Wall clock time and date at job start Tue Mar 31 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36347 * 119.96034 * 2 1 4 4 C 1.38868 * 121.05681 * 179.69771 * 3 2 1 5 5 C 1.38742 * 120.72840 * 0.62882 * 4 3 2 6 6 C 1.47432 * 120.33673 * 179.67848 * 5 4 3 7 7 O 1.21594 * 120.00032 * 222.68320 * 6 5 4 8 8 N 1.34783 * 119.99873 * 42.67989 * 6 5 4 9 9 C 1.46503 * 119.99643 * 5.61166 * 8 6 5 10 10 C 1.46496 * 119.99862 * 185.61456 * 8 6 5 11 11 C 1.53779 * 113.68697 * 199.09493 * 10 8 6 12 12 C 1.53780 * 87.08164 * 89.12725 * 11 10 8 13 13 N 1.46497 * 113.61383 * 270.88143 * 12 11 10 14 14 C 1.36945 * 120.00305 * 256.59592 * 13 12 11 15 15 H 1.07999 * 119.99452 * 0.02562 * 14 13 12 16 16 C 1.38806 * 120.00023 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00325 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46867 * 60.00434 * 18 16 14 20 20 H 1.48498 * 109.47227 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47552 * 300.00211 * 18 16 14 22 22 C 1.53774 * 87.08329 * 25.42963 * 12 11 10 23 23 C 1.41781 * 119.33520 * 359.40004 * 5 4 3 24 24 N 1.33353 * 121.06296 * 180.25420 * 23 5 4 25 25 C 1.31226 * 121.35288 * 179.97438 * 24 23 5 26 26 C 1.39228 * 121.70068 * 0.04411 * 25 24 23 27 27 C 1.36635 * 119.90889 * 359.97438 * 26 25 24 28 28 C 1.40442 * 119.95678 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47286 * 269.98160 * 1 2 3 30 30 H 1.09001 * 109.47291 * 29.98221 * 1 2 3 31 31 H 1.09002 * 109.47103 * 149.97956 * 1 2 3 32 32 H 1.08002 * 119.46811 * 0.03991 * 3 2 1 33 33 H 1.08004 * 119.63643 * 180.32327 * 4 3 2 34 34 H 1.08998 * 109.47146 * 265.81108 * 9 8 6 35 35 H 1.08997 * 109.47342 * 25.81812 * 9 8 6 36 36 H 1.08999 * 109.46757 * 145.81930 * 9 8 6 37 37 H 1.08998 * 112.85157 * 67.82378 * 10 8 6 38 38 H 1.09000 * 113.61332 * 203.67264 * 11 10 8 39 39 H 1.08999 * 113.61806 * 334.57222 * 11 10 8 40 40 H 1.09002 * 113.68935 * 139.99029 * 12 11 10 41 41 H 0.97001 * 119.99845 * 76.59430 * 13 12 11 42 42 H 0.97004 * 120.00328 * 179.97438 * 17 16 14 43 43 H 1.08993 * 113.61687 * 220.01861 * 22 12 11 44 44 H 1.09009 * 113.61521 * 89.11365 * 22 12 11 45 45 H 1.08000 * 119.14995 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.04821 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.92601 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5763 1.2079 0.0063 5 6 4.3080 0.0291 -0.0004 6 6 5.7818 0.0674 -0.0008 7 8 6.4094 -0.6868 -0.7190 8 7 6.4335 0.9385 0.7950 9 6 5.6847 1.7605 1.7489 10 6 7.8904 1.0633 0.7059 11 6 8.5313 1.7156 1.9422 12 6 8.6357 0.3013 2.5369 13 7 7.4527 -0.1029 3.3006 14 6 7.4865 -0.0969 4.6697 15 1 8.3852 0.2063 5.1862 16 6 6.3654 -0.4793 5.3933 17 7 5.2700 -0.8483 4.7637 18 14 6.4118 -0.4718 7.2607 19 1 6.6982 0.9032 7.7431 20 1 5.0981 -0.9179 7.7903 21 1 7.4755 -1.3939 7.7332 22 6 8.6433 -0.2212 1.0907 23 6 3.6241 -1.2129 -0.0008 24 7 4.2929 -2.3666 -0.0020 25 6 3.6658 -3.5194 -0.0018 26 6 2.2756 -3.5960 -0.0013 27 6 1.5302 -2.4508 -0.0005 28 6 2.2083 -1.2168 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3634 0.8901 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6386 2.1112 0.0007 33 1 4.0923 2.1567 0.0114 34 1 5.4571 2.7257 1.2965 35 1 4.7560 1.2551 2.0135 36 1 6.2842 1.9124 2.6465 37 1 8.2211 1.4972 -0.2377 38 1 9.4981 2.1769 1.7406 39 1 7.8546 2.3710 2.4904 40 1 9.5677 0.1189 3.0720 41 1 6.6454 -0.3748 2.8366 42 1 4.4867 -1.1159 5.2694 43 1 8.0570 -1.1294 0.9514 44 1 9.6407 -0.2894 0.6562 45 1 4.2430 -4.4322 -0.0033 46 1 1.7871 -4.5592 -0.0017 47 1 0.4510 -2.4911 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999138660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:55 Heat of formation + Delta-G solvation = 55.799704 kcal Electronic energy + Delta-G solvation = -30453.946207 eV Core-core repulsion = 26602.598093 eV Total energy + Delta-G solvation = -3851.348115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16136 -41.21278 -39.09253 -38.15176 -35.80022 -35.29255 -34.53829 -32.14496 -31.77061 -31.54770 -28.54291 -28.18095 -26.58852 -25.79198 -25.22974 -24.84446 -24.35329 -22.64100 -20.85809 -19.54294 -19.39244 -19.08489 -18.10921 -18.07308 -17.37254 -16.82417 -16.70048 -16.45888 -15.77419 -15.62316 -15.37228 -15.19819 -14.92450 -14.80171 -14.69565 -14.26517 -14.11432 -14.02828 -13.85096 -13.49880 -13.35549 -13.06802 -12.96461 -12.79064 -12.74468 -12.73705 -12.52173 -12.21003 -12.18448 -12.07074 -11.70308 -11.63200 -11.35204 -11.22174 -10.88172 -10.74756 -10.22807 -9.76305 -9.48542 -9.07309 -8.96350 -7.90094 -5.19890 -0.74870 -0.13608 0.83129 1.45728 1.48709 1.54288 1.72080 1.92942 2.26147 2.55955 3.13293 3.33905 3.39217 3.42962 3.66186 3.75488 3.78536 3.86042 3.93609 3.96152 3.97264 4.10386 4.24715 4.32638 4.38214 4.42511 4.43651 4.57969 4.64029 4.78468 4.82932 4.85347 4.89141 4.91817 4.94403 5.00169 5.07399 5.09701 5.15662 5.20935 5.22711 5.34357 5.44233 5.45335 5.52446 5.61196 5.81767 5.89186 6.28991 6.45104 7.06363 7.26682 7.35535 8.12967 8.38453 9.31033 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009760 B = 0.004674 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.049357 B = 5989.145033 C = 7061.556544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.037 4.037 3 C -0.135 4.135 4 C -0.050 4.050 5 C -0.149 4.149 6 C 0.562 3.438 7 O -0.561 6.561 8 N -0.584 5.584 9 C 0.081 3.919 10 C 0.128 3.872 11 C -0.155 4.155 12 C 0.144 3.856 13 N -0.717 5.717 14 C -0.244 4.244 15 H 0.076 0.924 16 C -0.068 4.068 17 N -0.960 5.960 18 Si 0.971 3.029 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.285 1.285 22 C -0.158 4.158 23 C 0.136 3.864 24 N -0.510 5.510 25 C 0.115 3.885 26 C -0.176 4.176 27 C -0.053 4.053 28 C -0.128 4.128 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.376 0.624 42 H 0.246 0.754 43 H 0.032 0.968 44 H 0.111 0.889 45 H 0.168 0.832 46 H 0.178 0.822 47 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 5.244 -11.602 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.038 4.038 3 C -0.153 4.153 4 C -0.070 4.070 5 C -0.153 4.153 6 C 0.351 3.649 7 O -0.440 6.440 8 N -0.316 5.316 9 C -0.061 4.061 10 C 0.024 3.976 11 C -0.196 4.196 12 C 0.034 3.966 13 N -0.356 5.356 14 C -0.375 4.375 15 H 0.094 0.906 16 C -0.261 4.261 17 N -0.610 5.610 18 Si 0.800 3.200 19 H -0.199 1.199 20 H -0.225 1.225 21 H -0.211 1.211 22 C -0.197 4.197 23 C 0.014 3.986 24 N -0.218 5.218 25 C -0.056 4.056 26 C -0.195 4.195 27 C -0.079 4.079 28 C -0.131 4.131 29 H 0.106 0.894 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.190 0.810 33 H 0.171 0.829 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.209 0.791 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.129 0.871 45 H 0.185 0.815 46 H 0.195 0.805 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -9.990 5.008 -11.769 16.229 hybrid contribution -0.619 -0.780 1.039 1.439 sum -10.609 4.229 -10.730 15.671 Atomic orbital electron populations 1.21017 0.87085 1.05154 1.04044 1.20372 0.98465 0.90974 0.93974 1.21109 0.92823 0.99653 1.01710 1.21764 0.95331 0.96775 0.93147 1.19853 0.92875 0.93765 1.08828 1.18305 0.87543 0.79194 0.79829 1.90684 1.69177 1.40490 1.43699 1.47424 1.06758 1.39996 1.37437 1.22039 0.96582 0.94356 0.93125 1.21873 0.78978 0.97650 0.99060 1.24029 1.01642 0.98816 0.95084 1.21468 0.90382 0.94141 0.90618 1.42436 1.11925 1.78612 1.02653 1.19605 0.97715 1.36505 0.83709 0.90564 1.25487 0.96035 1.02718 1.01869 1.69878 1.03171 1.52622 1.35288 0.85265 0.75935 0.78006 0.80803 1.19947 1.22522 1.21130 1.23685 1.00858 0.97280 0.97888 1.18891 0.90907 0.91544 0.97272 1.68033 1.41743 0.99100 1.12932 1.23526 0.94114 0.95679 0.92316 1.22255 0.94093 1.01580 1.01620 1.21983 1.02228 0.90119 0.93543 1.18998 0.92535 0.96794 1.04730 0.89438 0.88535 0.89577 0.80988 0.82893 0.89918 0.92692 0.90438 0.89251 0.86229 0.90735 0.92000 0.79076 0.94479 0.94931 0.87101 0.81509 0.80489 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 9.53 71.24 0.68 -0.80 16 2 C -0.04 -0.85 5.89 -19.77 -0.12 -0.96 16 3 C -0.14 -3.06 9.57 21.98 0.21 -2.85 16 4 C -0.05 -1.46 7.73 22.54 0.17 -1.29 16 5 C -0.15 -5.90 4.93 -19.86 -0.10 -6.00 16 6 C 0.56 24.86 6.82 86.66 0.59 25.45 16 7 O -0.56 -28.43 15.01 -4.01 -0.06 -28.49 16 8 N -0.58 -23.02 2.09 -823.53 -1.72 -24.74 16 9 C 0.08 2.94 7.36 127.77 0.94 3.88 16 10 C 0.13 4.63 4.18 45.52 0.19 4.82 16 11 C -0.16 -5.17 7.16 31.12 0.22 -4.94 16 12 C 0.14 6.10 4.55 45.52 0.21 6.31 16 13 N -0.72 -37.76 3.91 -320.46 -1.25 -39.02 16 14 C -0.24 -13.69 9.98 84.03 0.84 -12.85 16 15 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 16 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 17 N -0.96 -59.29 13.06 21.65 0.28 -59.01 16 18 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 22 C -0.16 -6.37 7.10 31.12 0.22 -6.15 16 23 C 0.14 5.49 6.59 40.61 0.27 5.76 16 24 N -0.51 -22.29 9.22 -187.96 -1.73 -24.02 16 25 C 0.12 3.86 11.15 85.02 0.95 4.81 16 26 C -0.18 -4.26 10.03 22.13 0.22 -4.04 16 27 C -0.05 -1.24 9.36 22.52 0.21 -1.03 16 28 C -0.13 -3.89 5.74 -21.29 -0.12 -4.02 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.10 0.80 8.08 -2.39 -0.02 0.79 16 31 H 0.09 0.83 6.42 -2.39 -0.02 0.81 16 32 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 3.68 6.26 -2.91 -0.02 3.66 16 34 H 0.08 2.22 7.22 -2.39 -0.02 2.20 16 35 H 0.05 2.23 6.08 -2.39 -0.01 2.21 16 36 H 0.08 3.18 4.72 -2.39 -0.01 3.16 16 37 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.07 2.60 5.74 -2.39 -0.01 2.58 16 40 H 0.06 2.55 8.12 -2.39 -0.02 2.53 16 41 H 0.38 21.82 6.13 -92.71 -0.57 21.25 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.03 1.62 7.01 -2.39 -0.02 1.60 16 44 H 0.11 3.70 8.14 -2.38 -0.02 3.68 16 45 H 0.17 4.75 8.06 -2.91 -0.02 4.73 16 46 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.18 2.45 6.42 -2.91 -0.02 2.43 16 Total: -1.00 -84.63 372.40 4.04 -80.59 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: 0.45 Total: 43.54 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 6.05 Total: 2.63 kcal Atomic # 7 Polarization: -142.36 SS G_CDS: -4.43 Total: -146.79 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.06 Total: -28.49 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -84.63 4.04 -80.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999138660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.386 kcal (2) G-P(sol) polarization free energy of solvation -84.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds