 * 329.99822 * 1 2 3 32 32 H 1.08001 * 119.46088 * 0.02671 * 3 2 1 33 33 H 1.08005 * 120.13057 * 179.97438 * 4 3 2 34 34 H 1.09005 * 109.47331 * 85.08744 * 11 10 8 35 35 H 1.09003 * 109.47321 * 205.08491 * 11 10 8 36 36 H 1.08999 * 109.47681 * 325.08532 * 11 10 8 37 37 H 1.08998 * 112.85148 * 350.33123 * 12 10 8 38 38 H 1.08999 * 113.61565 * 334.56182 * 13 12 10 39 39 H 1.08997 * 113.61370 * 105.47130 * 13 12 10 40 40 H 1.09009 * 113.53606 * 270.80833 * 14 13 12 41 41 H 0.97002 * 119.99832 * 287.40036 * 15 14 13 42 42 H 0.96998 * 119.99779 * 179.97438 * 19 18 16 43 43 H 1.08998 * 113.61681 * 254.52834 * 24 12 10 44 44 H 1.09004 * 113.61375 * 25.43414 * 24 12 10 45 45 H 1.07993 * 120.08919 * 180.23728 * 25 7 6 46 46 H 1.07996 * 120.88060 * 179.97438 * 26 25 7 47 47 H 1.08002 * 120.17538 * 359.94594 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2130 0.0000 4 6 3.5541 1.2495 -0.0005 5 6 4.2852 0.0459 -0.0005 6 7 5.6179 0.0528 0.0040 7 6 6.3087 -1.0705 -0.0011 8 6 7.7903 -1.0095 -0.0012 9 8 8.4402 -2.0284 0.1241 10 7 8.4160 0.1753 -0.1460 11 6 7.6379 1.3858 -0.4204 12 6 9.8742 0.2527 -0.0289 13 6 10.3672 1.5093 0.7080 14 6 11.4984 1.5785 -0.3341 15 7 11.8040 2.9390 -0.7835 16 6 12.9590 3.5514 -0.3760 17 1 13.6449 3.0314 0.2764 18 6 13.2488 4.8403 -0.8022 19 7 12.4133 5.4739 -1.5976 20 14 14.8241 5.6760 -0.2457 21 1 15.9931 4.8782 -0.6952 22 1 14.8971 7.0371 -0.8349 23 1 14.8340 5.7773 1.2358 24 6 10.5643 0.8110 -1.2846 25 6 5.6743 -2.3217 -0.0006 26 6 4.3111 -2.3915 0.0000 27 6 3.5824 -1.1871 -0.0005 28 6 2.1782 -1.1844 -0.0005 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 1.6384 2.1388 0.0004 33 1 4.0710 2.1978 -0.0009 34 1 7.2810 1.8090 0.5186 35 1 8.2675 2.1144 -0.9312 36 1 6.7863 1.1349 -1.0528 37 1 10.3190 -0.6719 0.3392 38 1 9.6726 2.3475 0.6545 39 1 10.7172 1.3122 1.7212 40 1 12.3881 1.0171 -0.0487 41 1 11.1882 3.4060 -1.3697 42 1 12.6157 6.3747 -1.8951 43 1 11.0732 0.0511 -1.8776 44 1 9.9236 1.4580 -1.8837 45 1 6.2629 -3.2271 -0.0011 46 1 3.8049 -3.3455 -0.0001 47 1 1.6336 -2.1171 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999089954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:41 Heat of formation + Delta-G solvation = 51.586122 kcal Electronic energy + Delta-G solvation = -28213.281702 eV Core-core repulsion = 24361.750872 eV Total energy + Delta-G solvation = -3851.530829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22645 -41.11015 -39.51019 -38.20133 -36.31901 -35.05962 -34.42012 -33.03485 -31.87189 -31.27945 -28.57575 -28.05480 -26.65690 -26.34137 -25.37060 -24.75617 -23.42455 -23.00658 -21.18946 -20.28270 -19.09155 -19.01771 -18.60066 -17.93055 -17.51298 -16.78447 -16.63692 -16.34668 -16.01945 -15.51180 -15.38733 -15.34438 -15.04009 -14.91945 -14.57425 -14.27937 -14.18964 -14.05529 -14.05024 -13.51306 -13.37491 -13.24361 -13.13571 -12.96048 -12.75387 -12.44569 -12.32415 -12.28808 -12.21378 -12.11959 -12.01137 -11.72865 -11.59531 -11.49114 -11.28373 -10.87052 -10.33115 -9.83454 -9.59174 -9.18589 -8.99729 -7.94205 -5.22824 -0.86688 -0.35966 0.89572 1.32674 1.48363 1.51150 1.57041 1.83247 2.12593 2.57353 2.86521 3.04227 3.36753 3.48718 3.59318 3.71395 3.77166 3.77903 3.83092 3.92084 3.99564 4.16620 4.17615 4.26128 4.32932 4.36427 4.41641 4.66357 4.67343 4.74449 4.78255 4.83688 4.85938 4.89358 4.90523 4.98308 5.02287 5.07333 5.10786 5.13954 5.23474 5.32041 5.41399 5.47331 5.51263 5.57096 5.61018 5.86143 6.26464 6.28191 6.56979 6.97115 7.33860 8.08426 8.32889 9.28707 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018718 B = 0.002176 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.537414 B =12866.437197 C =14134.876438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.073 4.073 3 C -0.095 4.095 4 C -0.100 4.100 5 C 0.089 3.911 6 N -0.444 5.444 7 C 0.091 3.909 8 C 0.559 3.441 9 O -0.567 6.567 10 N -0.578 5.578 11 C 0.096 3.904 12 C 0.127 3.873 13 C -0.161 4.161 14 C 0.156 3.844 15 N -0.722 5.722 16 C -0.246 4.246 17 H 0.078 0.922 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.278 1.278 24 C -0.149 4.149 25 C -0.137 4.137 26 C -0.051 4.051 27 C -0.092 4.092 28 C -0.108 4.108 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.151 0.849 46 H 0.183 0.817 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.915 -15.311 3.407 32.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.115 4.115 4 C -0.119 4.119 5 C -0.034 4.034 6 N -0.157 5.157 7 C -0.061 4.061 8 C 0.347 3.653 9 O -0.446 6.446 10 N -0.307 5.307 11 C -0.046 4.046 12 C 0.024 3.976 13 C -0.203 4.203 14 C 0.045 3.955 15 N -0.359 5.359 16 C -0.378 4.378 17 H 0.096 0.904 18 C -0.268 4.268 19 N -0.619 5.619 20 Si 0.802 3.198 21 H -0.204 1.204 22 H -0.222 1.222 23 H -0.205 1.205 24 C -0.189 4.189 25 C -0.158 4.158 26 C -0.076 4.076 27 C -0.095 4.095 28 C -0.126 4.126 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.207 0.793 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.169 0.831 46 H 0.200 0.800 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.987 -14.913 3.553 31.911 hybrid contribution 0.694 0.307 -0.047 0.760 sum -27.293 -14.606 3.507 31.153 Atomic orbital electron populations 1.20941 0.88392 1.04332 1.03630 1.20185 0.98235 0.92532 0.96351 1.21211 0.93336 0.99428 0.97513 1.21054 0.94541 0.96560 0.99720 1.19356 0.88881 0.94547 1.00665 1.68294 1.08004 1.29060 1.10309 1.21161 0.93168 0.90915 1.00839 1.18396 0.86873 0.83268 0.76771 1.90719 1.66893 1.34575 1.52430 1.47807 1.07214 1.08371 1.67300 1.22066 0.95220 0.85453 1.01869 1.22446 0.78399 0.99082 0.97714 1.24136 0.99898 0.96444 0.99782 1.21643 0.94507 0.85616 0.93694 1.42481 1.23339 1.12677 1.57426 1.19673 0.98156 0.96878 1.23051 0.90434 1.25570 1.01976 0.98251 1.00974 1.69803 1.38779 1.13318 1.39969 0.85215 0.79623 0.77156 0.77777 1.20427 1.22241 1.20455 1.23763 0.98473 0.99560 0.97117 1.21791 0.96214 0.97906 0.99874 1.21830 0.92677 0.99157 0.93941 1.19247 0.96080 0.93671 1.00457 1.21177 0.91091 0.99951 1.00430 0.89761 0.90045 0.90202 0.82634 0.84142 0.92076 0.92073 0.88822 0.86734 0.90477 0.91497 0.89968 0.79313 0.94011 0.90817 0.90341 0.83081 0.79990 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 9.98 71.24 0.71 0.23 16 2 C -0.07 -0.74 5.85 -20.06 -0.12 -0.86 16 3 C -0.10 -1.14 9.58 22.04 0.21 -0.93 16 4 C -0.10 -1.75 9.99 22.38 0.22 -1.52 16 5 C 0.09 1.93 6.61 40.47 0.27 2.20 16 6 N -0.44 -11.47 6.10 -177.77 -1.09 -12.55 16 7 C 0.09 2.49 6.56 42.31 0.28 2.76 16 8 C 0.56 18.02 7.65 86.92 0.66 18.69 16 9 O -0.57 -20.67 15.81 -3.72 -0.06 -20.73 16 10 N -0.58 -18.21 3.08 -822.58 -2.54 -20.74 16 11 C 0.10 2.74 7.80 127.77 1.00 3.73 16 12 C 0.13 4.19 4.19 45.52 0.19 4.38 16 13 C -0.16 -5.74 7.32 31.18 0.23 -5.51 16 14 C 0.16 6.27 4.48 45.58 0.20 6.48 16 15 N -0.72 -36.57 5.41 -320.15 -1.73 -38.30 16 16 C -0.25 -13.69 9.97 84.04 0.84 -12.85 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 19 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 20 Si 0.97 46.34 29.55 68.60 2.03 48.36 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 C -0.15 -5.20 7.35 31.12 0.23 -4.97 16 25 C -0.14 -2.96 9.54 22.36 0.21 -2.75 16 26 C -0.05 -0.78 9.88 22.48 0.22 -0.56 16 27 C -0.09 -1.60 5.75 -21.22 -0.12 -1.72 16 28 C -0.11 -1.22 9.37 22.31 0.21 -1.01 16 29 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.08 0.18 8.07 -2.39 -0.02 0.16 16 31 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 32 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.06 1.71 8.00 -2.38 -0.02 1.69 16 35 H 0.06 1.83 6.14 -2.39 -0.01 1.81 16 36 H 0.09 2.55 5.76 -2.39 -0.01 2.53 16 37 H 0.11 3.82 7.25 -2.39 -0.02 3.80 16 38 H 0.08 2.89 6.70 -2.39 -0.02 2.87 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 3.25 8.10 -2.38 -0.02 3.23 16 41 H 0.37 20.28 7.92 -92.71 -0.73 19.54 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.08 2.82 6.86 -2.38 -0.02 2.80 16 45 H 0.15 3.08 7.62 -2.91 -0.02 3.06 16 46 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 47 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -71.50 385.01 3.08 -68.43 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.26 Total: 32.58 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.91 Total: 1.92 kcal Atomic # 7 Polarization: -125.49 SS G_CDS: -5.07 Total: -130.56 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.06 Total: -20.73 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -71.50 3.08 -68.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999089954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.011 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds