Wall clock time and date at job start Tue Mar 31 2020 22:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36537 * 120.09149 * 2 1 4 4 C 1.40718 * 118.24493 * 180.22261 * 3 2 1 5 5 C 1.40429 * 121.27954 * 179.79957 * 4 3 2 6 6 C 1.36135 * 119.64403 * 179.75998 * 5 4 3 7 7 C 1.39427 * 120.92107 * 359.95143 * 6 5 4 8 8 C 1.35991 * 121.09572 * 0.02929 * 7 6 5 9 9 C 1.40838 * 119.73179 * 359.97438 * 8 7 6 10 10 N 1.33244 * 120.99387 * 180.02562 * 9 8 7 11 11 C 1.31908 * 121.29944 * 179.97438 * 10 9 8 12 12 C 1.48270 * 119.23985 * 179.97438 * 11 10 9 13 13 O 1.21501 * 119.99601 * 104.27924 * 12 11 10 14 14 N 1.34770 * 119.99982 * 284.27717 * 12 11 10 15 15 C 1.46504 * 120.00130 * 4.93699 * 14 12 11 16 16 C 1.46503 * 120.00121 * 184.93897 * 14 12 11 17 17 C 1.53784 * 113.61526 * 219.13750 * 16 14 12 18 18 C 1.53949 * 87.02045 * 220.04569 * 17 16 14 19 19 N 1.46495 * 113.74686 * 139.94380 * 18 17 16 20 20 C 1.36935 * 119.99888 * 107.39920 * 19 18 17 21 21 H 1.07997 * 120.00708 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99479 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99690 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00426 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46832 * 89.99734 * 24 22 20 26 26 H 1.48493 * 109.47436 * 209.99850 * 24 22 20 27 27 H 1.48495 * 109.46914 * 329.99951 * 24 22 20 28 28 C 1.53781 * 113.61549 * 121.52804 * 16 14 12 29 29 H 1.09001 * 109.46953 * 274.90843 * 1 2 3 30 30 H 1.08993 * 109.46984 * 34.91578 * 1 2 3 31 31 H 1.09005 * 109.46741 * 154.91446 * 1 2 3 32 32 H 1.08002 * 120.87770 * 359.75310 * 3 2 1 33 33 H 1.07992 * 120.17341 * 359.68766 * 5 4 3 34 34 H 1.07999 * 119.53478 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.45596 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.13802 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.46761 * 84.90935 * 15 14 12 38 38 H 1.09003 * 109.46905 * 204.90348 * 15 14 12 39 39 H 1.08995 * 109.47235 * 324.90735 * 15 14 12 40 40 H 1.09006 * 112.84755 * 350.33172 * 16 14 12 41 41 H 1.08994 * 113.61118 * 334.56574 * 17 16 14 42 42 H 1.09006 * 113.61324 * 105.46885 * 17 16 14 43 43 H 1.09002 * 113.53725 * 270.81672 * 18 17 16 44 44 H 0.97001 * 119.99835 * 287.40282 * 19 18 17 45 45 H 0.96996 * 119.99578 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.61445 * 254.52642 * 28 16 14 47 47 H 1.08989 * 113.61379 * 25.43705 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0048 5 6 4.3654 2.3121 -0.0093 6 6 5.7243 2.2294 -0.0089 7 6 6.3668 0.9920 -0.0032 8 6 5.6569 -0.1679 0.0017 9 6 4.2492 -0.1254 0.0014 10 7 3.5288 -1.2463 0.0066 11 6 2.2102 -1.2134 0.0069 12 6 1.4539 -2.4887 0.0122 13 8 0.9212 -2.8748 1.0337 14 7 1.3574 -3.2196 -1.1159 15 6 2.0882 -2.8111 -2.3182 16 6 0.5217 -4.4227 -1.1401 17 6 1.1367 -5.5840 -1.9390 18 6 -0.2809 -5.8628 -2.4709 19 7 -0.3181 -6.2227 -3.8904 20 6 -0.5763 -7.5150 -4.2626 21 1 -0.7529 -8.2688 -3.5097 22 6 -0.6110 -7.8560 -5.6078 23 7 -0.8597 -9.0981 -5.9655 24 14 -0.3049 -6.5524 -6.9102 25 1 1.1465 -6.4919 -7.2183 26 1 -1.0586 -6.8971 -8.1423 27 1 -0.7591 -5.2320 -6.4051 28 6 -0.5888 -4.3800 -2.2030 29 1 -0.3633 0.0879 1.0239 30 1 -0.3633 0.8426 -0.5882 31 1 -0.3633 -0.9308 -0.4357 32 1 1.6675 2.1257 -0.0040 33 1 3.8802 3.2768 -0.0142 34 1 6.3127 3.1350 -0.0120 35 1 7.4461 0.9540 -0.0026 36 1 6.1705 -1.1179 0.0066 37 1 3.1052 -3.2011 -2.2752 38 1 1.5849 -3.2056 -3.2009 39 1 2.1183 -1.7230 -2.3729 40 1 0.1682 -4.7124 -0.1505 41 1 1.8366 -5.2613 -2.7097 42 1 1.5339 -6.3828 -1.3126 43 1 -0.8536 -6.5475 -1.8454 44 1 -0.1598 -5.5456 -4.5668 45 1 -0.8836 -9.3365 -6.9054 46 1 -1.5827 -4.2083 -1.7895 47 1 -0.3615 -3.7277 -3.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999142126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:03 Heat of formation + Delta-G solvation = 63.251121 kcal Electronic energy + Delta-G solvation = -28688.651502 eV Core-core repulsion = 24837.626505 eV Total energy + Delta-G solvation = -3851.024997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49581 -40.08661 -38.36650 -37.21101 -34.95420 -34.48838 -33.13798 -32.10131 -30.81064 -30.40415 -27.50239 -27.13597 -26.09206 -25.25161 -24.22175 -22.97913 -22.47650 -22.17659 -20.19038 -19.07623 -18.37744 -17.90243 -17.41820 -17.13172 -16.74995 -15.87489 -15.35209 -15.08554 -14.78285 -14.68351 -14.62489 -14.39734 -13.96659 -13.75690 -13.47759 -13.43149 -13.17231 -13.06373 -12.73495 -12.62391 -12.39609 -12.21367 -12.02648 -12.00219 -11.91641 -11.84046 -11.75261 -11.03554 -10.78164 -10.75210 -10.53035 -10.37371 -10.19772 -10.08647 -9.70356 -9.58373 -9.04100 -8.94417 -8.64734 -8.58783 -7.31591 -5.81070 -3.17254 -0.07651 0.32021 1.58114 2.22648 2.48555 2.82672 3.33164 3.35355 3.41812 3.63987 3.85937 4.09039 4.22355 4.32197 4.44540 4.54473 4.59670 4.68070 4.83722 4.92704 4.96714 5.00583 5.04828 5.11490 5.22376 5.29387 5.33747 5.36455 5.43309 5.49213 5.57740 5.59886 5.64751 5.71806 5.73279 5.75468 5.92793 5.99649 6.01393 6.08522 6.12100 6.17876 6.25921 6.39487 6.47933 6.62639 6.87699 7.30474 7.41110 7.94641 7.96871 8.38398 9.15412 9.87738 10.07062 11.37049 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.002456 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.904627 B =11396.341151 C =11964.192262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C -0.062 4.062 4 C -0.090 4.090 5 C -0.100 4.100 6 C -0.111 4.111 7 C -0.105 4.105 8 C -0.084 4.084 9 C 0.122 3.878 10 N -0.440 5.440 11 C 0.137 3.863 12 C 0.577 3.423 13 O -0.526 6.526 14 N -0.584 5.584 15 C 0.080 3.920 16 C 0.116 3.884 17 C -0.173 4.173 18 C 0.176 3.824 19 N -0.734 5.734 20 C -0.248 4.248 21 H 0.092 0.908 22 C 0.005 3.995 23 N -0.932 5.932 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.166 4.166 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.070 0.930 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.934 27.372 12.329 31.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.108 4.108 3 C -0.088 4.088 4 C -0.092 4.092 5 C -0.119 4.119 6 C -0.129 4.129 7 C -0.125 4.125 8 C -0.103 4.103 9 C 0.000 4.000 10 N -0.149 5.149 11 C -0.018 4.018 12 C 0.361 3.639 13 O -0.401 6.401 14 N -0.315 5.315 15 C -0.063 4.063 16 C 0.013 3.987 17 C -0.215 4.215 18 C 0.064 3.936 19 N -0.373 5.373 20 C -0.378 4.378 21 H 0.110 0.890 22 C -0.191 4.191 23 N -0.579 5.579 24 Si 0.714 3.286 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.206 4.206 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.195 0.805 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.101 26.076 12.822 31.106 hybrid contribution 0.034 1.736 -1.123 2.068 sum 11.135 27.812 11.699 32.162 Atomic orbital electron populations 1.20836 0.89289 1.03643 1.03483 1.20462 0.98028 0.92333 0.99982 1.21289 0.92472 0.98315 0.96676 1.18937 0.94148 0.94598 1.01546 1.20984 0.94110 0.97028 0.99772 1.20988 0.94659 0.98108 0.99096 1.20931 1.00564 0.91983 0.99044 1.20895 0.91045 0.99567 0.98753 1.18889 0.94239 0.87618 0.99302 1.67950 1.05908 1.30345 1.10700 1.21198 0.90115 0.93636 0.96874 1.17920 0.79677 0.82495 0.83763 1.90799 1.47679 1.70042 1.31590 1.47771 1.46655 1.25908 1.11130 1.21756 0.97023 0.99754 0.87779 1.22717 0.91986 0.83851 1.00171 1.24325 1.01504 0.96458 0.99243 1.21345 0.93154 0.92333 0.86738 1.42696 1.85287 1.08458 1.00861 1.19141 1.40873 0.85002 0.92797 0.88992 1.24703 1.01630 0.95986 0.96768 1.69704 1.55595 1.16434 1.16149 0.86558 0.77988 0.81690 0.82328 1.21046 1.21689 1.20348 1.23974 0.98222 1.00160 0.98253 0.89944 0.90570 0.90932 0.83697 0.85085 0.85368 0.85076 0.84423 0.91799 0.89889 0.92144 0.86269 0.89928 0.91433 0.89304 0.80518 0.92999 0.91167 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.67 36.01 0.35 -0.68 16 2 C -0.11 -1.12 5.89 -104.48 -0.62 -1.74 16 3 C -0.06 -0.53 9.54 -39.26 -0.37 -0.91 16 4 C -0.09 -0.86 5.75 -106.71 -0.61 -1.47 16 5 C -0.10 -0.69 9.77 -39.51 -0.39 -1.07 16 6 C -0.11 -0.67 9.95 -39.89 -0.40 -1.07 16 7 C -0.11 -0.71 9.94 -39.95 -0.40 -1.11 16 8 C -0.08 -0.77 9.99 -39.41 -0.39 -1.17 16 9 C 0.12 1.40 6.61 -84.85 -0.56 0.83 16 10 N -0.44 -5.92 10.17 -7.54 -0.08 -6.00 16 11 C 0.14 1.83 4.70 -82.96 -0.39 1.44 16 12 C 0.58 8.69 5.61 -12.14 -0.07 8.62 16 13 O -0.53 -9.38 16.58 5.36 0.09 -9.29 16 14 N -0.58 -8.18 3.08 -173.95 -0.54 -8.72 16 15 C 0.08 0.97 8.86 59.85 0.53 1.50 16 16 C 0.12 1.71 4.22 -67.11 -0.28 1.43 16 17 C -0.17 -2.83 7.31 -25.83 -0.19 -3.02 16 18 C 0.18 3.24 4.48 -67.03 -0.30 2.94 16 19 N -0.73 -16.72 5.21 -52.55 -0.27 -17.00 16 20 C -0.25 -6.85 10.45 -15.06 -0.16 -7.01 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.01 0.15 5.50 -17.42 -0.10 0.05 16 23 N -0.93 -28.93 13.97 55.49 0.78 -28.16 16 24 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 28 C -0.17 -2.51 7.35 -25.91 -0.19 -2.70 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 31 H 0.07 0.76 6.87 -51.93 -0.36 0.40 16 32 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 34 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.99 6.14 -51.93 -0.32 0.67 16 39 H 0.06 0.66 6.99 -51.93 -0.36 0.30 16 40 H 0.12 1.84 7.20 -51.93 -0.37 1.47 16 41 H 0.08 1.36 6.70 -51.93 -0.35 1.01 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 44 H 0.36 8.05 5.78 -40.82 -0.24 7.81 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.08 1.18 6.87 -51.94 -0.36 0.82 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -34.11 385.04 -10.06 -44.17 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.59 Total: 7.42 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -4.53 Total: -5.13 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.11 Total: -59.87 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.11 -10.06 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999142126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.422 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds